Wall clock time and date at job start Tue Mar 31 2020 06:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.47062 * 2 1 4 4 C 1.53004 * 109.46803 * 239.99879 * 2 1 3 5 5 C 1.52999 * 109.46914 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47141 * 59.99999 * 5 4 2 7 7 C 1.53004 * 109.47217 * 299.99815 * 6 5 4 8 8 C 1.52999 * 109.46914 * 60.00046 * 7 6 5 9 9 H 1.09006 * 109.47197 * 59.99907 * 8 7 6 10 10 C 1.52997 * 109.47131 * 179.97438 * 8 7 6 11 11 N 1.46499 * 109.47555 * 295.00471 * 10 8 7 12 12 C 1.34777 * 120.00199 * 180.02562 * 11 10 8 13 13 O 1.21283 * 119.99750 * 359.97438 * 12 11 10 14 14 C 1.50702 * 119.99928 * 180.27479 * 12 11 10 15 15 H 1.09003 * 109.46824 * 319.71785 * 14 12 11 16 16 N 1.46900 * 109.46704 * 199.72391 * 14 12 11 17 17 C 1.53002 * 109.47121 * 79.72099 * 14 12 11 18 18 C 1.52996 * 109.46946 * 185.00076 * 17 14 12 19 19 C 1.50694 * 109.47332 * 179.97438 * 18 17 14 20 20 H 1.08000 * 119.99886 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00223 * 179.97438 * 19 18 17 22 22 N 1.31518 * 119.99806 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00191 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47250 * 89.99324 * 23 21 19 25 25 H 1.48496 * 109.47102 * 209.99702 * 23 21 19 26 26 H 1.48501 * 109.46801 * 329.99457 * 23 21 19 27 27 H 1.09001 * 109.46617 * 299.99946 * 1 2 3 28 28 H 1.08998 * 109.46802 * 59.99888 * 1 2 3 29 29 H 1.08998 * 109.47062 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47158 * 300.00253 * 4 2 1 31 31 H 1.09003 * 109.46777 * 59.99986 * 4 2 1 32 32 H 1.09001 * 109.47203 * 180.02562 * 5 4 2 33 33 H 1.09006 * 109.47197 * 300.00093 * 5 4 2 34 34 H 1.08998 * 109.47183 * 60.00264 * 6 5 4 35 35 H 1.09006 * 109.46848 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47411 * 300.00309 * 7 6 5 37 37 H 1.09003 * 109.46792 * 179.97438 * 7 6 5 38 38 H 1.08998 * 109.47382 * 175.00033 * 10 8 7 39 39 H 1.09002 * 109.47216 * 55.00470 * 10 8 7 40 40 H 0.97000 * 119.99484 * 359.97438 * 11 10 8 41 41 H 1.00898 * 110.99811 * 299.99578 * 16 14 12 42 42 H 1.00898 * 111.00326 * 63.95847 * 16 14 12 43 43 H 1.08996 * 109.46933 * 304.99916 * 17 14 12 44 44 H 1.08998 * 109.47170 * 65.00270 * 17 14 12 45 45 H 1.09000 * 109.47119 * 300.00211 * 18 17 14 46 46 H 1.09002 * 109.47419 * 59.99484 * 18 17 14 47 47 H 0.97006 * 119.99834 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7219 -1.2490 6 6 4.0795 -1.4435 0.0003 7 6 3.5695 -0.7222 1.2495 8 6 2.0396 -0.7216 1.2492 9 1 1.6758 -1.7492 1.2490 10 6 1.5296 -0.0009 2.4988 11 7 1.9167 -0.7582 3.6916 12 6 1.5726 -0.3103 4.9153 13 8 0.9429 0.7200 5.0290 14 6 1.9762 -1.0861 6.1426 15 1 1.8595 -2.1531 5.9526 16 7 1.1230 -0.6938 7.2723 17 6 3.4381 -0.7847 6.4787 18 6 3.8845 -1.6649 7.6478 19 6 5.3246 -1.3685 7.9784 20 1 5.8670 -0.6262 7.4117 21 6 5.9493 -2.0442 9.0051 22 7 7.2063 -1.7858 9.2933 23 14 5.0110 -3.3276 9.9859 24 1 5.1733 -4.6570 9.3444 25 1 5.5429 -3.3782 11.3714 26 1 3.5707 -2.9677 10.0215 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1392 32 1 3.9333 -1.2353 -2.1392 33 1 3.9337 0.3057 -1.2488 34 1 3.7158 -2.4710 0.0000 35 1 5.1695 -1.4443 0.0002 36 1 3.9332 0.3054 1.2498 37 1 3.9322 -1.2366 2.1395 38 1 0.4433 0.0778 2.4550 39 1 1.9645 0.9975 2.5453 40 1 2.4200 -1.5824 3.6006 41 1 1.2133 0.2918 7.4684 42 1 0.1600 -0.9418 7.1014 43 1 4.0611 -0.9925 5.6088 44 1 3.5384 0.2649 6.7552 45 1 3.2614 -1.4571 8.5176 46 1 3.7841 -2.7145 7.3714 47 1 7.6457 -2.2610 10.0159 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424099444.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:58 Heat of formation + Delta-G solvation = -107.621926 kcal Electronic energy + Delta-G solvation = -22709.180771 eV Core-core repulsion = 19502.679819 eV Total energy + Delta-G solvation = -3206.500952 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.19315 -39.92473 -36.88970 -35.90094 -34.77693 -33.64703 -32.28282 -32.03732 -28.77037 -27.66120 -26.45548 -24.79379 -22.73490 -22.02321 -21.93651 -21.24313 -20.53312 -18.97107 -18.18487 -17.44130 -16.85947 -16.25367 -16.20794 -15.87822 -15.58790 -15.38781 -15.00907 -14.87719 -14.83831 -14.66760 -14.15897 -14.02740 -13.55227 -13.46418 -13.03897 -12.84259 -12.79496 -12.70101 -12.53360 -12.40764 -11.99635 -11.94181 -11.76155 -11.73931 -11.59612 -11.33872 -11.30232 -11.13698 -10.92596 -10.90065 -10.70272 -10.08459 -9.65550 -8.24534 -6.27864 1.40441 1.44224 1.52218 1.58346 2.21926 2.42389 3.12104 3.56649 3.61378 3.70948 3.76830 3.88152 4.07131 4.11527 4.24204 4.27418 4.33775 4.44553 4.50910 4.57095 4.60062 4.68640 4.71504 4.79779 4.84751 4.86787 4.93900 5.05598 5.10766 5.14623 5.19941 5.24503 5.32259 5.34993 5.40726 5.45404 5.47348 5.50956 5.62203 5.66215 5.74555 6.07347 6.33008 6.45543 6.54393 6.80877 7.16270 7.36769 8.92411 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020234 B = 0.003476 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.482918 B = 8052.267652 C = 9039.613814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.082 4.082 3 H 0.065 0.935 4 C -0.108 4.108 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.119 4.119 8 C -0.082 4.082 9 H 0.087 0.913 10 C 0.121 3.879 11 N -0.714 5.714 12 C 0.485 3.515 13 O -0.586 6.586 14 C 0.084 3.916 15 H 0.121 0.879 16 N -0.819 5.819 17 C -0.078 4.078 18 C 0.003 3.997 19 C -0.532 4.532 20 H 0.027 0.973 21 C 0.002 3.998 22 N -0.956 5.956 23 Si 0.953 3.047 24 H -0.263 1.263 25 H -0.290 1.290 26 H -0.244 1.244 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.060 0.940 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.413 0.587 41 H 0.345 0.655 42 H 0.349 0.651 43 H 0.065 0.935 44 H 0.038 0.962 45 H 0.029 0.971 46 H 0.023 0.977 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.508 -1.655 -22.886 27.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.101 4.101 3 H 0.083 0.917 4 C -0.146 4.146 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.156 4.156 8 C -0.100 4.100 9 H 0.106 0.894 10 C -0.003 4.003 11 N -0.366 5.366 12 C 0.270 3.730 13 O -0.466 6.466 14 C -0.032 4.032 15 H 0.139 0.861 16 N -0.348 5.348 17 C -0.117 4.117 18 C -0.035 4.035 19 C -0.570 4.570 20 H 0.046 0.954 21 C -0.194 4.194 22 N -0.597 5.597 23 Si 0.776 3.224 24 H -0.188 1.188 25 H -0.216 1.216 26 H -0.168 1.168 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.250 0.750 41 H 0.158 0.842 42 H 0.162 0.838 43 H 0.084 0.916 44 H 0.057 0.943 45 H 0.047 0.953 46 H 0.041 0.959 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -14.387 -1.477 -22.275 26.558 hybrid contribution 0.133 0.240 -0.004 0.274 sum -14.255 -1.237 -22.279 26.478 Atomic orbital electron populations 1.21914 0.94758 1.02272 1.01857 1.21067 0.95774 0.99339 0.93885 0.91658 1.21553 0.95214 1.00891 0.96920 1.21551 0.95861 1.00583 0.97800 1.21518 1.00319 0.99596 0.94113 1.21624 0.94634 1.00811 0.98568 1.21363 0.95623 1.00304 0.92758 0.89438 1.21535 0.99881 0.94930 0.83943 1.46098 1.56970 1.28136 1.05421 1.22404 0.78263 0.85714 0.86637 1.90641 1.42548 1.26009 1.87432 1.21676 0.94915 1.00448 0.86140 0.86108 1.59020 1.12660 1.24706 1.38409 1.21249 0.91715 0.99467 0.99250 1.19368 0.93348 0.95418 0.95344 1.21570 0.97457 1.21610 1.16340 0.95445 1.26026 0.95602 0.99530 0.98261 1.70089 1.13197 1.44496 1.31908 0.85614 0.80292 0.79178 0.77313 1.18835 1.21578 1.16771 0.93187 0.91841 0.92086 0.91406 0.91169 0.91241 0.92505 0.91313 0.92146 0.92796 0.92155 0.91452 0.93453 0.75045 0.84153 0.83802 0.91622 0.94350 0.95281 0.95852 0.92661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 8.85 71.98 0.64 -1.23 16 2 C -0.08 -1.08 2.25 -10.79 -0.02 -1.10 16 3 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 4 C -0.11 -1.20 5.20 30.60 0.16 -1.04 16 5 C -0.12 -1.46 5.92 30.59 0.18 -1.28 16 6 C -0.12 -1.64 5.92 30.60 0.18 -1.46 16 7 C -0.12 -1.94 5.08 30.60 0.16 -1.79 16 8 C -0.08 -1.22 1.75 -10.80 -0.02 -1.24 16 9 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 10 C 0.12 2.46 4.85 86.38 0.42 2.88 16 11 N -0.71 -15.99 5.28 -463.06 -2.45 -18.44 16 12 C 0.48 14.12 7.07 87.66 0.62 14.74 16 13 O -0.59 -20.92 16.25 -3.04 -0.05 -20.97 16 14 C 0.08 2.50 3.15 44.17 0.14 2.64 16 15 H 0.12 3.04 8.14 -2.39 -0.02 3.02 16 16 N -0.82 -24.66 8.44 -171.79 -1.45 -26.11 16 17 C -0.08 -2.98 4.78 30.59 0.15 -2.84 16 18 C 0.00 0.13 3.93 29.84 0.12 0.24 16 19 C -0.53 -30.88 9.66 25.60 0.25 -30.63 16 20 H 0.03 1.76 7.99 -2.91 -0.02 1.73 16 21 C 0.00 0.11 5.47 84.65 0.46 0.57 16 22 N -0.96 -60.81 13.96 21.45 0.30 -60.51 16 23 Si 0.95 44.76 27.47 68.60 1.88 46.64 16 24 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 H -0.24 -10.80 6.54 99.48 0.65 -10.15 16 27 H 0.05 0.72 6.32 -2.39 -0.02 0.71 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.06 7.18 -2.39 -0.02 1.05 16 38 H 0.07 1.42 6.17 -2.39 -0.01 1.41 16 39 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.41 7.49 7.65 -92.71 -0.71 6.78 16 41 H 0.35 11.03 8.58 -89.70 -0.77 10.27 16 42 H 0.35 8.81 9.06 -89.70 -0.81 8.00 16 43 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 44 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 45 H 0.03 1.37 6.81 -2.39 -0.02 1.36 16 46 H 0.02 1.01 7.57 -2.39 -0.02 0.99 16 47 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 Total: -1.00 -70.85 363.82 0.27 -70.58 By element: Atomic # 1 Polarization: 31.73 SS G_CDS: -1.39 Total: 30.33 kcal Atomic # 6 Polarization: -24.95 SS G_CDS: 3.42 Total: -21.53 kcal Atomic # 7 Polarization: -101.46 SS G_CDS: -3.60 Total: -105.06 kcal Atomic # 8 Polarization: -20.92 SS G_CDS: -0.05 Total: -20.97 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 1.88 Total: 46.64 kcal Total: -70.85 0.27 -70.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424099444.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.040 kcal (2) G-P(sol) polarization free energy of solvation -70.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds