Wall clock time and date at job start Tue Mar 31 2020 06:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47105 * 2 1 4 4 C 1.53001 * 109.47373 * 239.99803 * 2 1 3 5 5 C 1.52994 * 109.47097 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47242 * 60.00267 * 5 4 2 7 7 C 1.53001 * 109.46857 * 299.99881 * 6 5 4 8 8 H 1.09000 * 109.47166 * 299.99894 * 7 6 5 9 9 N 1.46501 * 109.47103 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99784 * 299.99714 * 9 7 6 11 11 C 1.34781 * 120.00182 * 119.99896 * 9 7 6 12 12 O 1.21279 * 119.99898 * 359.97438 * 11 9 7 13 13 C 1.50696 * 119.99816 * 179.97438 * 11 9 7 14 14 H 1.08999 * 109.47475 * 319.99944 * 13 11 9 15 15 N 1.46898 * 109.47119 * 199.99752 * 13 11 9 16 16 C 1.53000 * 109.47146 * 80.00269 * 13 11 9 17 17 C 1.53001 * 109.47355 * 184.99852 * 16 13 11 18 18 C 1.50694 * 109.47168 * 179.97438 * 17 16 13 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 17 16 20 20 C 1.37885 * 119.99902 * 179.97438 * 18 17 16 21 21 N 1.31516 * 119.99913 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99854 * 179.72538 * 20 18 17 23 23 H 1.48504 * 109.47032 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.46816 * 120.00323 * 22 20 18 25 25 H 1.48495 * 109.46630 * 240.00111 * 22 20 18 26 26 C 1.52998 * 109.46795 * 119.99756 * 2 1 3 27 27 H 1.08996 * 109.47271 * 300.00401 * 1 2 3 28 28 H 1.09006 * 109.46977 * 60.00474 * 1 2 3 29 29 H 1.09000 * 109.47105 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47166 * 300.00159 * 4 2 1 31 31 H 1.09004 * 109.46816 * 59.99713 * 4 2 1 32 32 H 1.09005 * 109.47202 * 179.97438 * 5 4 2 33 33 H 1.09000 * 109.47614 * 299.99730 * 5 4 2 34 34 H 1.09003 * 109.47162 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47146 * 59.99787 * 6 5 4 36 36 H 1.08997 * 109.47119 * 270.00213 * 10 9 7 37 37 H 1.08997 * 109.46974 * 30.00213 * 10 9 7 38 38 H 1.09002 * 109.46764 * 150.00277 * 10 9 7 39 39 H 1.00898 * 111.00196 * 300.00727 * 15 13 11 40 40 H 1.00901 * 110.99633 * 63.95364 * 15 13 11 41 41 H 1.09000 * 109.46966 * 64.99539 * 16 13 11 42 42 H 1.09002 * 109.46807 * 304.99561 * 16 13 11 43 43 H 1.08998 * 109.46837 * 59.99832 * 17 16 13 44 44 H 1.09002 * 109.46926 * 299.99636 * 17 16 13 45 45 H 0.97001 * 119.99646 * 180.02562 * 21 20 18 46 46 H 1.09000 * 109.47095 * 60.00238 * 26 2 1 47 47 H 1.08996 * 109.47083 * 299.99958 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0004 7 6 3.5694 -0.7221 1.2496 8 1 3.9331 0.3054 1.2498 9 7 4.0577 -1.4127 2.4458 10 6 3.7037 -2.8153 2.6777 11 6 4.8325 -0.7577 3.3330 12 8 5.1259 0.4033 3.1409 13 6 5.3343 -1.4679 4.5638 14 1 4.5447 -2.1042 4.9635 15 7 5.7244 -0.4774 5.5760 16 6 6.5460 -2.3276 4.1981 17 6 6.9789 -3.1439 5.4176 18 6 8.1719 -3.9911 5.0573 19 1 8.5804 -3.9517 4.0583 20 6 8.7421 -4.8167 6.0030 21 7 8.2445 -4.8651 7.2195 22 14 10.2163 -5.8726 5.5542 23 1 10.5766 -5.6408 4.1323 24 1 11.3664 -5.5110 6.4211 25 1 9.8779 -7.3048 5.7525 26 6 2.0399 -0.7212 1.2493 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.6767 -1.7489 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.9334 -1.2361 -2.1386 33 1 3.9338 0.3057 -1.2487 34 1 5.1695 -1.4434 0.0009 35 1 3.7158 -2.4709 0.0002 36 1 2.7768 -2.8664 3.2489 37 1 3.5688 -3.3189 1.7205 38 1 4.5022 -3.3039 3.2361 39 1 6.4557 0.1252 5.2293 40 1 4.9272 0.0605 5.8814 41 1 7.3665 -1.6834 3.8822 42 1 6.2802 -3.0028 3.3847 43 1 6.1583 -3.7881 5.7335 44 1 7.2446 -2.4688 6.2311 45 1 8.6459 -5.4457 7.8849 46 1 1.6766 -1.7489 1.2493 47 1 1.6766 -0.2073 2.1392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424102483.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:55 Heat of formation + Delta-G solvation = -91.730575 kcal Electronic energy + Delta-G solvation = -23200.944074 eV Core-core repulsion = 19995.132223 eV Total energy + Delta-G solvation = -3205.811851 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.54700 -39.55834 -36.86491 -36.34947 -34.82626 -33.23618 -31.95754 -31.10307 -28.14967 -27.78975 -27.30532 -25.57367 -23.40532 -22.48152 -21.80210 -20.61558 -20.08690 -18.54422 -18.22008 -17.38346 -16.90395 -16.49406 -16.20908 -16.10516 -15.43602 -15.32033 -15.11493 -14.72630 -14.39525 -14.27431 -14.01310 -13.74807 -13.62994 -13.41462 -13.30702 -13.16120 -12.79932 -12.79306 -12.50880 -12.49814 -12.21517 -12.08732 -11.85936 -11.71837 -11.65570 -11.43415 -11.31868 -11.20373 -11.12412 -10.95530 -10.49207 -9.65673 -9.62178 -8.13662 -6.23865 1.41471 1.42524 1.46759 1.55214 1.96928 2.44759 3.19394 3.43707 3.62277 3.74611 3.76306 3.90275 4.07270 4.08905 4.18165 4.22759 4.29531 4.40838 4.47955 4.49654 4.59510 4.65098 4.71092 4.76064 4.80559 4.87543 4.93061 4.97432 5.03175 5.11555 5.13089 5.22962 5.24534 5.29768 5.37579 5.38541 5.54632 5.57531 5.59642 5.83725 5.98296 6.06179 6.29935 6.31701 6.48369 6.94516 7.05560 7.44259 8.97723 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025669 B = 0.003471 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.568010 B = 8065.818052 C = 8554.700728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.060 0.940 4 C -0.110 4.110 5 C -0.114 4.114 6 C -0.124 4.124 7 C 0.135 3.865 8 H 0.069 0.931 9 N -0.603 5.603 10 C 0.061 3.939 11 C 0.485 3.515 12 O -0.587 6.587 13 C 0.087 3.913 14 H 0.108 0.892 15 N -0.818 5.818 16 C -0.081 4.081 17 C 0.042 3.958 18 C -0.542 4.542 19 H 0.055 0.945 20 C 0.002 3.998 21 N -0.929 5.929 22 Si 0.959 3.041 23 H -0.264 1.264 24 H -0.282 1.282 25 H -0.276 1.276 26 C -0.112 4.112 27 H 0.050 0.950 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.055 0.945 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.073 0.927 39 H 0.344 0.656 40 H 0.345 0.655 41 H 0.038 0.962 42 H 0.069 0.931 43 H -0.004 1.004 44 H 0.004 0.996 45 H 0.262 0.738 46 H 0.079 0.921 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.868 6.323 -17.141 24.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.108 4.108 3 H 0.079 0.921 4 C -0.147 4.147 5 C -0.152 4.152 6 C -0.162 4.162 7 C 0.032 3.968 8 H 0.087 0.913 9 N -0.334 5.334 10 C -0.080 4.080 11 C 0.272 3.728 12 O -0.468 6.468 13 C -0.029 4.029 14 H 0.126 0.874 15 N -0.347 5.347 16 C -0.119 4.119 17 C 0.004 3.996 18 C -0.580 4.580 19 H 0.073 0.927 20 C -0.196 4.196 21 N -0.569 5.569 22 Si 0.784 3.216 23 H -0.188 1.188 24 H -0.208 1.208 25 H -0.202 1.202 26 C -0.150 4.150 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.113 0.887 38 H 0.091 0.909 39 H 0.158 0.842 40 H 0.158 0.842 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.014 0.986 44 H 0.023 0.977 45 H 0.071 0.929 46 H 0.098 0.902 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.487 6.196 -16.621 24.217 hybrid contribution 0.700 0.293 -0.306 0.819 sum -15.786 6.489 -16.927 24.038 Atomic orbital electron populations 1.21783 0.93886 1.02364 1.01962 1.21093 0.96429 0.99088 0.94174 0.92149 1.21598 0.94409 1.01309 0.97371 1.21487 0.96481 1.00356 0.96885 1.21861 0.99936 1.00535 0.93917 1.21160 0.94961 0.96690 0.83976 0.91299 1.48098 1.49636 1.13379 1.22329 1.22150 1.01979 0.80007 1.03911 1.22441 0.77369 0.86977 0.86012 1.90604 1.59617 1.18838 1.77716 1.21633 0.99036 0.94495 0.87737 0.87425 1.59001 1.14652 1.22130 1.38929 1.21422 0.94314 0.96733 0.99469 1.18809 0.94411 0.93289 0.93062 1.21737 1.14860 1.24134 0.97302 0.92712 1.25895 1.00251 0.98518 0.94893 1.70113 1.42589 1.39985 1.04247 0.85487 0.79036 0.78489 0.78543 1.18842 1.20761 1.20169 1.21851 0.92880 1.01999 0.98293 0.93100 0.91720 0.91968 0.90934 0.90678 0.90397 0.92665 0.93455 0.90106 0.90729 0.88680 0.90854 0.84248 0.84154 0.94271 0.91267 0.98557 0.97728 0.92918 0.90213 0.92999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.19 71.98 0.66 -1.01 16 2 C -0.09 -1.29 2.72 -10.79 -0.03 -1.32 16 3 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.11 -1.35 5.20 30.59 0.16 -1.19 16 5 C -0.11 -1.73 5.92 30.59 0.18 -1.55 16 6 C -0.12 -2.39 5.18 30.59 0.16 -2.23 16 7 C 0.14 3.09 2.52 44.97 0.11 3.20 16 8 H 0.07 1.99 6.90 -2.39 -0.02 1.97 16 9 N -0.60 -15.70 2.76 -822.69 -2.27 -17.98 16 10 C 0.06 1.28 8.91 127.77 1.14 2.42 16 11 C 0.48 16.03 6.92 87.66 0.61 16.64 16 12 O -0.59 -22.81 15.58 -3.03 -0.05 -22.86 16 13 C 0.09 3.01 2.31 44.17 0.10 3.11 16 14 H 0.11 3.50 7.21 -2.39 -0.02 3.49 16 15 N -0.82 -29.07 8.44 -171.81 -1.45 -30.52 16 16 C -0.08 -3.35 4.45 30.59 0.14 -3.21 16 17 C 0.04 2.17 4.86 29.85 0.15 2.31 16 18 C -0.54 -30.85 9.11 25.60 0.23 -30.62 16 19 H 0.05 3.02 7.74 -2.91 -0.02 2.99 16 20 C 0.00 0.13 5.46 84.66 0.46 0.59 16 21 N -0.93 -56.60 13.29 21.45 0.28 -56.32 16 22 Si 0.96 44.44 29.54 68.60 2.03 46.47 16 23 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 26 C -0.11 -1.98 4.48 30.58 0.14 -1.84 16 27 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 29 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.77 8.14 -2.38 -0.02 0.76 16 32 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 33 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.08 1.32 6.66 -2.39 -0.02 1.31 16 36 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.09 1.54 6.43 -2.39 -0.02 1.52 16 38 H 0.07 1.81 4.83 -2.39 -0.01 1.80 16 39 H 0.34 12.55 8.58 -89.70 -0.77 11.78 16 40 H 0.35 10.62 9.06 -89.69 -0.81 9.81 16 41 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.07 2.64 6.43 -2.39 -0.02 2.62 16 43 H 0.00 -0.22 8.14 -2.39 -0.02 -0.24 16 44 H 0.00 0.25 7.75 -2.39 -0.02 0.23 16 45 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 46 H 0.08 1.21 7.67 -2.39 -0.02 1.19 16 47 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -68.76 361.59 2.11 -66.65 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.64 Total: 29.24 kcal Atomic # 6 Polarization: -18.89 SS G_CDS: 4.21 Total: -14.69 kcal Atomic # 7 Polarization: -101.37 SS G_CDS: -3.44 Total: -104.81 kcal Atomic # 8 Polarization: -22.81 SS G_CDS: -0.05 Total: -22.86 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -68.76 2.11 -66.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424102483.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.085 kcal (2) G-P(sol) polarization free energy of solvation -68.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds