Wall clock time and date at job start Tue Mar 31 2020 06:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46678 * 2 1 4 4 C 1.52996 * 109.47147 * 239.99571 * 2 1 3 5 5 C 1.53001 * 109.47238 * 299.99822 * 4 2 1 6 6 C 1.53007 * 109.46923 * 300.00062 * 5 4 2 7 7 C 1.53003 * 109.46963 * 60.00343 * 6 5 4 8 8 C 1.53001 * 109.47020 * 299.99597 * 7 6 5 9 9 H 1.09008 * 109.46939 * 300.00621 * 8 7 6 10 10 C 1.52996 * 109.47238 * 180.02562 * 8 7 6 11 11 N 1.46498 * 109.47059 * 64.99625 * 10 8 7 12 12 C 1.34777 * 119.99828 * 179.72339 * 11 10 8 13 13 O 1.21283 * 120.00222 * 0.28168 * 12 11 10 14 14 C 1.50703 * 120.00290 * 180.27728 * 12 11 10 15 15 H 1.09001 * 109.46694 * 39.99881 * 14 12 11 16 16 N 1.46893 * 109.47357 * 160.00092 * 14 12 11 17 17 C 1.52998 * 109.46955 * 280.00458 * 14 12 11 18 18 C 1.53001 * 109.47123 * 174.99639 * 17 14 12 19 19 C 1.50698 * 109.47412 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99778 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00112 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00120 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00086 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46949 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47306 * 120.00034 * 23 21 19 26 26 H 1.48499 * 109.47063 * 239.99987 * 23 21 19 27 27 H 1.09001 * 109.47177 * 300.00475 * 1 2 3 28 28 H 1.08997 * 109.46889 * 60.00697 * 1 2 3 29 29 H 1.09003 * 109.46618 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46613 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.46987 * 60.00039 * 4 2 1 32 32 H 1.09001 * 109.46786 * 180.02562 * 5 4 2 33 33 H 1.08994 * 109.47016 * 59.99904 * 5 4 2 34 34 H 1.08994 * 109.47145 * 299.99763 * 6 5 4 35 35 H 1.08997 * 109.46534 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46736 * 179.97438 * 7 6 5 37 37 H 1.08995 * 109.47226 * 59.99434 * 7 6 5 38 38 H 1.09004 * 109.47066 * 304.99893 * 10 8 7 39 39 H 1.08994 * 109.46974 * 185.00040 * 10 8 7 40 40 H 0.97001 * 120.00384 * 0.02562 * 11 10 8 41 41 H 1.00901 * 111.00090 * 60.00145 * 16 14 12 42 42 H 1.00901 * 111.00357 * 183.95255 * 16 14 12 43 43 H 1.08996 * 109.47387 * 294.99310 * 17 14 12 44 44 H 1.08998 * 109.47436 * 54.99647 * 17 14 12 45 45 H 1.09002 * 109.47374 * 299.99970 * 18 17 14 46 46 H 1.08998 * 109.46958 * 59.99715 * 18 17 14 47 47 H 0.97004 * 119.99921 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5301 -2.1638 -1.2491 6 6 2.0402 -2.8850 0.0003 7 6 1.5300 -2.1636 1.2495 8 6 2.0400 -0.7211 1.2494 9 1 3.1301 -0.7211 1.2493 10 6 1.5304 0.0001 2.4988 11 7 2.1150 -0.6176 3.6917 12 6 1.8112 -0.1406 4.9151 13 8 1.0500 0.7967 5.0287 14 6 2.4173 -0.7720 6.1419 15 1 3.4610 -1.0179 5.9460 16 7 2.3389 0.1695 7.2667 17 6 1.6494 -2.0485 6.4908 18 6 2.3393 -2.7555 7.6592 19 6 1.5834 -4.0131 8.0025 20 1 0.6991 -4.2812 7.4435 21 6 2.0201 -4.8210 9.0308 22 7 3.0968 -4.4943 9.7119 23 14 1.0827 -6.3796 9.4568 24 1 -0.0839 -6.5194 8.5486 25 1 1.9773 -7.5542 9.2987 26 1 0.6090 -6.3038 10.8622 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1301 -0.7209 -1.2493 31 1 1.6767 -0.2075 -2.1392 32 1 1.8939 -2.6778 -2.1388 33 1 0.4402 -2.1639 -1.2490 34 1 3.1301 -2.8850 0.0003 35 1 1.6765 -3.9125 0.0006 36 1 1.8931 -2.6777 2.1395 37 1 0.4401 -2.1637 1.2494 38 1 0.4441 -0.0769 2.5451 39 1 1.8187 1.0503 2.4551 40 1 2.7240 -1.3671 3.6009 41 1 1.3807 0.4132 7.4682 42 1 2.7963 -0.2050 8.0844 43 1 0.6282 -1.7926 6.7730 44 1 1.6321 -2.7103 5.6249 45 1 3.3606 -3.0115 7.3771 46 1 2.3567 -2.0937 8.5251 47 1 3.4038 -5.0625 10.4356 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424099446.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:04 Heat of formation + Delta-G solvation = -85.406157 kcal Electronic energy + Delta-G solvation = -22763.398109 eV Core-core repulsion = 19557.860505 eV Total energy + Delta-G solvation = -3205.537604 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.12012 -39.07092 -35.55638 -34.71837 -32.84283 -32.34757 -31.17725 -29.87074 -27.68599 -26.62337 -25.31623 -23.60355 -22.46605 -21.44216 -20.65315 -19.81224 -18.61408 -17.29571 -16.23777 -16.19438 -15.90055 -15.19431 -14.70617 -14.67175 -14.39692 -14.33935 -14.01713 -13.79718 -13.26466 -13.13134 -12.96466 -12.82714 -12.60267 -12.14575 -12.11348 -11.78466 -11.70964 -11.61515 -11.30409 -11.11055 -11.04170 -10.91959 -10.66350 -10.44596 -10.30637 -10.18120 -9.98519 -9.88218 -9.26478 -9.17456 -8.88505 -8.44427 -8.15913 -6.08769 -4.11761 3.00176 3.25866 3.33760 3.35001 3.38133 4.35536 4.39310 4.41858 4.46513 4.87819 4.93536 5.00736 5.07229 5.11111 5.17659 5.21614 5.23939 5.27686 5.34919 5.44304 5.52303 5.58485 5.61577 5.71547 5.75196 5.77482 5.79128 5.85761 5.89721 5.97789 6.02457 6.09261 6.14716 6.30240 6.32444 6.53360 6.61444 6.88617 7.46556 7.52859 7.62374 7.76068 7.88598 7.93245 8.31360 8.53380 8.94524 9.53216 11.02162 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018082 B = 0.003478 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.104990 B = 8047.698014 C = 9138.315056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.082 4.082 3 H 0.071 0.929 4 C -0.113 4.113 5 C -0.122 4.122 6 C -0.119 4.119 7 C -0.119 4.119 8 C -0.093 4.093 9 H 0.076 0.924 10 C 0.124 3.876 11 N -0.734 5.734 12 C 0.524 3.476 13 O -0.541 6.541 14 C 0.074 3.926 15 H 0.095 0.905 16 N -0.831 5.831 17 C -0.137 4.137 18 C 0.024 3.976 19 C -0.523 4.523 20 H 0.055 0.945 21 C 0.058 3.942 22 N -0.893 5.893 23 Si 0.892 3.108 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.400 0.600 41 H 0.345 0.655 42 H 0.354 0.646 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.018 0.982 46 H 0.018 0.982 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.923 6.304 -21.352 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.101 4.101 3 H 0.089 0.911 4 C -0.150 4.150 5 C -0.160 4.160 6 C -0.157 4.157 7 C -0.157 4.157 8 C -0.112 4.112 9 H 0.095 0.905 10 C 0.001 3.999 11 N -0.387 5.387 12 C 0.311 3.689 13 O -0.417 6.417 14 C -0.041 4.041 15 H 0.113 0.887 16 N -0.363 5.363 17 C -0.176 4.176 18 C -0.013 4.013 19 C -0.561 4.561 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.532 5.532 23 Si 0.720 3.280 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.209 1.209 27 H 0.077 0.923 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.235 0.765 41 H 0.158 0.842 42 H 0.169 0.831 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.037 0.963 46 H 0.036 0.964 47 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.951 7.441 -21.583 22.849 hybrid contribution -0.658 -2.093 0.732 2.313 sum -1.609 5.347 -20.851 21.586 Atomic orbital electron populations 1.22025 0.95158 1.02338 1.01783 1.21034 0.96162 0.99034 0.93908 0.91070 1.21548 1.00523 0.95712 0.97254 1.21584 1.01063 0.95548 0.97760 1.21525 1.00765 0.98917 0.94453 1.21659 1.01393 0.94552 0.98058 1.21407 1.00694 0.95416 0.93693 0.90537 1.21389 0.98436 0.96771 0.83333 1.46023 1.50103 1.36859 1.05731 1.20876 0.80870 0.82663 0.84494 1.90627 1.36029 1.28296 1.86711 1.21473 1.00625 0.92120 0.89882 0.88687 1.58740 1.23131 1.44736 1.09685 1.22368 0.99416 0.94409 1.01443 1.19109 0.95738 0.94889 0.91601 1.21222 1.11469 1.07032 1.16376 0.92676 1.25016 0.95076 0.98107 0.96152 1.69961 1.23257 1.38297 1.21689 0.86534 0.79949 0.83215 0.78309 1.19756 1.20942 1.20950 0.92263 0.92871 0.91887 0.92013 0.92051 0.92332 0.91686 0.92008 0.91960 0.91562 0.91366 0.91483 0.91880 0.76532 0.84166 0.83118 0.92733 0.92582 0.96341 0.96403 0.92944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 8.15 37.16 0.30 -0.92 16 2 C -0.08 -0.63 2.72 -90.62 -0.25 -0.88 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 4 C -0.11 -0.78 5.45 -26.73 -0.15 -0.92 16 5 C -0.12 -0.86 5.65 -26.73 -0.15 -1.01 16 6 C -0.12 -0.93 5.92 -26.73 -0.16 -1.09 16 7 C -0.12 -1.05 4.80 -26.73 -0.13 -1.18 16 8 C -0.09 -0.81 2.00 -90.62 -0.18 -0.99 16 9 H 0.08 0.65 8.14 -51.92 -0.42 0.22 16 10 C 0.12 1.42 4.56 -4.04 -0.02 1.40 16 11 N -0.73 -9.54 5.28 -60.30 -0.32 -9.86 16 12 C 0.52 8.83 7.08 -10.98 -0.08 8.76 16 13 O -0.54 -10.82 16.25 5.55 0.09 -10.73 16 14 C 0.07 1.28 3.21 -68.87 -0.22 1.06 16 15 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 16 N -0.83 -14.65 8.94 -5.66 -0.05 -14.70 16 17 C -0.14 -2.69 4.78 -26.73 -0.13 -2.82 16 18 C 0.02 0.58 4.74 -27.88 -0.13 0.44 16 19 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 20 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 21 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -26.04 13.29 55.43 0.74 -25.30 16 23 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H 0.06 0.52 6.55 -51.93 -0.34 0.18 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.50 4.81 -51.93 -0.25 0.25 16 30 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.47 6.43 -51.93 -0.33 0.13 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.63 7.18 -51.93 -0.37 0.26 16 37 H 0.07 0.64 6.43 -51.93 -0.33 0.30 16 38 H 0.07 0.83 6.71 -51.93 -0.35 0.49 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.40 4.45 7.66 -40.82 -0.31 4.14 16 41 H 0.35 6.18 8.58 -39.29 -0.34 5.84 16 42 H 0.35 6.22 7.55 -39.29 -0.30 5.92 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 47 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 358.90 15.07 5.41 5.41 Total: -1.00 -30.93 358.90 -9.17 -40.10 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: -8.32 Total: 10.14 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: -1.70 Total: -11.30 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.37 Total: -49.86 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.09 Total: -10.73 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.93 -9.17 -40.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424099446.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.311 kcal (2) G-P(sol) polarization free energy of solvation -30.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds