Wall clock time and date at job start Tue Mar 31 2020 06:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08994 * 109.47138 * 2 1 4 4 C 1.52997 * 109.47463 * 239.98975 * 2 1 3 5 5 C 1.52999 * 109.47314 * 179.97438 * 4 2 1 6 6 C 1.52998 * 109.46745 * 60.00627 * 5 4 2 7 7 C 1.53003 * 109.47024 * 300.00112 * 6 5 4 8 8 H 1.09003 * 109.47120 * 180.02562 * 7 6 5 9 9 N 1.46502 * 109.46861 * 299.99860 * 7 6 5 10 10 C 1.46500 * 120.00146 * 359.22681 * 9 7 6 11 11 C 1.34778 * 119.99670 * 179.23306 * 9 7 6 12 12 O 1.21280 * 120.00248 * 359.97438 * 11 9 7 13 13 C 1.50699 * 119.99563 * 180.02562 * 11 9 7 14 14 H 1.09000 * 109.47450 * 319.99567 * 13 11 9 15 15 N 1.46902 * 109.47030 * 199.99825 * 13 11 9 16 16 C 1.52999 * 109.47365 * 79.99622 * 13 11 9 17 17 C 1.53004 * 109.47131 * 184.99910 * 16 13 11 18 18 C 1.50699 * 109.47014 * 180.02562 * 17 16 13 19 19 H 1.07998 * 120.00024 * 0.02562 * 18 17 16 20 20 C 1.37879 * 119.99913 * 180.02562 * 18 17 16 21 21 N 1.31509 * 120.00064 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99999 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.46731 * 90.00154 * 22 20 18 24 24 H 1.48495 * 109.47209 * 210.00142 * 22 20 18 25 25 H 1.48493 * 109.47169 * 330.00465 * 22 20 18 26 26 C 1.52992 * 109.47584 * 60.00052 * 7 6 5 27 27 H 1.08993 * 109.47104 * 300.00743 * 1 2 3 28 28 H 1.09007 * 109.46836 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46552 * 60.01028 * 1 2 3 30 30 H 1.09004 * 109.47673 * 300.00794 * 4 2 1 31 31 H 1.09003 * 109.46799 * 60.00280 * 4 2 1 32 32 H 1.08994 * 109.47333 * 300.00527 * 5 4 2 33 33 H 1.08999 * 109.47262 * 179.97438 * 5 4 2 34 34 H 1.08998 * 109.47312 * 180.02562 * 6 5 4 35 35 H 1.09004 * 109.47207 * 59.99692 * 6 5 4 36 36 H 1.09000 * 109.46723 * 95.92450 * 10 9 7 37 37 H 1.08998 * 109.47198 * 215.92808 * 10 9 7 38 38 H 1.09002 * 109.46850 * 335.93033 * 10 9 7 39 39 H 1.00901 * 111.00405 * 176.04415 * 15 13 11 40 40 H 1.00910 * 110.99557 * 299.99611 * 15 13 11 41 41 H 1.09001 * 109.47356 * 304.99983 * 16 13 11 42 42 H 1.09003 * 109.46924 * 65.00059 * 16 13 11 43 43 H 1.09004 * 109.47165 * 299.99741 * 17 16 13 44 44 H 1.09000 * 109.47113 * 59.99718 * 17 16 13 45 45 H 0.96997 * 120.00207 * 179.97438 * 21 20 18 46 46 H 1.08998 * 109.47777 * 180.02562 * 26 7 6 47 47 H 1.09004 * 109.47281 * 59.99505 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 3.5701 -0.7209 -1.2493 6 6 4.0805 -1.4417 0.0000 7 6 3.5704 -0.7203 1.2491 8 1 3.9344 -1.2335 2.1392 9 7 4.0583 0.6611 1.2487 10 6 4.9142 1.1354 0.1584 11 6 3.7198 1.4956 2.2515 12 8 3.0110 1.1031 3.1539 13 6 4.2212 2.9167 2.2508 14 1 5.2570 2.9364 1.9119 15 7 4.1406 3.4651 3.6112 16 6 3.3604 3.7608 1.3088 17 6 3.9439 5.1719 1.2117 18 6 3.0956 6.0035 0.2844 19 1 2.2270 5.5691 -0.1881 20 6 3.4284 7.3188 0.0391 21 7 2.6879 8.0447 -0.7697 22 14 4.9305 8.0702 0.8569 23 1 6.1192 7.8673 -0.0096 24 1 4.7082 9.5244 1.0597 25 1 5.1580 7.4163 2.1705 26 6 2.0405 -0.7208 1.2494 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 -0.8901 30 1 1.6768 -1.7491 -1.2491 31 1 1.6768 -0.2077 -2.1391 32 1 3.9331 0.3069 -1.2497 33 1 3.9335 -1.2352 -2.1390 34 1 5.1705 -1.4409 0.0001 35 1 3.7175 -2.4695 0.0003 36 1 4.3033 1.6410 -0.5893 37 1 5.6543 1.8310 0.5538 38 1 5.4217 0.2868 -0.3004 39 1 4.5309 4.3947 3.6501 40 1 3.1895 3.4577 3.9483 41 1 3.3488 3.3035 0.3194 42 1 2.3430 3.8142 1.6964 43 1 3.9554 5.6292 2.2011 44 1 4.9613 5.1185 0.8242 45 1 2.9218 8.9701 -0.9420 46 1 1.6770 -0.2065 2.1391 47 1 1.6774 -1.7486 1.2496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424102485.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:58 Heat of formation + Delta-G solvation = -65.927942 kcal Electronic energy + Delta-G solvation = -24167.210553 eV Core-core repulsion = 20962.517588 eV Total energy + Delta-G solvation = -3204.692965 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.80379 -39.41289 -37.11170 -35.96253 -34.81369 -33.11153 -32.09359 -31.66638 -28.48887 -27.90211 -26.86862 -25.55815 -23.40641 -22.36483 -21.92203 -20.84362 -19.82615 -18.95459 -18.27489 -17.15843 -16.65889 -16.35668 -16.20638 -15.69162 -15.56137 -15.45221 -15.21140 -14.69750 -14.66033 -14.40910 -14.29658 -13.84255 -13.55361 -13.30673 -13.20427 -13.10868 -12.94650 -12.86057 -12.58682 -12.47960 -12.38698 -12.07328 -11.86454 -11.73952 -11.64290 -11.41093 -11.26940 -11.08541 -10.97178 -10.77317 -10.41788 -9.67667 -9.50895 -8.29914 -6.35433 1.37503 1.40143 1.51043 1.65864 2.02486 2.36052 3.05683 3.49186 3.71093 3.79050 3.81269 3.86906 4.02589 4.14649 4.16220 4.22895 4.33131 4.45967 4.51339 4.53059 4.57795 4.64070 4.69906 4.73641 4.76062 4.86220 4.88112 4.92320 4.95293 5.03127 5.11189 5.18659 5.30674 5.32952 5.35672 5.37773 5.42593 5.45904 5.56378 5.62057 5.77940 6.04179 6.24939 6.43123 6.47791 6.72595 7.24683 7.29398 8.86940 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019139 B = 0.004818 C = 0.004478 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.611475 B = 5810.651266 C = 6251.645781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.088 4.088 3 H 0.040 0.960 4 C -0.108 4.108 5 C -0.149 4.149 6 C -0.115 4.115 7 C 0.148 3.852 8 H 0.065 0.935 9 N -0.601 5.601 10 C 0.058 3.942 11 C 0.521 3.479 12 O -0.568 6.568 13 C 0.078 3.922 14 H 0.117 0.883 15 N -0.830 5.830 16 C -0.113 4.113 17 C -0.004 4.004 18 C -0.533 4.533 19 H 0.024 0.976 20 C 0.005 3.995 21 N -0.952 5.952 22 Si 0.952 3.048 23 H -0.263 1.263 24 H -0.289 1.289 25 H -0.240 1.240 26 C -0.126 4.126 27 H 0.035 0.965 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.056 0.944 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.353 0.647 40 H 0.343 0.657 41 H 0.062 0.938 42 H 0.035 0.965 43 H 0.023 0.977 44 H 0.031 0.969 45 H 0.266 0.734 46 H 0.049 0.951 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.047 -20.578 0.037 21.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.107 4.107 3 H 0.058 0.942 4 C -0.145 4.145 5 C -0.186 4.186 6 C -0.152 4.152 7 C 0.045 3.955 8 H 0.083 0.917 9 N -0.334 5.334 10 C -0.084 4.084 11 C 0.310 3.690 12 O -0.447 6.447 13 C -0.037 4.037 14 H 0.134 0.866 15 N -0.362 5.362 16 C -0.153 4.153 17 C -0.042 4.042 18 C -0.571 4.571 19 H 0.043 0.957 20 C -0.192 4.192 21 N -0.593 5.593 22 Si 0.775 3.225 23 H -0.187 1.187 24 H -0.216 1.216 25 H -0.163 1.163 26 C -0.164 4.164 27 H 0.054 0.946 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.130 0.870 39 H 0.168 0.832 40 H 0.156 0.844 41 H 0.081 0.919 42 H 0.053 0.947 43 H 0.041 0.959 44 H 0.049 0.951 45 H 0.075 0.925 46 H 0.068 0.932 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.142 -21.262 0.640 22.140 hybrid contribution -0.817 1.790 -0.335 1.996 sum 5.325 -19.472 0.305 20.189 Atomic orbital electron populations 1.21799 0.95512 1.02084 1.00836 1.21012 0.95319 0.98681 0.95654 0.94179 1.21535 0.96301 1.00550 0.96109 1.22216 0.95383 1.02970 0.97993 1.21803 1.01531 0.99768 0.92129 1.21116 0.93868 0.81089 0.99414 0.91738 1.47888 1.50386 1.11772 1.23368 1.22475 0.94269 1.01937 0.89680 1.20671 0.79706 0.87588 0.81073 1.90583 1.38778 1.77842 1.37497 1.21511 1.01330 0.90616 0.90239 0.86551 1.58778 1.27089 1.29612 1.20695 1.21953 0.97907 0.96271 0.99143 1.19486 0.96179 0.92478 0.96008 1.21397 1.11682 0.96662 1.27348 0.95711 1.26050 1.00248 0.97595 0.95327 1.70077 1.41518 1.09215 1.38487 0.85629 0.79026 0.77211 0.80618 1.18737 1.21565 1.16328 1.21926 0.95371 1.01285 0.97843 0.94579 0.91246 0.92871 0.90948 0.92491 0.90021 0.90006 0.89538 0.88926 0.92119 0.90707 0.86969 0.83199 0.84383 0.91923 0.94655 0.95892 0.95091 0.92524 0.93189 0.89917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.44 9.20 71.98 0.66 -2.78 16 2 C -0.09 -2.12 2.56 -10.79 -0.03 -2.15 16 3 H 0.04 1.21 7.60 -2.39 -0.02 1.20 16 4 C -0.11 -1.96 5.20 30.59 0.16 -1.80 16 5 C -0.15 -2.24 5.26 30.59 0.16 -2.08 16 6 C -0.11 -1.60 4.91 30.59 0.15 -1.45 16 7 C 0.15 3.18 2.94 44.99 0.13 3.32 16 8 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 9 N -0.60 -14.84 2.25 -822.59 -1.85 -16.69 16 10 C 0.06 1.11 7.47 127.77 0.95 2.07 16 11 C 0.52 16.75 6.63 87.66 0.58 17.33 16 12 O -0.57 -21.83 14.30 -3.03 -0.04 -21.88 16 13 C 0.08 2.47 2.50 44.17 0.11 2.58 16 14 H 0.12 3.21 6.37 -2.39 -0.02 3.20 16 15 N -0.83 -26.59 8.94 -171.80 -1.54 -28.13 16 16 C -0.11 -4.27 4.71 30.60 0.14 -4.13 16 17 C 0.00 -0.18 3.81 29.85 0.11 -0.06 16 18 C -0.53 -30.00 9.66 25.60 0.25 -29.76 16 19 H 0.02 1.56 7.99 -2.91 -0.02 1.54 16 20 C 0.00 0.26 5.47 84.66 0.46 0.72 16 21 N -0.95 -59.21 13.96 21.45 0.30 -58.91 16 22 Si 0.95 42.51 27.47 68.60 1.88 44.39 16 23 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 24 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 25 H -0.24 -9.68 6.54 99.48 0.65 -9.02 16 26 C -0.13 -3.05 4.51 30.59 0.14 -2.91 16 27 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.08 1.39 3.66 -2.39 -0.01 1.38 16 33 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 0.95 6.89 -2.39 -0.02 0.93 16 35 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.29 5.89 -2.39 -0.01 1.28 16 37 H 0.07 1.38 6.20 -2.39 -0.01 1.36 16 38 H 0.11 1.46 4.95 -2.39 -0.01 1.45 16 39 H 0.35 10.65 7.55 -89.69 -0.68 9.98 16 40 H 0.34 11.61 8.58 -89.69 -0.77 10.84 16 41 H 0.06 2.34 6.74 -2.39 -0.02 2.33 16 42 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 43 H 0.02 0.97 5.93 -2.38 -0.01 0.96 16 44 H 0.03 1.26 7.57 -2.39 -0.02 1.24 16 45 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 46 H 0.05 1.58 6.11 -2.39 -0.01 1.57 16 47 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -70.10 344.26 2.21 -67.89 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: -0.53 Total: 34.43 kcal Atomic # 6 Polarization: -25.09 SS G_CDS: 3.99 Total: -21.10 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -3.09 Total: -103.73 kcal Atomic # 8 Polarization: -21.83 SS G_CDS: -0.04 Total: -21.88 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 1.88 Total: 44.39 kcal Total: -70.10 2.21 -67.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424102485.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.960 kcal (2) G-P(sol) polarization free energy of solvation -70.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds