Wall clock time and date at job start Tue Mar 31 2020 06:14:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47145 * 2 1 4 4 C 1.52996 * 109.47336 * 239.99824 * 2 1 3 5 5 C 1.53000 * 109.47159 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47346 * 60.00272 * 5 4 2 7 7 C 1.53009 * 109.46779 * 300.00175 * 6 5 4 8 8 H 1.08999 * 109.46699 * 179.97438 * 7 6 5 9 9 N 1.46501 * 109.46842 * 299.99387 * 7 6 5 10 10 C 1.46497 * 120.00286 * 359.18122 * 9 7 6 11 11 C 1.34774 * 119.99741 * 179.17562 * 9 7 6 12 12 O 1.21284 * 119.99930 * 0.02562 * 11 9 7 13 13 C 1.50701 * 119.99993 * 180.02562 * 11 9 7 14 14 H 1.08999 * 109.46899 * 39.99876 * 13 11 9 15 15 N 1.46902 * 109.46956 * 160.00039 * 13 11 9 16 16 C 1.53003 * 109.46996 * 279.99900 * 13 11 9 17 17 C 1.53001 * 109.46881 * 174.99799 * 16 13 11 18 18 C 1.50701 * 109.46690 * 180.02562 * 17 16 13 19 19 H 1.08003 * 120.00237 * 0.02562 * 18 17 16 20 20 C 1.37880 * 119.99824 * 180.02562 * 18 17 16 21 21 N 1.31517 * 120.00141 * 180.02562 * 20 18 17 22 22 Si 1.86800 * 120.00067 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47133 * 89.99869 * 22 20 18 24 24 H 1.48494 * 109.47106 * 210.00044 * 22 20 18 25 25 H 1.48502 * 109.47094 * 330.00337 * 22 20 18 26 26 C 1.52996 * 109.47201 * 119.99748 * 2 1 3 27 27 H 1.09001 * 109.46622 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47503 * 300.00289 * 1 2 3 29 29 H 1.09004 * 109.47201 * 60.00463 * 1 2 3 30 30 H 1.09003 * 109.47336 * 60.00495 * 4 2 1 31 31 H 1.08991 * 109.47448 * 299.99720 * 4 2 1 32 32 H 1.09001 * 109.47499 * 300.00284 * 5 4 2 33 33 H 1.09006 * 109.47135 * 180.02562 * 5 4 2 34 34 H 1.08999 * 109.47516 * 180.02562 * 6 5 4 35 35 H 1.09001 * 109.46812 * 59.99591 * 6 5 4 36 36 H 1.08995 * 109.47657 * 95.90680 * 10 9 7 37 37 H 1.08996 * 109.47129 * 215.91731 * 10 9 7 38 38 H 1.09000 * 109.46936 * 335.90989 * 10 9 7 39 39 H 1.00898 * 111.00196 * 296.04419 * 15 13 11 40 40 H 1.00901 * 110.99908 * 60.00575 * 15 13 11 41 41 H 1.09001 * 109.47171 * 294.99898 * 16 13 11 42 42 H 1.09003 * 109.46863 * 54.99970 * 16 13 11 43 43 H 1.09001 * 109.47299 * 300.00021 * 17 16 13 44 44 H 1.08999 * 109.46751 * 60.00373 * 17 16 13 45 45 H 0.96995 * 119.99657 * 180.02562 * 21 20 18 46 46 H 1.09001 * 109.47563 * 60.00352 * 26 2 1 47 47 H 1.09000 * 109.47518 * 300.00006 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2494 6 6 4.0806 -1.4416 -0.0002 7 6 3.5704 -0.7203 1.2490 8 1 3.9338 -1.2341 2.1390 9 7 4.0583 0.6611 1.2487 10 6 4.9150 1.1352 0.1590 11 6 3.7189 1.4958 2.2510 12 8 3.0100 1.1032 3.1533 13 6 4.2203 2.9170 2.2504 14 1 4.1863 3.3138 1.2358 15 7 3.3711 3.7362 3.1255 16 6 5.6617 2.9495 2.7627 17 6 6.2127 4.3719 2.6452 18 6 7.6326 4.4038 3.1492 19 1 8.0958 3.4997 3.5161 20 6 8.3404 5.5870 3.1418 21 7 9.5797 5.6147 3.5811 22 14 7.5395 7.1505 2.5064 23 1 6.8626 7.8507 3.6274 24 1 8.5784 8.0373 1.9240 25 1 6.5407 6.8062 1.4628 26 6 2.0400 -0.7212 1.2492 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 1.6768 -0.2074 -2.1392 31 1 1.6768 -1.7489 -1.2492 32 1 3.9330 0.3071 -1.2496 33 1 3.9334 -1.2342 -2.1397 34 1 5.1706 -1.4408 -0.0002 35 1 3.7176 -2.4693 0.0000 36 1 4.3048 1.6404 -0.5895 37 1 5.6547 1.8310 0.5548 38 1 5.4232 0.2866 -0.2991 39 1 2.4271 3.7834 2.7722 40 1 3.3859 3.3883 4.0725 41 1 5.6834 2.6364 3.8065 42 1 6.2742 2.2722 2.1674 43 1 6.1910 4.6850 1.6013 44 1 5.6002 5.0491 3.2405 45 1 10.0774 6.4472 3.5763 46 1 1.6767 -1.7489 1.2493 47 1 1.6767 -0.2074 2.1392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424102487.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:02 Heat of formation + Delta-G solvation = -45.665274 kcal Electronic energy + Delta-G solvation = -23886.804543 eV Core-core repulsion = 20682.990233 eV Total energy + Delta-G solvation = -3203.814310 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.85397 -38.47492 -35.41016 -35.01486 -32.75756 -32.37050 -30.82431 -30.46736 -27.28561 -26.67057 -26.03456 -23.87053 -22.45073 -21.30282 -20.31734 -19.97875 -18.71966 -17.05101 -16.70084 -16.16457 -15.83665 -15.41885 -15.21400 -14.70909 -14.26188 -14.08971 -13.95899 -13.57785 -13.36692 -13.09624 -12.64132 -12.58029 -12.43579 -12.30811 -12.13683 -12.12060 -11.86856 -11.66244 -11.62589 -10.99139 -10.91466 -10.85217 -10.58108 -10.43368 -10.33125 -10.02813 -9.86568 -9.69161 -9.53489 -9.10624 -8.55988 -8.49034 -8.32467 -5.98968 -3.96496 2.76308 3.05167 3.37924 3.44421 3.49741 4.39157 4.51020 4.51759 4.54567 4.75586 4.87178 4.91430 4.98970 5.09214 5.18625 5.26219 5.30533 5.32747 5.35943 5.41079 5.45052 5.50073 5.56428 5.64781 5.64920 5.71048 5.73410 5.81676 5.86590 6.00067 6.02893 6.08580 6.19492 6.27336 6.32702 6.49864 6.65139 6.89288 7.27682 7.39506 7.48353 7.58391 7.69403 7.87184 8.29695 8.58696 9.05848 9.64175 11.14548 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025648 B = 0.004058 C = 0.003903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.461203 B = 6898.846212 C = 7171.452586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.087 4.087 3 H 0.067 0.933 4 C -0.111 4.111 5 C -0.149 4.149 6 C -0.126 4.126 7 C 0.149 3.851 8 H 0.071 0.929 9 N -0.605 5.605 10 C 0.058 3.942 11 C 0.486 3.514 12 O -0.550 6.550 13 C 0.075 3.925 14 H 0.096 0.904 15 N -0.812 5.812 16 C -0.089 4.089 17 C -0.004 4.004 18 C -0.521 4.521 19 H 0.069 0.931 20 C 0.066 3.934 21 N -0.907 5.907 22 Si 0.882 3.118 23 H -0.277 1.277 24 H -0.291 1.291 25 H -0.264 1.264 26 C -0.130 4.130 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.334 0.666 40 H 0.349 0.651 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.012 0.988 44 H 0.029 0.971 45 H 0.262 0.738 46 H 0.065 0.935 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.894 -13.742 -11.426 23.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.106 4.106 3 H 0.086 0.914 4 C -0.149 4.149 5 C -0.185 4.185 6 C -0.163 4.163 7 C 0.046 3.954 8 H 0.089 0.911 9 N -0.339 5.339 10 C -0.084 4.084 11 C 0.273 3.727 12 O -0.428 6.428 13 C -0.041 4.041 14 H 0.114 0.886 15 N -0.340 5.340 16 C -0.127 4.127 17 C -0.041 4.041 18 C -0.559 4.559 19 H 0.087 0.913 20 C -0.135 4.135 21 N -0.546 5.546 22 Si 0.710 3.290 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.189 1.189 26 C -0.168 4.168 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.107 0.893 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.146 0.854 40 H 0.163 0.837 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.030 0.970 44 H 0.047 0.953 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -15.616 -13.228 -11.099 23.281 hybrid contribution -0.791 -0.164 -0.237 0.842 sum -16.407 -13.392 -11.337 24.022 Atomic orbital electron populations 1.21810 0.95509 1.01474 1.01502 1.21037 0.95085 0.99828 0.94649 0.91450 1.21566 0.95480 1.00351 0.97467 1.22208 0.96115 1.03074 0.97145 1.21820 1.00876 0.99490 0.94132 1.20980 0.94214 0.82200 0.98024 0.91092 1.47980 1.50400 1.11475 1.24088 1.22343 0.94678 1.01212 0.90169 1.22501 0.79756 0.89699 0.80731 1.90604 1.38391 1.77764 1.36019 1.21859 0.96870 0.86042 0.99335 0.88635 1.59040 1.14432 1.54160 1.06321 1.21506 0.89316 1.01307 1.00544 1.19480 0.96240 0.91661 0.96726 1.21183 0.96212 0.96601 1.41888 0.91330 1.25014 0.94666 0.98977 0.94831 1.69926 1.09910 1.27138 1.47616 0.86738 0.79101 0.83316 0.79861 1.20287 1.21725 1.18902 1.22005 0.94749 1.00898 0.99166 0.92932 0.92772 0.92942 0.92280 0.92352 0.89264 0.92015 0.91052 0.90698 0.92217 0.89832 0.89841 0.85447 0.83687 0.92282 0.92019 0.96968 0.95258 0.92852 0.91680 0.89710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 9.19 37.16 0.34 -0.96 16 2 C -0.09 -0.85 2.56 -90.63 -0.23 -1.09 16 3 H 0.07 0.77 7.60 -51.93 -0.39 0.37 16 4 C -0.11 -0.91 5.20 -26.73 -0.14 -1.05 16 5 C -0.15 -1.17 5.26 -26.73 -0.14 -1.31 16 6 C -0.13 -1.07 4.91 -26.73 -0.13 -1.20 16 7 C 0.15 1.67 2.95 -67.90 -0.20 1.47 16 8 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 9 N -0.61 -7.52 2.25 -173.91 -0.39 -7.91 16 10 C 0.06 0.61 7.61 59.85 0.46 1.07 16 11 C 0.49 7.42 6.62 -10.99 -0.07 7.34 16 12 O -0.55 -9.68 14.30 5.55 0.08 -9.60 16 13 C 0.07 1.19 2.33 -68.86 -0.16 1.03 16 14 H 0.10 1.42 7.30 -51.93 -0.38 1.04 16 15 N -0.81 -12.91 8.44 -5.65 -0.05 -12.96 16 16 C -0.09 -1.72 4.49 -26.73 -0.12 -1.84 16 17 C 0.00 -0.09 3.93 -27.88 -0.11 -0.19 16 18 C -0.52 -14.81 9.66 -34.44 -0.33 -15.14 16 19 H 0.07 2.10 7.99 -52.48 -0.42 1.68 16 20 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 21 N -0.91 -28.13 13.96 55.43 0.77 -27.35 16 22 Si 0.88 21.99 27.47 -169.99 -4.67 17.33 16 23 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 25 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 26 C -0.13 -1.43 4.51 -26.71 -0.12 -1.55 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.09 0.73 3.66 -51.93 -0.19 0.54 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.59 6.89 -51.93 -0.36 0.23 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.55 6.70 -51.93 -0.35 0.20 16 37 H 0.08 1.01 5.03 -51.93 -0.26 0.75 16 38 H 0.08 0.73 4.95 -51.93 -0.26 0.47 16 39 H 0.33 4.61 9.06 -39.29 -0.36 4.25 16 40 H 0.35 5.70 8.58 -39.29 -0.34 5.37 16 41 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 42 H 0.06 1.14 6.29 -51.93 -0.33 0.81 16 43 H 0.01 0.28 7.20 -51.93 -0.37 -0.09 16 44 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.08 1.17 6.11 -51.93 -0.32 0.85 16 LS Contribution 346.14 15.07 5.22 5.22 Total: -1.00 -31.94 346.14 -8.18 -40.13 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -8.09 Total: 6.74 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -1.06 Total: -11.58 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 0.33 Total: -48.22 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.08 Total: -9.60 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.33 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.94 -8.18 -40.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424102487.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.539 kcal (2) G-P(sol) polarization free energy of solvation -31.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds