Wall clock time and date at job start Tue Mar 31 2020 06:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.47286 * 2 1 4 4 C 1.53004 * 109.47001 * 239.99991 * 2 1 3 5 5 C 1.53003 * 109.46794 * 179.97438 * 4 2 1 6 6 C 1.52994 * 109.47290 * 60.00141 * 5 4 2 7 7 C 1.53004 * 109.47086 * 299.99680 * 6 5 4 8 8 H 1.08995 * 109.47094 * 300.00240 * 7 6 5 9 9 N 1.46497 * 109.46959 * 179.97438 * 7 6 5 10 10 C 1.46493 * 120.00251 * 299.99818 * 9 7 6 11 11 C 1.34781 * 119.99716 * 120.00479 * 9 7 6 12 12 O 1.21286 * 119.99983 * 359.97438 * 11 9 7 13 13 C 1.50699 * 120.00160 * 179.97438 * 11 9 7 14 14 H 1.09002 * 109.46753 * 39.99710 * 13 11 9 15 15 N 1.46898 * 109.47192 * 159.99754 * 13 11 9 16 16 C 1.52992 * 109.47482 * 279.99980 * 13 11 9 17 17 C 1.52997 * 109.47482 * 174.99860 * 16 13 11 18 18 C 1.50701 * 109.47212 * 179.97438 * 17 16 13 19 19 H 1.07998 * 120.00129 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99861 * 179.97438 * 18 17 16 21 21 N 1.31510 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99734 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47294 * 60.00559 * 22 20 18 24 24 H 1.48503 * 109.46954 * 180.02562 * 22 20 18 25 25 H 1.48503 * 109.47431 * 300.00157 * 22 20 18 26 26 C 1.52994 * 109.47244 * 120.00035 * 2 1 3 27 27 H 1.09003 * 109.47228 * 300.00384 * 1 2 3 28 28 H 1.09002 * 109.47470 * 60.00084 * 1 2 3 29 29 H 1.09002 * 109.47286 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47094 * 299.99707 * 4 2 1 31 31 H 1.08998 * 109.47003 * 60.00188 * 4 2 1 32 32 H 1.08996 * 109.46861 * 179.97438 * 5 4 2 33 33 H 1.08995 * 109.47118 * 299.99762 * 5 4 2 34 34 H 1.09000 * 109.47263 * 179.97438 * 6 5 4 35 35 H 1.09002 * 109.47007 * 59.99570 * 6 5 4 36 36 H 1.09000 * 109.47686 * 270.00010 * 10 9 7 37 37 H 1.09001 * 109.47260 * 30.00556 * 10 9 7 38 38 H 1.09006 * 109.46733 * 150.00314 * 10 9 7 39 39 H 1.00906 * 111.00043 * 296.04677 * 15 13 11 40 40 H 1.00899 * 111.00057 * 59.99855 * 15 13 11 41 41 H 1.09002 * 109.47103 * 54.99613 * 16 13 11 42 42 H 1.08998 * 109.46862 * 295.00425 * 16 13 11 43 43 H 1.09002 * 109.47153 * 59.99783 * 17 16 13 44 44 H 1.09001 * 109.46832 * 299.99974 * 17 16 13 45 45 H 0.97002 * 119.99768 * 179.97438 * 21 20 18 46 46 H 1.08995 * 109.47350 * 59.99987 * 26 2 1 47 47 H 1.09003 * 109.46666 * 299.99925 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4416 -0.0004 7 6 3.5705 -0.7203 1.2489 8 1 3.9334 0.3075 1.2486 9 7 4.0589 -1.4109 2.4450 10 6 3.7049 -2.8134 2.6769 11 6 4.8337 -0.7558 3.3322 12 8 5.1270 0.4052 3.1401 13 6 5.3356 -1.4660 4.5630 14 1 5.6248 -2.4842 4.3024 15 7 6.4992 -0.7492 5.1016 16 6 4.2275 -1.5046 5.6172 17 6 4.6932 -2.3324 6.8166 18 6 3.6019 -2.3699 7.8552 19 1 2.6693 -1.8551 7.6774 20 6 3.7938 -3.0622 9.0321 21 7 4.9292 -3.6895 9.2483 22 14 2.4408 -3.1092 10.3191 23 1 1.2227 -3.7258 9.7347 24 1 2.8929 -3.9127 11.4834 25 1 2.1313 -1.7263 10.7629 26 6 2.0400 -0.7212 1.2492 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.6766 -1.7489 -1.2492 31 1 1.6766 -0.2074 -2.1392 32 1 3.9333 -1.2349 -2.1393 33 1 3.9329 0.3071 -1.2498 34 1 5.1705 -1.4415 -0.0008 35 1 3.7175 -2.4693 -0.0002 36 1 2.7781 -2.8647 3.2483 37 1 3.5700 -3.3172 1.7197 38 1 4.5035 -3.3020 3.2353 39 1 7.2682 -0.7657 4.4486 40 1 6.2568 0.1980 5.3509 41 1 3.3336 -1.9574 5.1882 42 1 4.0001 -0.4895 5.9425 43 1 5.5872 -1.8796 7.2455 44 1 4.9206 -3.3476 6.4911 45 1 5.0643 -4.1763 10.0764 46 1 1.6767 -1.7489 1.2492 47 1 1.6766 -0.2073 2.1391 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424102480.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:52 Heat of formation + Delta-G solvation = -91.596166 kcal Electronic energy + Delta-G solvation = -23232.373262 eV Core-core repulsion = 20026.567239 eV Total energy + Delta-G solvation = -3205.806023 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.53941 -39.55284 -36.84387 -36.35547 -34.82663 -33.23558 -31.94199 -31.10303 -28.16424 -27.77221 -27.30655 -25.58699 -23.37556 -22.57847 -21.73959 -20.63136 -20.06296 -18.54521 -18.22621 -17.38566 -16.90678 -16.49121 -16.23663 -16.00224 -15.49724 -15.30639 -15.09979 -14.72829 -14.39882 -14.29226 -14.02741 -13.71526 -13.61469 -13.53240 -13.28075 -13.10489 -12.80117 -12.77025 -12.52339 -12.50838 -12.22540 -12.08800 -11.85259 -11.74761 -11.61879 -11.43676 -11.31659 -11.21208 -11.13190 -10.96041 -10.48033 -9.66337 -9.61840 -8.13274 -6.23653 1.41737 1.44770 1.47098 1.52687 1.96902 2.44954 3.19605 3.44181 3.61911 3.73865 3.76370 3.90261 4.00240 4.08667 4.18200 4.22879 4.31178 4.41453 4.47888 4.51010 4.59546 4.64616 4.73974 4.77495 4.80935 4.87038 4.93370 4.97170 5.03452 5.11682 5.12759 5.23280 5.23914 5.29318 5.37090 5.38787 5.54329 5.56608 5.59124 5.83969 5.98288 6.06210 6.29975 6.31804 6.48625 6.94242 7.05725 7.44325 8.97742 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021295 B = 0.003697 C = 0.003357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.564726 B = 7572.299765 C = 8339.007736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.060 0.940 4 C -0.109 4.109 5 C -0.114 4.114 6 C -0.120 4.120 7 C 0.135 3.865 8 H 0.069 0.931 9 N -0.603 5.603 10 C 0.066 3.934 11 C 0.484 3.516 12 O -0.587 6.587 13 C 0.085 3.915 14 H 0.111 0.889 15 N -0.819 5.819 16 C -0.079 4.079 17 C 0.042 3.958 18 C -0.545 4.545 19 H 0.054 0.946 20 C 0.003 3.997 21 N -0.929 5.929 22 Si 0.959 3.041 23 H -0.265 1.265 24 H -0.283 1.283 25 H -0.272 1.272 26 C -0.116 4.116 27 H 0.046 0.954 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.077 0.923 39 H 0.346 0.654 40 H 0.344 0.656 41 H 0.066 0.934 42 H 0.037 0.963 43 H 0.004 0.996 44 H -0.004 1.004 45 H 0.262 0.738 46 H 0.078 0.922 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.148 2.480 -23.739 24.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.078 0.922 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.158 4.158 7 C 0.032 3.968 8 H 0.087 0.913 9 N -0.334 5.334 10 C -0.076 4.076 11 C 0.272 3.728 12 O -0.468 6.468 13 C -0.030 4.030 14 H 0.128 0.872 15 N -0.347 5.347 16 C -0.117 4.117 17 C 0.005 3.995 18 C -0.583 4.583 19 H 0.072 0.928 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.784 3.216 23 H -0.190 1.190 24 H -0.209 1.209 25 H -0.198 1.198 26 C -0.154 4.154 27 H 0.065 0.935 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.080 0.920 37 H 0.118 0.882 38 H 0.096 0.904 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.085 0.915 42 H 0.056 0.944 43 H 0.022 0.978 44 H 0.014 0.986 45 H 0.071 0.929 46 H 0.097 0.903 47 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -5.907 2.404 -23.123 23.986 hybrid contribution -0.426 0.705 0.375 0.906 sum -6.333 3.109 -22.748 23.817 Atomic orbital electron populations 1.21794 0.94173 1.02322 1.01851 1.21091 0.96270 0.99109 0.94285 0.92189 1.21598 0.94775 1.01237 0.97070 1.21489 0.96160 1.00472 0.97063 1.21837 1.00195 1.00443 0.93370 1.21188 0.94577 0.96843 0.84205 0.91286 1.48103 1.49491 1.13471 1.22320 1.22094 1.01827 0.79976 1.03712 1.22431 0.77861 0.87066 0.85493 1.90607 1.60105 1.18460 1.77657 1.21674 0.92749 0.98614 0.89977 0.87160 1.59010 1.07365 1.22057 1.46307 1.21356 0.95640 0.99745 0.95005 1.18797 0.95394 0.93580 0.91713 1.21683 1.01739 1.31843 1.03018 0.92769 1.25883 0.97920 0.95140 1.00512 1.70095 1.25984 1.34456 1.26367 0.85605 0.79476 0.78260 0.78307 1.18980 1.20863 1.19750 1.21895 0.93497 1.01888 0.98123 0.93502 0.91548 0.92002 0.90914 0.90667 0.90019 0.92644 0.92708 0.89990 0.91988 0.88168 0.90419 0.84134 0.84282 0.91532 0.94420 0.97751 0.98561 0.92896 0.90311 0.93784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 9.19 71.98 0.66 -1.33 16 2 C -0.09 -1.40 2.72 -10.80 -0.03 -1.43 16 3 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 4 C -0.11 -1.34 5.20 30.60 0.16 -1.18 16 5 C -0.11 -1.55 5.92 30.59 0.18 -1.37 16 6 C -0.12 -2.04 5.18 30.59 0.16 -1.88 16 7 C 0.13 3.08 2.52 45.01 0.11 3.19 16 8 H 0.07 1.99 6.90 -2.39 -0.02 1.97 16 9 N -0.60 -15.66 2.76 -822.49 -2.27 -17.93 16 10 C 0.07 1.37 8.62 127.77 1.10 2.47 16 11 C 0.48 16.01 6.92 87.66 0.61 16.61 16 12 O -0.59 -22.84 15.58 -3.05 -0.05 -22.89 16 13 C 0.09 2.96 2.42 44.17 0.11 3.07 16 14 H 0.11 3.55 6.31 -2.39 -0.02 3.54 16 15 N -0.82 -29.06 8.44 -171.81 -1.45 -30.51 16 16 C -0.08 -3.28 4.71 30.59 0.14 -3.14 16 17 C 0.04 2.22 4.86 29.85 0.15 2.37 16 18 C -0.54 -31.13 9.11 25.60 0.23 -30.89 16 19 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 20 C 0.00 0.20 5.46 84.66 0.46 0.66 16 21 N -0.93 -56.71 13.29 21.45 0.28 -56.42 16 22 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 26 C -0.12 -2.28 4.49 30.61 0.14 -2.15 16 27 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.08 1.15 6.66 -2.39 -0.02 1.13 16 36 H 0.06 1.33 7.65 -2.39 -0.02 1.31 16 37 H 0.10 1.46 6.43 -2.39 -0.02 1.44 16 38 H 0.08 1.67 5.94 -2.38 -0.01 1.66 16 39 H 0.35 10.58 9.06 -89.69 -0.81 9.77 16 40 H 0.34 12.57 8.58 -89.69 -0.77 11.80 16 41 H 0.07 2.57 6.94 -2.39 -0.02 2.55 16 42 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.00 0.24 7.75 -2.39 -0.02 0.22 16 44 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 45 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 46 H 0.08 1.36 7.67 -2.39 -0.02 1.34 16 47 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -69.09 361.90 2.09 -67.01 By element: Atomic # 1 Polarization: 29.86 SS G_CDS: -0.64 Total: 29.23 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 4.18 Total: -15.00 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -3.44 Total: -104.86 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -0.05 Total: -22.89 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -69.09 2.09 -67.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424102480.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.589 kcal (2) G-P(sol) polarization free energy of solvation -69.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds