Wall clock time and date at job start Tue Mar 31 2020 06:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08992 * 109.47280 * 2 1 4 4 C 1.52996 * 109.46975 * 239.99465 * 2 1 3 5 5 C 1.53000 * 109.47328 * 180.02562 * 4 2 1 6 6 C 1.52997 * 109.47060 * 60.00126 * 5 4 2 7 7 C 1.53006 * 109.47127 * 300.00449 * 6 5 4 8 8 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 9 9 C 1.52997 * 109.47127 * 179.97438 * 7 6 5 10 10 N 1.46500 * 109.47520 * 64.99751 * 9 7 6 11 11 C 1.34772 * 120.00336 * 180.02562 * 10 9 7 12 12 O 1.21276 * 119.99868 * 359.97438 * 11 10 9 13 13 C 1.50699 * 120.00153 * 180.02562 * 11 10 9 14 14 H 1.09000 * 109.47315 * 320.00042 * 13 11 10 15 15 N 1.46898 * 109.47239 * 200.00084 * 13 11 10 16 16 C 1.53000 * 109.47119 * 79.99813 * 13 11 10 17 17 C 1.53007 * 109.46780 * 185.00190 * 16 13 11 18 18 C 1.50704 * 109.46676 * 180.02562 * 17 16 13 19 19 H 1.07999 * 120.00501 * 359.97438 * 18 17 16 20 20 C 1.37878 * 119.99860 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00167 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 120.00175 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46719 * 89.99954 * 22 20 18 24 24 H 1.48492 * 109.47221 * 210.00345 * 22 20 18 25 25 H 1.48506 * 109.46876 * 330.00467 * 22 20 18 26 26 C 1.52997 * 109.47164 * 59.99836 * 7 6 5 27 27 H 1.09001 * 109.47375 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47045 * 300.00240 * 1 2 3 29 29 H 1.09000 * 109.47140 * 60.00147 * 1 2 3 30 30 H 1.09004 * 109.47368 * 60.00217 * 4 2 1 31 31 H 1.09001 * 109.47372 * 300.00372 * 4 2 1 32 32 H 1.09002 * 109.47398 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.47194 * 300.00476 * 5 4 2 34 34 H 1.08998 * 109.47533 * 59.99948 * 6 5 4 35 35 H 1.08996 * 109.47853 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.47346 * 184.99897 * 9 7 6 37 37 H 1.09002 * 109.47196 * 304.99671 * 9 7 6 38 38 H 0.97009 * 119.99712 * 359.97438 * 10 9 7 39 39 H 1.00898 * 111.00244 * 176.04953 * 15 13 11 40 40 H 1.00902 * 110.99754 * 299.99492 * 15 13 11 41 41 H 1.08997 * 109.47222 * 304.99474 * 16 13 11 42 42 H 1.08999 * 109.47239 * 65.00092 * 16 13 11 43 43 H 1.08999 * 109.47347 * 299.99382 * 17 16 13 44 44 H 1.08999 * 109.47315 * 59.99948 * 17 16 13 45 45 H 0.96995 * 120.00390 * 179.97438 * 21 20 18 46 46 H 1.09002 * 109.47045 * 180.02562 * 26 7 6 47 47 H 1.09001 * 109.47375 * 59.99966 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7220 -1.2489 6 6 4.0794 -1.4435 0.0003 7 6 3.5694 -0.7222 1.2496 8 1 3.9331 0.3053 1.2498 9 6 4.0784 -1.4441 2.4988 10 7 5.5384 -1.3419 2.5612 11 6 6.2106 -1.9082 3.5829 12 8 5.6067 -2.5021 4.4509 13 6 7.7125 -1.8025 3.6473 14 1 8.1285 -1.9232 2.6471 15 7 8.2401 -2.8539 4.5271 16 6 8.1040 -0.4307 4.2004 17 6 9.6253 -0.2756 4.1494 18 6 10.0109 1.0754 4.6948 19 1 9.2474 1.7554 5.0425 20 6 11.3386 1.4432 4.7498 21 7 12.2684 0.6154 4.3259 22 14 11.8166 3.1180 5.4251 23 1 12.0413 3.0155 6.8893 24 1 13.0632 3.5808 4.7641 25 1 10.7251 4.0891 5.1586 26 6 2.0394 -0.7216 1.2493 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6766 -0.2076 -2.1392 31 1 1.6765 -1.7490 -1.2491 32 1 3.9332 -1.2355 -2.1391 33 1 3.9337 0.3056 -1.2487 34 1 3.7157 -2.4710 0.0003 35 1 5.1694 -1.4436 0.0009 36 1 3.6437 -0.9845 3.3866 37 1 3.7892 -2.4941 2.4548 38 1 6.0215 -0.8671 1.8667 39 1 9.2490 -2.8451 4.5365 40 1 7.8691 -2.7637 5.4611 41 1 7.6389 0.3499 3.5985 42 1 7.7643 -0.3447 5.2325 43 1 10.0906 -1.0562 4.7514 44 1 9.9650 -0.3617 3.1173 45 1 13.2024 0.8742 4.3643 46 1 1.6761 -0.2074 2.1390 47 1 1.6757 -1.7491 1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424108511.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:52 Heat of formation + Delta-G solvation = -91.613639 kcal Electronic energy + Delta-G solvation = -22371.863738 eV Core-core repulsion = 19166.056957 eV Total energy + Delta-G solvation = -3205.806781 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.89662 -38.92905 -35.62239 -34.93973 -32.84430 -32.57556 -31.45228 -29.87158 -27.18602 -26.63982 -25.44646 -23.50279 -22.35643 -20.86576 -20.62069 -20.09718 -19.60897 -17.29227 -16.22433 -16.03644 -15.52824 -15.23436 -14.81825 -14.58593 -14.43939 -14.36253 -14.02049 -13.87607 -13.59007 -13.06348 -12.96169 -12.67248 -12.53235 -12.18267 -12.10540 -11.98614 -11.69275 -11.59749 -11.28079 -11.10445 -11.07564 -10.91270 -10.70614 -10.67892 -10.41179 -10.25576 -9.98306 -9.88349 -9.27591 -9.18235 -8.90454 -8.44070 -8.16101 -6.08632 -4.11735 2.99767 3.27040 3.33416 3.34191 3.37006 4.32369 4.38294 4.39333 4.45028 4.76793 4.86130 4.97325 5.08862 5.12193 5.19060 5.22456 5.24278 5.27733 5.35764 5.37315 5.45883 5.53354 5.59445 5.62552 5.71167 5.75261 5.77207 5.80071 5.91840 5.95185 5.97754 6.04709 6.07710 6.24484 6.30230 6.53155 6.60398 6.88505 7.46326 7.52607 7.62341 7.75572 7.88573 7.93138 8.31325 8.52871 8.94318 9.53160 11.02307 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019462 B = 0.003036 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.347216 B = 9221.681903 C = 9911.676599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 H 0.070 0.930 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.099 4.099 8 H 0.078 0.922 9 C 0.126 3.874 10 N -0.734 5.734 11 C 0.524 3.476 12 O -0.541 6.541 13 C 0.074 3.926 14 H 0.095 0.905 15 N -0.831 5.831 16 C -0.137 4.137 17 C 0.024 3.976 18 C -0.524 4.524 19 H 0.054 0.946 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.106 4.106 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.400 0.600 39 H 0.354 0.646 40 H 0.345 0.655 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.262 0.738 46 H 0.065 0.935 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.136 -2.586 -11.410 23.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 H 0.088 0.912 4 C -0.152 4.152 5 C -0.158 4.158 6 C -0.153 4.153 7 C -0.118 4.118 8 H 0.096 0.904 9 C 0.002 3.998 10 N -0.387 5.387 11 C 0.311 3.689 12 O -0.417 6.417 13 C -0.041 4.041 14 H 0.113 0.887 15 N -0.363 5.363 16 C -0.177 4.177 17 C -0.013 4.013 18 C -0.562 4.562 19 H 0.073 0.927 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.144 4.144 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.235 0.765 39 H 0.169 0.831 40 H 0.158 0.842 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.036 0.964 44 H 0.037 0.963 45 H 0.071 0.929 46 H 0.083 0.917 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.748 -3.567 -11.291 23.889 hybrid contribution 1.031 2.026 0.548 2.338 sum -19.716 -1.541 -10.744 22.506 Atomic orbital electron populations 1.21832 0.95306 1.01771 1.01606 1.21123 0.95325 0.99713 0.94864 0.91164 1.21604 0.95623 1.00609 0.97346 1.21538 0.95538 1.00909 0.97797 1.21611 1.00594 0.99409 0.93698 1.21413 0.96076 1.00183 0.94125 0.90369 1.21317 0.80418 1.00590 0.97476 1.46015 1.07339 1.57909 1.27454 1.20876 0.90295 0.77046 0.80675 1.90627 1.70389 1.41944 1.38692 1.21472 0.90049 0.93065 0.99509 0.88676 1.58745 1.13601 1.48380 1.15557 1.22373 1.01556 0.93546 1.00188 1.19105 0.87603 0.97196 0.97396 1.21188 0.92077 1.01098 1.41821 0.92728 1.25015 0.96668 0.97266 0.95380 1.69947 1.00517 1.35825 1.46945 0.86583 0.77997 0.84247 0.79130 1.20618 1.21151 1.19877 1.21559 0.93968 1.01083 0.97777 0.92730 0.92681 0.92799 0.92207 0.92038 0.91962 0.91885 0.91759 0.91680 0.91801 0.91772 0.76498 0.83117 0.84164 0.92581 0.92720 0.96406 0.96332 0.92879 0.91658 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.19 37.16 0.34 -0.58 16 2 C -0.09 -0.64 2.72 -90.62 -0.25 -0.89 16 3 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.11 -0.78 5.20 -26.73 -0.14 -0.92 16 5 C -0.12 -0.88 5.92 -26.73 -0.16 -1.03 16 6 C -0.12 -0.94 5.08 -26.73 -0.14 -1.08 16 7 C -0.10 -0.85 2.23 -90.62 -0.20 -1.05 16 8 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 9 C 0.13 1.43 5.06 -4.04 -0.02 1.41 16 10 N -0.73 -9.53 5.28 -60.30 -0.32 -9.85 16 11 C 0.52 8.84 7.08 -10.99 -0.08 8.76 16 12 O -0.54 -10.83 16.25 5.56 0.09 -10.74 16 13 C 0.07 1.28 3.21 -68.87 -0.22 1.06 16 14 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 15 N -0.83 -14.64 8.94 -5.66 -0.05 -14.69 16 16 C -0.14 -2.71 4.78 -26.73 -0.13 -2.83 16 17 C 0.02 0.59 4.74 -27.88 -0.13 0.45 16 18 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 19 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 21 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 22 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 26 C -0.11 -0.81 4.48 -26.73 -0.12 -0.93 16 27 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.55 7.18 -51.93 -0.37 0.18 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 38 H 0.40 4.45 7.65 -40.82 -0.31 4.13 16 39 H 0.35 6.21 7.55 -39.29 -0.30 5.92 16 40 H 0.35 6.18 8.58 -39.29 -0.34 5.84 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 44 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.90 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 369.32 15.07 5.57 5.57 Total: -1.00 -30.99 369.32 -9.47 -40.46 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -8.83 Total: 9.15 kcal Atomic # 6 Polarization: -9.17 SS G_CDS: -1.65 Total: -10.82 kcal Atomic # 7 Polarization: -50.26 SS G_CDS: 0.37 Total: -49.90 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.99 -9.47 -40.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424108511.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.152 kcal (2) G-P(sol) polarization free energy of solvation -30.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds