Wall clock time and date at job start Tue Mar 31 2020 06:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47138 * 2 1 4 4 C 1.52997 * 109.47463 * 239.98975 * 2 1 3 5 5 C 1.52999 * 109.47314 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.46745 * 60.00627 * 5 4 2 7 7 C 1.53003 * 109.47024 * 300.00112 * 6 5 4 8 8 H 1.09003 * 109.47120 * 180.02562 * 7 6 5 9 9 N 1.46502 * 109.46861 * 299.99860 * 7 6 5 10 10 C 1.46500 * 120.00146 * 359.22681 * 9 7 6 11 11 C 1.34778 * 119.99670 * 179.23306 * 9 7 6 12 12 O 1.21280 * 120.00248 * 359.97438 * 11 9 7 13 13 C 1.50699 * 119.99563 * 180.02562 * 11 9 7 14 14 H 1.09000 * 109.47450 * 319.99567 * 13 11 9 15 15 N 1.46902 * 109.47030 * 199.99825 * 13 11 9 16 16 C 1.52999 * 109.47365 * 79.99622 * 13 11 9 17 17 C 1.53004 * 109.47131 * 184.99910 * 16 13 11 18 18 C 1.50699 * 109.47014 * 180.02562 * 17 16 13 19 19 H 1.07998 * 120.00024 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99913 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00064 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99999 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46731 * 90.00154 * 22 20 18 24 24 H 1.48495 * 109.47209 * 210.00142 * 22 20 18 25 25 H 1.48493 * 109.47169 * 330.00465 * 22 20 18 26 26 C 1.52992 * 109.47584 * 60.00052 * 7 6 5 27 27 H 1.08993 * 109.47104 * 300.00743 * 1 2 3 28 28 H 1.09007 * 109.46836 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46552 * 60.01028 * 1 2 3 30 30 H 1.09004 * 109.47673 * 300.00794 * 4 2 1 31 31 H 1.09003 * 109.46799 * 60.00280 * 4 2 1 32 32 H 1.08994 * 109.47333 * 300.00527 * 5 4 2 33 33 H 1.08999 * 109.47262 * 179.97438 * 5 4 2 34 34 H 1.08998 * 109.47312 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.47207 * 59.99692 * 6 5 4 36 36 H 1.09000 * 109.46723 * 95.92450 * 10 9 7 37 37 H 1.08998 * 109.47198 * 215.92808 * 10 9 7 38 38 H 1.09002 * 109.46850 * 335.93033 * 10 9 7 39 39 H 1.00901 * 111.00405 * 176.04415 * 15 13 11 40 40 H 1.00910 * 110.99557 * 299.99611 * 15 13 11 41 41 H 1.09001 * 109.47356 * 304.99983 * 16 13 11 42 42 H 1.09003 * 109.46924 * 65.00059 * 16 13 11 43 43 H 1.09004 * 109.47165 * 299.99741 * 17 16 13 44 44 H 1.09000 * 109.47113 * 59.99718 * 17 16 13 45 45 H 0.96997 * 120.00207 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.47777 * 180.02562 * 26 7 6 47 47 H 1.09004 * 109.47281 * 59.99505 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5701 -0.7209 -1.2493 6 6 4.0805 -1.4417 0.0000 7 6 3.5704 -0.7203 1.2491 8 1 3.9344 -1.2335 2.1392 9 7 4.0583 0.6611 1.2487 10 6 4.9142 1.1354 0.1584 11 6 3.7198 1.4956 2.2515 12 8 3.0110 1.1031 3.1539 13 6 4.2212 2.9167 2.2508 14 1 5.2570 2.9364 1.9119 15 7 4.1406 3.4651 3.6112 16 6 3.3604 3.7608 1.3088 17 6 3.9439 5.1719 1.2117 18 6 3.0956 6.0035 0.2844 19 1 2.2270 5.5691 -0.1881 20 6 3.4284 7.3188 0.0391 21 7 2.6879 8.0447 -0.7697 22 14 4.9305 8.0702 0.8569 23 1 6.1192 7.8673 -0.0096 24 1 4.7082 9.5244 1.0597 25 1 5.1580 7.4163 2.1705 26 6 2.0405 -0.7208 1.2494 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 -0.8901 30 1 1.6768 -1.7491 -1.2491 31 1 1.6768 -0.2077 -2.1391 32 1 3.9331 0.3069 -1.2497 33 1 3.9335 -1.2352 -2.1390 34 1 5.1705 -1.4409 0.0001 35 1 3.7175 -2.4695 0.0003 36 1 4.3033 1.6410 -0.5893 37 1 5.6543 1.8310 0.5538 38 1 5.4217 0.2868 -0.3004 39 1 4.5309 4.3947 3.6501 40 1 3.1895 3.4577 3.9483 41 1 3.3488 3.3035 0.3194 42 1 2.3430 3.8142 1.6964 43 1 3.9554 5.6292 2.2011 44 1 4.9613 5.1185 0.8242 45 1 2.9218 8.9701 -0.9420 46 1 1.6770 -0.2065 2.1391 47 1 1.6774 -1.7486 1.2496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424102485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:59 Heat of formation + Delta-G solvation = -45.613613 kcal Electronic energy + Delta-G solvation = -24166.329658 eV Core-core repulsion = 20962.517588 eV Total energy + Delta-G solvation = -3203.812070 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.73741 -38.29702 -35.60087 -34.91526 -32.80824 -32.22967 -30.74490 -30.30441 -27.20660 -26.67604 -25.91761 -23.95618 -22.42786 -21.21004 -20.52225 -19.75383 -18.62609 -17.26457 -16.70856 -16.12330 -15.59069 -15.23756 -14.63176 -14.38658 -14.28797 -14.22475 -13.88296 -13.61598 -13.36891 -13.06513 -12.71604 -12.57028 -12.46711 -12.30080 -12.17414 -11.97952 -11.72743 -11.69385 -11.46673 -11.30363 -10.97034 -10.77920 -10.43167 -10.35859 -10.20957 -10.04533 -9.99546 -9.88614 -9.31287 -9.17668 -8.62385 -8.47751 -8.26674 -6.11926 -4.11287 2.93283 3.07723 3.24291 3.33041 3.34346 4.37355 4.47809 4.64739 4.68235 4.87266 5.03645 5.04946 5.06202 5.13450 5.21238 5.33178 5.34346 5.39206 5.44553 5.48411 5.60146 5.63144 5.65385 5.69049 5.75430 5.83876 5.88599 5.96102 6.00552 6.12958 6.17321 6.17844 6.29198 6.33465 6.39002 6.47654 6.66992 6.74431 7.10084 7.21952 7.33858 7.59890 7.67195 7.80331 8.44202 8.46630 8.92213 9.49528 11.01324 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019139 B = 0.004818 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.611475 B = 5810.651266 C = 6251.645781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.090 4.090 3 H 0.072 0.928 4 C -0.111 4.111 5 C -0.149 4.149 6 C -0.124 4.124 7 C 0.153 3.847 8 H 0.070 0.930 9 N -0.610 5.610 10 C 0.065 3.935 11 C 0.528 3.472 12 O -0.534 6.534 13 C 0.070 3.930 14 H 0.096 0.904 15 N -0.831 5.831 16 C -0.128 4.128 17 C -0.010 4.010 18 C -0.522 4.522 19 H 0.071 0.929 20 C 0.068 3.932 21 N -0.901 5.901 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.265 1.265 26 C -0.131 4.131 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.090 0.910 33 H 0.060 0.940 34 H 0.068 0.932 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.081 0.919 39 H 0.349 0.651 40 H 0.347 0.653 41 H 0.062 0.938 42 H 0.059 0.941 43 H 0.015 0.985 44 H 0.013 0.987 45 H 0.264 0.736 46 H 0.086 0.914 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.337 -18.832 0.112 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.108 4.108 3 H 0.091 0.909 4 C -0.148 4.148 5 C -0.186 4.186 6 C -0.162 4.162 7 C 0.050 3.950 8 H 0.088 0.912 9 N -0.345 5.345 10 C -0.077 4.077 11 C 0.316 3.684 12 O -0.410 6.410 13 C -0.045 4.045 14 H 0.114 0.886 15 N -0.363 5.363 16 C -0.167 4.167 17 C -0.047 4.047 18 C -0.560 4.560 19 H 0.089 0.911 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.707 3.293 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.190 1.190 26 C -0.169 4.169 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.108 0.892 33 H 0.079 0.921 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.099 0.901 39 H 0.164 0.836 40 H 0.161 0.839 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.033 0.967 44 H 0.031 0.969 45 H 0.074 0.926 46 H 0.104 0.896 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.413 -19.482 0.734 19.793 hybrid contribution 0.155 1.284 -0.296 1.327 sum 3.568 -18.198 0.439 18.550 Atomic orbital electron populations 1.21799 0.95458 1.01190 1.01827 1.21058 0.95261 1.00170 0.94317 0.90945 1.21560 0.95254 1.00217 0.97811 1.22210 0.96415 1.03057 0.96909 1.21818 1.00508 0.99529 0.94330 1.20941 0.94460 0.81749 0.97811 0.91183 1.47845 1.51091 1.11526 1.24035 1.22249 0.94544 1.00472 0.90477 1.20678 0.79840 0.87296 0.80568 1.90592 1.37315 1.77248 1.35875 1.21579 1.00984 0.90837 0.91105 0.88637 1.58757 1.27335 1.29371 1.20838 1.22175 0.98854 0.97322 0.98378 1.19569 0.96341 0.91692 0.97128 1.21058 1.12369 0.95769 1.26834 0.91102 1.25033 0.96563 0.97082 0.94698 1.69907 1.39001 1.08670 1.36368 0.86777 0.83429 0.78464 0.80585 1.20262 1.21347 1.18991 1.22007 0.94550 1.00825 0.99485 0.92675 0.93143 0.92773 0.92490 0.92102 0.89169 0.92109 0.91357 0.90709 0.91436 0.91216 0.90059 0.83618 0.83935 0.91926 0.92202 0.96668 0.96884 0.92647 0.89598 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.20 37.16 0.34 -1.35 16 2 C -0.09 -1.08 2.56 -90.61 -0.23 -1.31 16 3 H 0.07 1.05 7.60 -51.93 -0.39 0.66 16 4 C -0.11 -1.12 5.20 -26.73 -0.14 -1.26 16 5 C -0.15 -1.35 5.26 -26.73 -0.14 -1.49 16 6 C -0.12 -1.09 4.91 -26.73 -0.13 -1.22 16 7 C 0.15 1.78 2.94 -67.93 -0.20 1.58 16 8 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 9 N -0.61 -7.89 2.25 -173.93 -0.39 -8.28 16 10 C 0.07 0.70 7.47 59.85 0.45 1.15 16 11 C 0.53 8.54 6.63 -10.99 -0.07 8.46 16 12 O -0.53 -10.07 14.30 5.56 0.08 -9.99 16 13 C 0.07 1.14 2.50 -68.86 -0.17 0.97 16 14 H 0.10 1.44 6.37 -51.93 -0.33 1.11 16 15 N -0.83 -13.72 8.94 -5.65 -0.05 -13.77 16 16 C -0.13 -2.40 4.71 -26.73 -0.13 -2.52 16 17 C -0.01 -0.22 3.81 -27.88 -0.11 -0.33 16 18 C -0.52 -14.37 9.66 -34.44 -0.33 -14.70 16 19 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 20 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 21 N -0.90 -27.25 13.96 55.43 0.77 -26.48 16 22 Si 0.88 21.01 27.47 -169.99 -4.67 16.34 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.00 6.54 56.52 0.37 -5.63 16 26 C -0.13 -1.60 4.51 -26.73 -0.12 -1.72 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.51 8.14 -51.92 -0.42 0.09 16 29 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.88 3.66 -51.93 -0.19 0.69 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.53 6.89 -51.93 -0.36 0.18 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.76 5.89 -51.93 -0.31 0.46 16 37 H 0.07 0.74 6.20 -51.93 -0.32 0.42 16 38 H 0.08 0.68 4.95 -51.93 -0.26 0.42 16 39 H 0.35 5.59 7.55 -39.29 -0.30 5.30 16 40 H 0.35 5.86 8.58 -39.29 -0.34 5.52 16 41 H 0.06 1.15 6.74 -51.93 -0.35 0.80 16 42 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.02 0.34 5.93 -51.93 -0.31 0.03 16 44 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.09 1.31 6.11 -51.93 -0.32 0.99 16 47 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 344.26 15.07 5.19 5.19 Total: -1.00 -31.09 344.26 -8.13 -39.21 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -7.97 Total: 9.69 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -1.08 Total: -11.92 kcal Atomic # 7 Polarization: -48.85 SS G_CDS: 0.33 Total: -48.52 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.08 Total: -9.99 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.67 Total: 16.34 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.09 -8.13 -39.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424102485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.400 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds