Wall clock time and date at job start Tue Mar 31 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47194 * 2 1 4 4 C 1.52995 * 109.47139 * 240.00170 * 2 1 3 5 5 C 1.53002 * 109.46958 * 300.00054 * 4 2 1 6 6 C 1.52999 * 109.47019 * 299.99729 * 5 4 2 7 7 C 1.52994 * 109.47016 * 59.99925 * 6 5 4 8 8 C 1.52994 * 109.47449 * 300.00090 * 7 6 5 9 9 H 1.08999 * 109.47086 * 300.00079 * 8 7 6 10 10 C 1.53004 * 109.47542 * 179.97438 * 8 7 6 11 11 N 1.46504 * 109.46733 * 64.99921 * 10 8 7 12 12 C 1.34775 * 119.99634 * 180.02562 * 11 10 8 13 13 O 1.21283 * 120.00078 * 359.97438 * 12 11 10 14 14 C 1.50707 * 119.99898 * 180.02562 * 12 11 10 15 15 H 1.08994 * 109.47032 * 319.99329 * 14 12 11 16 16 N 1.46897 * 109.46776 * 199.99379 * 14 12 11 17 17 C 1.52999 * 109.47009 * 79.99625 * 14 12 11 18 18 C 1.53006 * 109.46623 * 184.99986 * 17 14 12 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 14 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47141 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47494 * 119.99680 * 23 21 19 26 26 H 1.48505 * 109.47047 * 239.99860 * 23 21 19 27 27 H 1.09007 * 109.47082 * 299.99784 * 1 2 3 28 28 H 1.08998 * 109.47583 * 59.99890 * 1 2 3 29 29 H 1.09003 * 109.46895 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47352 * 179.97438 * 4 2 1 31 31 H 1.09009 * 109.47412 * 59.99421 * 4 2 1 32 32 H 1.09007 * 109.46949 * 179.97438 * 5 4 2 33 33 H 1.08995 * 109.47684 * 60.00049 * 5 4 2 34 34 H 1.08999 * 109.47055 * 300.00131 * 6 5 4 35 35 H 1.09000 * 109.47084 * 180.02562 * 6 5 4 36 36 H 1.09009 * 109.46939 * 179.97438 * 7 6 5 37 37 H 1.09007 * 109.46969 * 60.00495 * 7 6 5 38 38 H 1.09000 * 109.46911 * 305.00411 * 10 8 7 39 39 H 1.09000 * 109.47330 * 185.00148 * 10 8 7 40 40 H 0.96996 * 120.00517 * 359.97438 * 11 10 8 41 41 H 1.00896 * 111.00712 * 299.99678 * 16 14 12 42 42 H 1.00902 * 111.00083 * 63.95414 * 16 14 12 43 43 H 1.09000 * 109.47486 * 65.00157 * 17 14 12 44 44 H 1.09001 * 109.47362 * 304.99435 * 17 14 12 45 45 H 1.08993 * 109.46955 * 300.00075 * 18 17 14 46 46 H 1.09000 * 109.47050 * 59.99904 * 18 17 14 47 47 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5299 -2.1637 -1.2492 6 6 2.0400 -2.8850 0.0000 7 6 1.5301 -2.1637 1.2492 8 6 2.0400 -0.7213 1.2492 9 1 3.1300 -0.7212 1.2491 10 6 1.5296 0.0002 2.4982 11 7 2.1133 -0.6173 3.6916 12 6 1.8040 -0.1439 4.9150 13 8 1.0428 0.7935 5.0278 14 6 2.4049 -0.7787 6.1426 15 1 2.4297 -1.8611 6.0168 16 7 1.5901 -0.4407 7.3172 17 6 3.8288 -0.2557 6.3421 18 6 4.4828 -0.9913 7.5136 19 6 5.8855 -0.4766 7.7098 20 1 6.2720 0.2974 7.0633 21 6 6.6758 -0.9945 8.7139 22 7 6.2052 -1.9374 9.5008 23 14 8.4142 -0.3560 8.9575 24 1 8.7009 0.6964 7.9497 25 1 8.5450 0.2157 10.3218 26 1 9.3792 -1.4730 8.7943 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 -0.7208 -1.2495 31 1 1.6766 -0.2074 -2.1393 32 1 1.8929 -2.6774 -2.1395 33 1 0.4400 -2.1638 -1.2492 34 1 3.1300 -2.8849 -0.0001 35 1 1.6770 -3.9127 -0.0003 36 1 1.8931 -2.6779 2.1392 37 1 0.4400 -2.1638 1.2492 38 1 0.4433 -0.0767 2.5437 39 1 1.8179 1.0505 2.4544 40 1 2.7219 -1.3672 3.6014 41 1 1.5515 0.5580 7.4555 42 1 0.6629 -0.8309 7.2385 43 1 3.7969 0.8126 6.5562 44 1 4.4094 -0.4274 5.4357 45 1 3.9022 -0.8195 8.4200 46 1 4.5147 -2.0595 7.2995 47 1 6.7610 -2.3015 10.2074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424099445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:01 Heat of formation + Delta-G solvation = -84.515697 kcal Electronic energy + Delta-G solvation = -22669.959113 eV Core-core repulsion = 19464.460123 eV Total energy + Delta-G solvation = -3205.498991 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.21379 -39.20284 -35.33269 -34.79331 -32.78170 -32.41129 -31.24456 -30.06749 -27.68899 -26.57628 -25.35572 -23.42747 -22.51084 -21.47272 -20.62263 -19.80895 -18.68536 -17.13831 -16.41168 -16.10641 -15.86003 -15.45199 -15.28813 -14.57436 -14.49647 -14.34477 -14.03090 -13.83954 -13.36841 -13.16357 -12.97229 -12.80320 -12.31528 -12.18472 -11.97986 -11.83535 -11.75405 -11.50724 -11.36059 -11.12694 -10.90581 -10.66014 -10.51355 -10.50531 -10.36945 -10.24079 -10.07617 -9.78467 -9.35730 -8.99751 -8.95381 -8.33405 -8.18227 -5.93125 -3.95146 2.83347 3.33613 3.34301 3.41898 3.45878 4.29883 4.36343 4.40821 4.50846 4.82044 4.87747 4.91807 4.98053 5.03273 5.04995 5.14847 5.20646 5.29449 5.38103 5.42457 5.44539 5.53075 5.56535 5.65397 5.69169 5.71531 5.79319 5.82777 5.86629 5.91896 5.96196 6.02396 6.08579 6.25579 6.44486 6.52774 6.67836 7.10634 7.41378 7.64819 7.77569 7.82691 7.97549 8.14349 8.37396 8.49634 9.13177 9.68025 11.17833 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020390 B = 0.003196 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.865110 B = 8760.199790 C = 9462.555454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.083 4.083 3 H 0.072 0.928 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.120 4.120 7 C -0.117 4.117 8 C -0.095 4.095 9 H 0.078 0.922 10 C 0.121 3.879 11 N -0.730 5.730 12 C 0.482 3.518 13 O -0.556 6.556 14 C 0.078 3.922 15 H 0.097 0.903 16 N -0.807 5.807 17 C -0.095 4.095 18 C 0.031 3.969 19 C -0.521 4.521 20 H 0.052 0.948 21 C 0.057 3.943 22 N -0.893 5.893 23 Si 0.889 3.111 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.285 1.285 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.402 0.598 41 H 0.347 0.653 42 H 0.333 0.667 43 H 0.052 0.948 44 H 0.053 0.947 45 H 0.035 0.965 46 H 0.013 0.987 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.415 -0.854 -21.871 24.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.102 4.102 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.157 4.157 7 C -0.155 4.155 8 C -0.113 4.113 9 H 0.097 0.903 10 C -0.003 4.003 11 N -0.382 5.382 12 C 0.267 3.733 13 O -0.434 6.434 14 C -0.038 4.038 15 H 0.115 0.885 16 N -0.335 5.335 17 C -0.133 4.133 18 C -0.006 4.006 19 C -0.560 4.560 20 H 0.071 0.929 21 C -0.144 4.144 22 N -0.532 5.532 23 Si 0.717 3.283 24 H -0.199 1.199 25 H -0.211 1.211 26 H -0.211 1.211 27 H 0.076 0.924 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.236 0.764 41 H 0.161 0.839 42 H 0.145 0.855 43 H 0.071 0.929 44 H 0.071 0.929 45 H 0.053 0.947 46 H 0.031 0.969 47 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -11.377 -0.690 -21.201 24.071 hybrid contribution 0.689 0.472 -0.633 1.048 sum -10.688 -0.218 -21.834 24.310 Atomic orbital electron populations 1.22018 0.95217 1.02213 1.01764 1.21035 0.96081 0.99149 0.93921 0.91006 1.21553 1.00657 0.95650 0.97247 1.21578 1.00977 0.95606 0.97753 1.21526 1.00934 0.98787 0.94456 1.21643 1.01179 0.94662 0.97996 1.21415 1.00923 0.95290 0.93703 0.90336 1.21423 0.98218 0.97019 0.83596 1.46197 1.49373 1.36786 1.05878 1.22731 0.80788 0.83659 0.86074 1.90639 1.36961 1.28781 1.87042 1.21829 0.96534 1.00461 0.84956 0.88536 1.58998 1.17841 1.19073 1.37583 1.21651 0.89625 1.00535 1.01511 1.19021 0.94313 0.94640 0.92655 1.21325 0.98716 1.20839 1.15105 0.92944 1.24996 0.98226 0.95162 0.95997 1.69987 1.36536 1.27413 1.19260 0.86597 0.85016 0.78734 0.77982 1.19859 1.21057 1.21113 0.92367 0.92830 0.91959 0.91901 0.92004 0.92276 0.91747 0.91878 0.92024 0.91771 0.91499 0.91586 0.91871 0.76352 0.83858 0.85515 0.92887 0.92881 0.94665 0.96891 0.93168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.14 8.15 37.16 0.30 -0.83 16 2 C -0.08 -0.62 2.72 -90.62 -0.25 -0.87 16 3 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 4 C -0.11 -0.77 5.45 -26.73 -0.15 -0.91 16 5 C -0.12 -0.80 5.65 -26.73 -0.15 -0.95 16 6 C -0.12 -0.84 5.92 -26.73 -0.16 -1.00 16 7 C -0.12 -0.92 4.80 -26.74 -0.13 -1.05 16 8 C -0.09 -0.79 2.00 -90.62 -0.18 -0.98 16 9 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 10 C 0.12 1.34 4.56 -4.04 -0.02 1.32 16 11 N -0.73 -9.11 5.28 -60.29 -0.32 -9.42 16 12 C 0.48 7.67 7.07 -10.98 -0.08 7.60 16 13 O -0.56 -10.45 16.25 5.55 0.09 -10.36 16 14 C 0.08 1.32 3.15 -68.86 -0.22 1.10 16 15 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 16 N -0.81 -13.85 8.44 -5.66 -0.05 -13.89 16 17 C -0.09 -1.93 4.78 -26.73 -0.13 -2.06 16 18 C 0.03 0.79 4.86 -27.88 -0.14 0.65 16 19 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 20 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -27.00 13.29 55.43 0.74 -26.27 16 23 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 24 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 27 H 0.06 0.47 6.54 -51.92 -0.34 0.13 16 28 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.06 0.44 4.81 -51.93 -0.25 0.19 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 32 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 33 H 0.06 0.42 6.43 -51.93 -0.33 0.08 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.52 7.18 -51.92 -0.37 0.15 16 37 H 0.07 0.54 6.43 -51.92 -0.33 0.20 16 38 H 0.07 0.76 6.71 -51.93 -0.35 0.42 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.40 4.33 7.65 -40.82 -0.31 4.01 16 41 H 0.35 6.07 8.58 -39.29 -0.34 5.73 16 42 H 0.33 4.97 9.06 -39.29 -0.36 4.61 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.59 16 45 H 0.03 0.98 7.75 -51.93 -0.40 0.58 16 46 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 47 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 360.84 15.07 5.44 5.44 Total: -1.00 -32.08 360.84 -9.24 -41.32 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -8.42 Total: 7.95 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -1.70 Total: -11.55 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.37 Total: -49.58 kcal Atomic # 8 Polarization: -10.45 SS G_CDS: 0.09 Total: -10.36 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.08 -9.24 -41.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424099445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.194 kcal (2) G-P(sol) polarization free energy of solvation -32.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds