Wall clock time and date at job start Tue Mar 31 2020 06:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47105 * 2 1 4 4 C 1.53001 * 109.47373 * 239.99803 * 2 1 3 5 5 C 1.52994 * 109.47097 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47242 * 60.00267 * 5 4 2 7 7 C 1.53001 * 109.46857 * 299.99881 * 6 5 4 8 8 H 1.09000 * 109.47166 * 299.99894 * 7 6 5 9 9 N 1.46501 * 109.47103 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99784 * 299.99714 * 9 7 6 11 11 C 1.34781 * 120.00182 * 119.99896 * 9 7 6 12 12 O 1.21279 * 119.99898 * 359.97438 * 11 9 7 13 13 C 1.50696 * 119.99816 * 179.97438 * 11 9 7 14 14 H 1.08999 * 109.47475 * 319.99944 * 13 11 9 15 15 N 1.46898 * 109.47119 * 199.99752 * 13 11 9 16 16 C 1.53000 * 109.47146 * 80.00269 * 13 11 9 17 17 C 1.53001 * 109.47355 * 184.99852 * 16 13 11 18 18 C 1.50694 * 109.47168 * 179.97438 * 17 16 13 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99902 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99854 * 179.72538 * 20 18 17 23 23 H 1.48504 * 109.47032 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46816 * 120.00323 * 22 20 18 25 25 H 1.48495 * 109.46630 * 240.00111 * 22 20 18 26 26 C 1.52998 * 109.46795 * 119.99756 * 2 1 3 27 27 H 1.08996 * 109.47271 * 300.00401 * 1 2 3 28 28 H 1.09006 * 109.46977 * 60.00474 * 1 2 3 29 29 H 1.09000 * 109.47105 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47166 * 300.00159 * 4 2 1 31 31 H 1.09004 * 109.46816 * 59.99713 * 4 2 1 32 32 H 1.09005 * 109.47202 * 179.97438 * 5 4 2 33 33 H 1.09000 * 109.47614 * 299.99730 * 5 4 2 34 34 H 1.09003 * 109.47162 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47146 * 59.99787 * 6 5 4 36 36 H 1.08997 * 109.47119 * 270.00213 * 10 9 7 37 37 H 1.08997 * 109.46974 * 30.00213 * 10 9 7 38 38 H 1.09002 * 109.46764 * 150.00277 * 10 9 7 39 39 H 1.00898 * 111.00196 * 300.00727 * 15 13 11 40 40 H 1.00901 * 110.99633 * 63.95364 * 15 13 11 41 41 H 1.09000 * 109.46966 * 64.99539 * 16 13 11 42 42 H 1.09002 * 109.46807 * 304.99561 * 16 13 11 43 43 H 1.08998 * 109.46837 * 59.99832 * 17 16 13 44 44 H 1.09002 * 109.46926 * 299.99636 * 17 16 13 45 45 H 0.97001 * 119.99646 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.47095 * 60.00238 * 26 2 1 47 47 H 1.08996 * 109.47083 * 299.99958 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0004 7 6 3.5694 -0.7221 1.2496 8 1 3.9331 0.3054 1.2498 9 7 4.0577 -1.4127 2.4458 10 6 3.7037 -2.8153 2.6777 11 6 4.8325 -0.7577 3.3330 12 8 5.1259 0.4033 3.1409 13 6 5.3343 -1.4679 4.5638 14 1 4.5447 -2.1042 4.9635 15 7 5.7244 -0.4774 5.5760 16 6 6.5460 -2.3276 4.1981 17 6 6.9789 -3.1439 5.4176 18 6 8.1719 -3.9911 5.0573 19 1 8.5804 -3.9517 4.0583 20 6 8.7421 -4.8167 6.0030 21 7 8.2445 -4.8651 7.2195 22 14 10.2163 -5.8726 5.5542 23 1 10.5766 -5.6408 4.1323 24 1 11.3664 -5.5110 6.4211 25 1 9.8779 -7.3048 5.7525 26 6 2.0399 -0.7212 1.2493 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.9334 -1.2361 -2.1386 33 1 3.9338 0.3057 -1.2487 34 1 5.1695 -1.4434 0.0009 35 1 3.7158 -2.4709 0.0002 36 1 2.7768 -2.8664 3.2489 37 1 3.5688 -3.3189 1.7205 38 1 4.5022 -3.3039 3.2361 39 1 6.4557 0.1252 5.2293 40 1 4.9272 0.0605 5.8814 41 1 7.3665 -1.6834 3.8822 42 1 6.2802 -3.0028 3.3847 43 1 6.1583 -3.7881 5.7335 44 1 7.2446 -2.4688 6.2311 45 1 8.6459 -5.4457 7.8849 46 1 1.6766 -1.7489 1.2493 47 1 1.6766 -0.2073 2.1392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424102483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:55 Heat of formation + Delta-G solvation = -71.860099 kcal Electronic energy + Delta-G solvation = -23200.082426 eV Core-core repulsion = 19995.132223 eV Total energy + Delta-G solvation = -3204.950203 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.38667 -38.59623 -35.30688 -35.24266 -32.80780 -32.49879 -30.32910 -29.98764 -26.84536 -26.66737 -26.31227 -23.93117 -22.39466 -21.41870 -20.28704 -19.79693 -18.86316 -17.10636 -16.46991 -16.06382 -15.45224 -15.29472 -15.08960 -14.65300 -14.43802 -14.32659 -14.01842 -13.46131 -13.34122 -13.01061 -12.87998 -12.62784 -12.37217 -12.09270 -12.06737 -11.96071 -11.82092 -11.51455 -11.30874 -11.14670 -10.90240 -10.82173 -10.61940 -10.52823 -10.50181 -10.40633 -9.99957 -9.77258 -9.35313 -8.98335 -8.57126 -8.33304 -8.17272 -5.93833 -3.95887 2.79178 3.07703 3.33774 3.41462 3.45292 4.38109 4.49699 4.50726 4.59713 4.72045 4.90234 4.90305 5.07254 5.10491 5.19800 5.24385 5.28476 5.36760 5.40040 5.41785 5.43350 5.50144 5.56033 5.59007 5.68477 5.77208 5.80685 5.85825 5.89813 5.92385 5.98326 6.03213 6.13057 6.23821 6.42677 6.61737 6.69091 7.09096 7.37540 7.56134 7.76512 7.82367 7.96398 8.13489 8.32646 8.48690 9.12374 9.67339 11.17057 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025669 B = 0.003471 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.568010 B = 8065.818052 C = 8554.700728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.070 0.930 4 C -0.114 4.114 5 C -0.116 4.116 6 C -0.129 4.129 7 C 0.137 3.863 8 H 0.097 0.903 9 N -0.611 5.611 10 C 0.067 3.933 11 C 0.485 3.515 12 O -0.556 6.556 13 C 0.078 3.922 14 H 0.097 0.903 15 N -0.807 5.807 16 C -0.097 4.097 17 C 0.032 3.968 18 C -0.521 4.521 19 H 0.052 0.948 20 C 0.058 3.942 21 N -0.892 5.892 22 Si 0.888 3.112 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.285 1.285 26 C -0.120 4.120 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.054 0.946 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.347 0.653 40 H 0.333 0.667 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.013 0.987 44 H 0.035 0.965 45 H 0.259 0.741 46 H 0.065 0.935 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.829 7.389 -15.197 23.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.089 0.911 4 C -0.152 4.152 5 C -0.154 4.154 6 C -0.167 4.167 7 C 0.034 3.966 8 H 0.115 0.885 9 N -0.343 5.343 10 C -0.076 4.076 11 C 0.272 3.728 12 O -0.434 6.434 13 C -0.038 4.038 14 H 0.115 0.885 15 N -0.335 5.335 16 C -0.135 4.135 17 C -0.006 4.006 18 C -0.560 4.560 19 H 0.070 0.930 20 C -0.143 4.143 21 N -0.531 5.531 22 Si 0.716 3.284 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.158 4.158 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.161 0.839 40 H 0.145 0.855 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.031 0.969 44 H 0.053 0.947 45 H 0.068 0.932 46 H 0.084 0.916 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.414 7.276 -14.650 22.476 hybrid contribution 0.408 -0.048 -0.919 1.007 sum -15.006 7.229 -15.570 22.800 Atomic orbital electron populations 1.21814 0.95088 1.01804 1.01622 1.21099 0.95497 0.99753 0.94555 0.91117 1.21620 0.95499 1.00709 0.97369 1.21490 0.95540 1.00946 0.97470 1.21892 1.01155 0.99744 0.93907 1.21037 0.93404 0.98100 0.84109 0.88536 1.48028 1.50981 1.12630 1.22696 1.21981 1.01783 0.81462 1.02403 1.22764 0.76768 0.87389 0.85862 1.90617 1.58109 1.17604 1.77107 1.21849 1.00189 0.94704 0.87015 0.88473 1.59015 1.13972 1.21853 1.38661 1.21700 0.93412 0.96954 1.01404 1.19017 0.95600 0.93933 0.92009 1.21315 1.13930 1.23658 0.97081 0.92954 1.24995 0.97167 0.97129 0.95048 1.69987 1.40968 1.39049 1.03146 0.86602 0.83024 0.80270 0.78479 1.19859 1.21066 1.21099 1.21909 0.94903 1.01120 0.97880 0.92711 0.92697 0.92679 0.91892 0.91977 0.91660 0.91831 0.91473 0.91508 0.92721 0.91090 0.89217 0.83899 0.85534 0.92878 0.92653 0.96894 0.94664 0.93160 0.91586 0.91819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.19 37.16 0.34 -0.69 16 2 C -0.09 -0.74 2.72 -90.62 -0.25 -0.98 16 3 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 4 C -0.11 -0.86 5.20 -26.73 -0.14 -1.00 16 5 C -0.12 -0.99 5.92 -26.74 -0.16 -1.15 16 6 C -0.13 -1.33 5.18 -26.73 -0.14 -1.47 16 7 C 0.14 1.62 2.52 -67.96 -0.17 1.45 16 8 H 0.10 1.36 6.90 -51.93 -0.36 1.01 16 9 N -0.61 -8.21 2.76 -173.96 -0.48 -8.69 16 10 C 0.07 0.76 8.91 59.85 0.53 1.29 16 11 C 0.48 7.99 6.92 -10.99 -0.08 7.92 16 12 O -0.56 -10.60 15.58 5.56 0.09 -10.51 16 13 C 0.08 1.35 2.31 -68.87 -0.16 1.19 16 14 H 0.10 1.60 7.21 -51.93 -0.37 1.22 16 15 N -0.81 -14.03 8.44 -5.66 -0.05 -14.08 16 16 C -0.10 -1.96 4.45 -26.73 -0.12 -2.08 16 17 C 0.03 0.80 4.86 -27.89 -0.14 0.67 16 18 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 19 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 22 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 26 C -0.12 -1.16 4.48 -26.76 -0.12 -1.28 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.64 6.66 -51.93 -0.35 0.30 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.68 6.43 -51.93 -0.33 0.35 16 38 H 0.09 1.17 4.83 -51.93 -0.25 0.92 16 39 H 0.35 6.13 8.58 -39.29 -0.34 5.79 16 40 H 0.33 5.06 9.06 -39.29 -0.36 4.71 16 41 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 42 H 0.05 1.06 6.43 -51.93 -0.33 0.73 16 43 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.03 0.98 7.75 -51.93 -0.40 0.58 16 45 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 46 H 0.07 0.60 7.67 -51.93 -0.40 0.20 16 47 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 361.59 15.07 5.45 5.45 Total: -1.00 -31.68 361.59 -8.80 -40.48 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -8.53 Total: 6.38 kcal Atomic # 6 Polarization: -8.60 SS G_CDS: -1.00 Total: -9.60 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.21 Total: -48.89 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.68 -8.80 -40.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424102483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.379 kcal (2) G-P(sol) polarization free energy of solvation -31.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds