Wall clock time and date at job start Tue Mar 31 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47194 * 2 1 4 4 C 1.52995 * 109.47139 * 240.00170 * 2 1 3 5 5 C 1.53002 * 109.46958 * 300.00054 * 4 2 1 6 6 C 1.52999 * 109.47019 * 299.99729 * 5 4 2 7 7 C 1.52994 * 109.47016 * 59.99925 * 6 5 4 8 8 C 1.52994 * 109.47449 * 300.00090 * 7 6 5 9 9 H 1.08999 * 109.47086 * 300.00079 * 8 7 6 10 10 C 1.53004 * 109.47542 * 179.97438 * 8 7 6 11 11 N 1.46504 * 109.46733 * 64.99921 * 10 8 7 12 12 C 1.34775 * 119.99634 * 180.02562 * 11 10 8 13 13 O 1.21283 * 120.00078 * 359.97438 * 12 11 10 14 14 C 1.50707 * 119.99898 * 180.02562 * 12 11 10 15 15 H 1.08994 * 109.47032 * 319.99329 * 14 12 11 16 16 N 1.46897 * 109.46776 * 199.99379 * 14 12 11 17 17 C 1.52999 * 109.47009 * 79.99625 * 14 12 11 18 18 C 1.53006 * 109.46623 * 184.99986 * 17 14 12 19 19 C 1.50699 * 109.46866 * 179.97438 * 18 17 14 20 20 H 1.08003 * 119.99962 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00270 * 180.02562 * 19 18 17 22 22 N 1.31522 * 119.99834 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00496 * 180.02562 * 21 19 18 24 24 H 1.48508 * 109.47141 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47494 * 119.99680 * 23 21 19 26 26 H 1.48505 * 109.47047 * 239.99860 * 23 21 19 27 27 H 1.09007 * 109.47082 * 299.99784 * 1 2 3 28 28 H 1.08998 * 109.47583 * 59.99890 * 1 2 3 29 29 H 1.09003 * 109.46895 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47352 * 179.97438 * 4 2 1 31 31 H 1.09009 * 109.47412 * 59.99421 * 4 2 1 32 32 H 1.09007 * 109.46949 * 179.97438 * 5 4 2 33 33 H 1.08995 * 109.47684 * 60.00049 * 5 4 2 34 34 H 1.08999 * 109.47055 * 300.00131 * 6 5 4 35 35 H 1.09000 * 109.47084 * 180.02562 * 6 5 4 36 36 H 1.09009 * 109.46939 * 179.97438 * 7 6 5 37 37 H 1.09007 * 109.46969 * 60.00495 * 7 6 5 38 38 H 1.09000 * 109.46911 * 305.00411 * 10 8 7 39 39 H 1.09000 * 109.47330 * 185.00148 * 10 8 7 40 40 H 0.96996 * 120.00517 * 359.97438 * 11 10 8 41 41 H 1.00896 * 111.00712 * 299.99678 * 16 14 12 42 42 H 1.00902 * 111.00083 * 63.95414 * 16 14 12 43 43 H 1.09000 * 109.47486 * 65.00157 * 17 14 12 44 44 H 1.09001 * 109.47362 * 304.99435 * 17 14 12 45 45 H 1.08993 * 109.46955 * 300.00075 * 18 17 14 46 46 H 1.09000 * 109.47050 * 59.99904 * 18 17 14 47 47 H 0.96992 * 120.00032 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5299 -2.1637 -1.2492 6 6 2.0400 -2.8850 0.0000 7 6 1.5301 -2.1637 1.2492 8 6 2.0400 -0.7213 1.2492 9 1 3.1300 -0.7212 1.2491 10 6 1.5296 0.0002 2.4982 11 7 2.1133 -0.6173 3.6916 12 6 1.8040 -0.1439 4.9150 13 8 1.0428 0.7935 5.0278 14 6 2.4049 -0.7787 6.1426 15 1 2.4297 -1.8611 6.0168 16 7 1.5901 -0.4407 7.3172 17 6 3.8288 -0.2557 6.3421 18 6 4.4828 -0.9913 7.5136 19 6 5.8855 -0.4766 7.7098 20 1 6.2720 0.2974 7.0633 21 6 6.6758 -0.9945 8.7139 22 7 6.2052 -1.9374 9.5008 23 14 8.4142 -0.3560 8.9575 24 1 8.7009 0.6964 7.9497 25 1 8.5450 0.2157 10.3218 26 1 9.3792 -1.4730 8.7943 27 1 -0.3634 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 -0.7208 -1.2495 31 1 1.6766 -0.2074 -2.1393 32 1 1.8929 -2.6774 -2.1395 33 1 0.4400 -2.1638 -1.2492 34 1 3.1300 -2.8849 -0.0001 35 1 1.6770 -3.9127 -0.0003 36 1 1.8931 -2.6779 2.1392 37 1 0.4400 -2.1638 1.2492 38 1 0.4433 -0.0767 2.5437 39 1 1.8179 1.0505 2.4544 40 1 2.7219 -1.3672 3.6014 41 1 1.5515 0.5580 7.4555 42 1 0.6629 -0.8309 7.2385 43 1 3.7969 0.8126 6.5562 44 1 4.4094 -0.4274 5.4357 45 1 3.9022 -0.8195 8.4200 46 1 4.5147 -2.0595 7.2995 47 1 6.7610 -2.3015 10.2074 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424099445.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:01 Heat of formation + Delta-G solvation = -105.804915 kcal Electronic energy + Delta-G solvation = -22670.882283 eV Core-core repulsion = 19464.460123 eV Total energy + Delta-G solvation = -3206.422161 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.23641 -40.13656 -36.84770 -35.92921 -34.80357 -33.03584 -32.04158 -31.88362 -28.67273 -27.80859 -26.54804 -24.94791 -23.18219 -22.43020 -22.05743 -21.17150 -19.38203 -18.62474 -18.01557 -17.44822 -16.86079 -16.59986 -16.46340 -16.21145 -15.43460 -15.32726 -15.09578 -14.83943 -14.64621 -14.28428 -13.91246 -13.77886 -13.63101 -13.56866 -13.38257 -12.83296 -12.79813 -12.51718 -12.42832 -12.38983 -12.22624 -11.95005 -11.81565 -11.73668 -11.64561 -11.24752 -11.09676 -11.01852 -10.92244 -10.83568 -10.48984 -10.09388 -9.61193 -8.13589 -6.23782 1.41628 1.42643 1.52320 1.55557 2.21519 2.45086 3.19453 3.58446 3.62103 3.73289 3.78258 3.89514 4.11136 4.18901 4.28663 4.30939 4.32901 4.45749 4.47365 4.51927 4.64856 4.72853 4.78558 4.79785 4.87492 4.94364 4.96821 5.07194 5.11281 5.20151 5.25212 5.27486 5.28227 5.35830 5.45187 5.46220 5.51301 5.57923 5.66819 5.85143 5.99287 6.10511 6.31033 6.46184 6.54708 6.95130 7.16014 7.44381 8.97837 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020390 B = 0.003196 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.865110 B = 8760.199790 C = 9462.555454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 H 0.068 0.932 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.118 4.118 7 C -0.116 4.116 8 C -0.086 4.086 9 H 0.079 0.921 10 C 0.123 3.877 11 N -0.714 5.714 12 C 0.487 3.513 13 O -0.585 6.585 14 C 0.085 3.915 15 H 0.110 0.890 16 N -0.819 5.819 17 C -0.081 4.081 18 C 0.039 3.961 19 C -0.543 4.543 20 H 0.055 0.945 21 C 0.001 3.999 22 N -0.930 5.930 23 Si 0.960 3.040 24 H -0.264 1.264 25 H -0.281 1.281 26 H -0.277 1.277 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.066 0.934 36 H 0.061 0.939 37 H 0.066 0.934 38 H 0.063 0.937 39 H 0.051 0.949 40 H 0.412 0.588 41 H 0.345 0.655 42 H 0.346 0.654 43 H 0.041 0.959 44 H 0.067 0.933 45 H 0.005 0.995 46 H -0.005 1.005 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.866 -0.949 -23.599 25.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.101 4.101 3 H 0.087 0.913 4 C -0.148 4.148 5 C -0.158 4.158 6 C -0.156 4.156 7 C -0.154 4.154 8 C -0.105 4.105 9 H 0.097 0.903 10 C 0.000 4.000 11 N -0.366 5.366 12 C 0.272 3.728 13 O -0.466 6.466 14 C -0.031 4.031 15 H 0.128 0.872 16 N -0.348 5.348 17 C -0.120 4.120 18 C 0.002 3.998 19 C -0.581 4.581 20 H 0.073 0.927 21 C -0.197 4.197 22 N -0.570 5.570 23 Si 0.785 3.215 24 H -0.188 1.188 25 H -0.207 1.207 26 H -0.202 1.202 27 H 0.065 0.935 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.069 0.931 40 H 0.249 0.751 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.060 0.940 44 H 0.085 0.915 45 H 0.024 0.976 46 H 0.013 0.987 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.826 -0.806 -22.968 25.404 hybrid contribution 0.486 0.481 -0.106 0.692 sum -10.340 -0.325 -23.075 25.288 Atomic orbital electron populations 1.21996 0.95011 1.02374 1.01621 1.21034 0.96228 0.99000 0.93852 0.91320 1.21536 1.00598 0.95771 0.96944 1.21575 1.01084 0.95376 0.97745 1.21515 1.00843 0.98997 0.94201 1.21633 1.01128 0.94152 0.98458 1.21357 1.00826 0.95527 0.92752 0.90298 1.21505 0.98017 0.96625 0.83873 1.46103 1.48632 1.36502 1.05371 1.22354 0.80595 0.83193 0.86641 1.90631 1.38449 1.30038 1.87471 1.21635 0.94618 1.01099 0.85702 0.87192 1.58975 1.18844 1.18997 1.37979 1.21387 0.91687 0.99067 0.99844 1.18830 0.93470 0.94028 0.93469 1.21767 1.00090 1.20950 1.15319 0.92660 1.25904 1.02767 0.95314 0.95666 1.70112 1.38334 1.28658 1.19894 0.85481 0.79572 0.78432 0.78021 1.18821 1.20717 1.20233 0.93476 0.92026 0.91631 0.91980 0.91226 0.91543 0.91566 0.92000 0.91563 0.92040 0.91580 0.91913 0.93069 0.75110 0.84195 0.84057 0.94049 0.91462 0.97630 0.98671 0.92930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 8.15 71.98 0.59 -1.44 16 2 C -0.08 -1.11 2.72 -10.80 -0.03 -1.14 16 3 H 0.07 0.98 8.14 -2.39 -0.02 0.97 16 4 C -0.11 -1.27 5.45 30.59 0.17 -1.11 16 5 C -0.12 -1.31 5.65 30.59 0.17 -1.14 16 6 C -0.12 -1.44 5.92 30.59 0.18 -1.26 16 7 C -0.12 -1.63 4.80 30.59 0.15 -1.48 16 8 C -0.09 -1.32 2.00 -10.79 -0.02 -1.34 16 9 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 10 C 0.12 2.59 4.56 86.38 0.39 2.99 16 11 N -0.71 -16.94 5.28 -463.04 -2.45 -19.39 16 12 C 0.49 15.11 7.07 87.66 0.62 15.73 16 13 O -0.59 -21.75 16.25 -3.04 -0.05 -21.80 16 14 C 0.09 2.84 3.15 44.17 0.14 2.98 16 15 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 16 N -0.82 -28.14 8.44 -171.80 -1.45 -29.59 16 17 C -0.08 -3.30 4.78 30.60 0.15 -3.15 16 18 C 0.04 2.05 4.86 29.85 0.15 2.19 16 19 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 20 H 0.06 3.05 7.74 -2.91 -0.02 3.02 16 21 C 0.00 0.07 5.46 84.65 0.46 0.53 16 22 N -0.93 -56.78 13.29 21.45 0.28 -56.50 16 23 Si 0.96 44.55 29.54 68.60 2.03 46.58 16 24 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 27 H 0.05 0.73 6.54 -2.38 -0.02 0.71 16 28 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 29 H 0.06 0.82 4.81 -2.39 -0.01 0.81 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.07 0.71 6.43 -2.39 -0.02 0.70 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.06 0.89 7.18 -2.38 -0.02 0.88 16 37 H 0.07 0.95 6.43 -2.38 -0.02 0.94 16 38 H 0.06 1.40 6.71 -2.39 -0.02 1.38 16 39 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.41 8.16 7.65 -92.71 -0.71 7.45 16 41 H 0.34 12.17 8.58 -89.70 -0.77 11.40 16 42 H 0.35 10.20 9.06 -89.69 -0.81 9.39 16 43 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 44 H 0.07 2.50 8.14 -2.39 -0.02 2.49 16 45 H 0.01 0.30 7.75 -2.39 -0.02 0.29 16 46 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 47 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -68.20 360.84 0.38 -67.82 By element: Atomic # 1 Polarization: 32.57 SS G_CDS: -1.33 Total: 31.25 kcal Atomic # 6 Polarization: -21.71 SS G_CDS: 3.34 Total: -18.37 kcal Atomic # 7 Polarization: -101.86 SS G_CDS: -3.61 Total: -105.47 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.05 Total: -21.80 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -68.20 0.38 -67.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424099445.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.988 kcal (2) G-P(sol) polarization free energy of solvation -68.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds