Wall clock time and date at job start Tue Mar 31 2020 06:07:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 109.46678 * 2 1 4 4 C 1.52996 * 109.47147 * 239.99571 * 2 1 3 5 5 C 1.53001 * 109.47238 * 299.99822 * 4 2 1 6 6 C 1.53007 * 109.46923 * 300.00062 * 5 4 2 7 7 C 1.53003 * 109.46963 * 60.00343 * 6 5 4 8 8 C 1.53001 * 109.47020 * 299.99597 * 7 6 5 9 9 H 1.09008 * 109.46939 * 300.00621 * 8 7 6 10 10 C 1.52996 * 109.47238 * 180.02562 * 8 7 6 11 11 N 1.46498 * 109.47059 * 64.99625 * 10 8 7 12 12 C 1.34777 * 119.99828 * 179.72339 * 11 10 8 13 13 O 1.21283 * 120.00222 * 0.28168 * 12 11 10 14 14 C 1.50703 * 120.00290 * 180.27728 * 12 11 10 15 15 H 1.09001 * 109.46694 * 39.99881 * 14 12 11 16 16 N 1.46893 * 109.47357 * 160.00092 * 14 12 11 17 17 C 1.52998 * 109.46955 * 280.00458 * 14 12 11 18 18 C 1.53001 * 109.47123 * 174.99639 * 17 14 12 19 19 C 1.50698 * 109.47412 * 180.02562 * 18 17 14 20 20 H 1.08001 * 119.99778 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00112 * 180.02562 * 19 18 17 22 22 N 1.31516 * 120.00120 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 120.00086 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46949 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47306 * 120.00034 * 23 21 19 26 26 H 1.48499 * 109.47063 * 239.99987 * 23 21 19 27 27 H 1.09001 * 109.47177 * 300.00475 * 1 2 3 28 28 H 1.08997 * 109.46889 * 60.00697 * 1 2 3 29 29 H 1.09003 * 109.46618 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46613 * 179.97438 * 4 2 1 31 31 H 1.09001 * 109.46987 * 60.00039 * 4 2 1 32 32 H 1.09001 * 109.46786 * 180.02562 * 5 4 2 33 33 H 1.08994 * 109.47016 * 59.99904 * 5 4 2 34 34 H 1.08994 * 109.47145 * 299.99763 * 6 5 4 35 35 H 1.08997 * 109.46534 * 179.97438 * 6 5 4 36 36 H 1.09001 * 109.46736 * 179.97438 * 7 6 5 37 37 H 1.08995 * 109.47226 * 59.99434 * 7 6 5 38 38 H 1.09004 * 109.47066 * 304.99893 * 10 8 7 39 39 H 1.08994 * 109.46974 * 185.00040 * 10 8 7 40 40 H 0.97001 * 120.00384 * 0.02562 * 11 10 8 41 41 H 1.00901 * 111.00090 * 60.00145 * 16 14 12 42 42 H 1.00901 * 111.00357 * 183.95255 * 16 14 12 43 43 H 1.08996 * 109.47387 * 294.99310 * 17 14 12 44 44 H 1.08998 * 109.47436 * 54.99647 * 17 14 12 45 45 H 1.09002 * 109.47374 * 299.99970 * 18 17 14 46 46 H 1.08998 * 109.46958 * 59.99715 * 18 17 14 47 47 H 0.97004 * 119.99921 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 1.5301 -2.1638 -1.2491 6 6 2.0402 -2.8850 0.0003 7 6 1.5300 -2.1636 1.2495 8 6 2.0400 -0.7211 1.2494 9 1 3.1301 -0.7211 1.2493 10 6 1.5304 0.0001 2.4988 11 7 2.1150 -0.6176 3.6917 12 6 1.8112 -0.1406 4.9151 13 8 1.0500 0.7967 5.0287 14 6 2.4173 -0.7720 6.1419 15 1 3.4610 -1.0179 5.9460 16 7 2.3389 0.1695 7.2667 17 6 1.6494 -2.0485 6.4908 18 6 2.3393 -2.7555 7.6592 19 6 1.5834 -4.0131 8.0025 20 1 0.6991 -4.2812 7.4435 21 6 2.0201 -4.8210 9.0308 22 7 3.0968 -4.4943 9.7119 23 14 1.0827 -6.3796 9.4568 24 1 -0.0839 -6.5194 8.5486 25 1 1.9773 -7.5542 9.2987 26 1 0.6090 -6.3038 10.8622 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1301 -0.7209 -1.2493 31 1 1.6767 -0.2075 -2.1392 32 1 1.8939 -2.6778 -2.1388 33 1 0.4402 -2.1639 -1.2490 34 1 3.1301 -2.8850 0.0003 35 1 1.6765 -3.9125 0.0006 36 1 1.8931 -2.6777 2.1395 37 1 0.4401 -2.1637 1.2494 38 1 0.4441 -0.0769 2.5451 39 1 1.8187 1.0503 2.4551 40 1 2.7240 -1.3671 3.6009 41 1 1.3807 0.4132 7.4682 42 1 2.7963 -0.2050 8.0844 43 1 0.6282 -1.7926 6.7730 44 1 1.6321 -2.7103 5.6249 45 1 3.3606 -3.0115 7.3771 46 1 2.3567 -2.0937 8.5251 47 1 3.4038 -5.0625 10.4356 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424099446.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:03 Heat of formation + Delta-G solvation = -105.464743 kcal Electronic energy + Delta-G solvation = -22764.267914 eV Core-core repulsion = 19557.860505 eV Total energy + Delta-G solvation = -3206.407410 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.15782 -40.08069 -37.11575 -35.85997 -34.83455 -33.01866 -31.99273 -31.68224 -28.73360 -27.78360 -26.55136 -25.11438 -23.18371 -22.45784 -22.03697 -21.15793 -19.36969 -18.79756 -18.07714 -17.29285 -16.73509 -16.48029 -16.23943 -15.89261 -15.67746 -15.38262 -14.94059 -14.92761 -14.64283 -14.44079 -14.09559 -13.76454 -13.55879 -13.55091 -13.42740 -12.95467 -12.80638 -12.66672 -12.50698 -12.41236 -12.35715 -11.92839 -11.81421 -11.77002 -11.70660 -11.28792 -11.07900 -10.99999 -10.81760 -10.67915 -10.56597 -10.05299 -9.64241 -8.21694 -6.31979 1.38518 1.40174 1.51905 1.63231 2.17882 2.39988 3.12024 3.64092 3.74677 3.76042 3.78826 3.87072 4.12661 4.21413 4.25590 4.30730 4.33370 4.47750 4.49021 4.54109 4.66046 4.68181 4.75109 4.81417 4.84503 4.90490 4.98748 5.08737 5.09157 5.13648 5.22040 5.29379 5.29993 5.38053 5.46641 5.47228 5.49213 5.54343 5.65626 5.68617 5.80670 6.07362 6.21277 6.47419 6.55366 6.83668 7.25359 7.37230 8.89261 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018082 B = 0.003478 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.104990 B = 8047.698014 C = 9138.315056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.081 4.081 3 H 0.074 0.926 4 C -0.109 4.109 5 C -0.121 4.121 6 C -0.117 4.117 7 C -0.119 4.119 8 C -0.083 4.083 9 H 0.085 0.915 10 C 0.125 3.875 11 N -0.717 5.717 12 C 0.525 3.475 13 O -0.575 6.575 14 C 0.080 3.920 15 H 0.109 0.891 16 N -0.831 5.831 17 C -0.120 4.120 18 C 0.030 3.970 19 C -0.544 4.544 20 H 0.054 0.946 21 C 0.005 3.995 22 N -0.927 5.927 23 Si 0.959 3.041 24 H -0.266 1.266 25 H -0.276 1.276 26 H -0.280 1.280 27 H 0.046 0.954 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.058 0.942 40 H 0.411 0.589 41 H 0.343 0.657 42 H 0.352 0.648 43 H 0.042 0.958 44 H 0.066 0.934 45 H 0.003 0.997 46 H 0.002 0.998 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.943 5.636 -22.982 23.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.100 4.100 3 H 0.092 0.908 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.155 4.155 7 C -0.157 4.157 8 C -0.102 4.102 9 H 0.103 0.897 10 C 0.002 3.998 11 N -0.370 5.370 12 C 0.311 3.689 13 O -0.454 6.454 14 C -0.035 4.035 15 H 0.127 0.873 16 N -0.362 5.362 17 C -0.159 4.159 18 C -0.007 4.007 19 C -0.582 4.582 20 H 0.073 0.927 21 C -0.193 4.193 22 N -0.567 5.567 23 Si 0.784 3.216 24 H -0.190 1.190 25 H -0.202 1.202 26 H -0.206 1.206 27 H 0.065 0.935 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.248 0.752 41 H 0.156 0.844 42 H 0.167 0.833 43 H 0.061 0.939 44 H 0.084 0.916 45 H 0.021 0.979 46 H 0.020 0.980 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.957 6.755 -23.250 24.231 hybrid contribution -0.641 -1.870 1.220 2.323 sum -1.598 4.885 -22.030 22.622 Atomic orbital electron populations 1.22012 0.95364 1.02200 1.01632 1.21037 0.95964 0.99200 0.93783 0.90799 1.21528 1.00753 0.95462 0.96942 1.21581 1.00967 0.95657 0.97645 1.21510 1.00966 0.98811 0.94191 1.21648 1.00986 0.94612 0.98419 1.21348 1.01037 0.95087 0.92724 0.89703 1.21492 0.97864 0.96812 0.83630 1.45935 1.49361 1.36516 1.05162 1.20722 0.80496 0.82368 0.85297 1.90615 1.37586 1.29922 1.87258 1.21419 1.01002 0.90857 0.90232 0.87306 1.58758 1.22975 1.44651 1.09803 1.22118 0.98453 0.95410 0.99963 1.18972 0.94980 0.94110 0.92675 1.21645 1.11709 1.08273 1.16557 0.92749 1.25865 0.95955 1.01421 0.96097 1.70069 1.24672 1.39665 1.22251 0.85488 0.78798 0.79249 0.78053 1.18998 1.20202 1.20599 0.93513 0.91934 0.92020 0.91593 0.91158 0.91479 0.91880 0.91617 0.92044 0.92360 0.92060 0.92490 0.92391 0.75199 0.84379 0.83268 0.93869 0.91553 0.97890 0.97974 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.25 8.15 71.98 0.59 -1.66 16 2 C -0.08 -1.10 2.72 -10.79 -0.03 -1.13 16 3 H 0.07 0.99 8.14 -2.39 -0.02 0.98 16 4 C -0.11 -1.25 5.45 30.59 0.17 -1.08 16 5 C -0.12 -1.45 5.65 30.60 0.17 -1.27 16 6 C -0.12 -1.61 5.92 30.60 0.18 -1.43 16 7 C -0.12 -1.94 4.80 30.60 0.15 -1.79 16 8 C -0.08 -1.31 2.00 -10.79 -0.02 -1.33 16 9 H 0.08 1.24 8.14 -2.38 -0.02 1.22 16 10 C 0.13 2.74 4.56 86.38 0.39 3.13 16 11 N -0.72 -17.85 5.28 -463.07 -2.45 -20.30 16 12 C 0.52 17.33 7.08 87.66 0.62 17.95 16 13 O -0.57 -22.90 16.25 -3.04 -0.05 -22.95 16 14 C 0.08 2.72 3.21 44.17 0.14 2.86 16 15 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 16 N -0.83 -29.25 8.94 -171.81 -1.54 -30.78 16 17 C -0.12 -4.68 4.78 30.59 0.15 -4.54 16 18 C 0.03 1.46 4.74 29.85 0.14 1.60 16 19 C -0.54 -29.88 9.11 25.60 0.23 -29.65 16 20 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 21 C 0.01 0.28 5.46 84.65 0.46 0.74 16 22 N -0.93 -54.29 13.29 21.45 0.28 -54.00 16 23 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 25 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 26 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 27 H 0.05 0.79 6.55 -2.39 -0.02 0.77 16 28 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.06 0.91 4.81 -2.39 -0.01 0.90 16 30 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.06 0.79 6.43 -2.39 -0.02 0.77 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.06 1.03 7.18 -2.39 -0.02 1.01 16 37 H 0.06 1.09 6.43 -2.39 -0.02 1.07 16 38 H 0.06 1.40 6.71 -2.38 -0.02 1.38 16 39 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.41 8.48 7.66 -92.71 -0.71 7.77 16 41 H 0.34 12.37 8.58 -89.69 -0.77 11.60 16 42 H 0.35 12.50 7.55 -89.69 -0.68 11.82 16 43 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 45 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 46 H 0.00 0.10 6.87 -2.39 -0.02 0.09 16 47 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 Total: -1.00 -65.10 358.90 0.43 -64.66 By element: Atomic # 1 Polarization: 36.78 SS G_CDS: -1.19 Total: 35.59 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: 3.34 Total: -17.60 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -3.70 Total: -105.08 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: -0.05 Total: -22.95 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -65.10 0.43 -64.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424099446.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.801 kcal (2) G-P(sol) polarization free energy of solvation -65.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds