Wall clock time and date at job start Tue Mar 31 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52997 * 109.47232 * 240.00008 * 2 1 3 5 5 C 1.52996 * 109.47165 * 300.00105 * 4 2 1 6 6 C 1.53002 * 109.46972 * 300.00293 * 5 4 2 7 7 C 1.52997 * 109.47415 * 59.99860 * 6 5 4 8 8 H 1.09000 * 109.47140 * 59.99976 * 7 6 5 9 9 C 1.52999 * 109.47269 * 180.02562 * 7 6 5 10 10 N 1.46504 * 109.46795 * 294.99743 * 9 7 6 11 11 C 1.34774 * 120.00039 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00216 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00355 * 179.97438 * 11 10 9 14 14 H 1.09004 * 109.46960 * 320.00391 * 13 11 10 15 15 N 1.46893 * 109.47761 * 200.00168 * 13 11 10 16 16 C 1.53000 * 109.46896 * 79.99656 * 13 11 10 17 17 C 1.53004 * 109.47290 * 185.00177 * 16 13 11 18 18 C 1.50703 * 109.47355 * 180.02562 * 17 16 13 19 19 H 1.07996 * 119.99745 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00012 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00062 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00095 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47019 * 60.00164 * 22 20 18 24 24 H 1.48501 * 109.47246 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46913 * 300.00300 * 22 20 18 26 26 C 1.52999 * 109.46991 * 119.99445 * 2 1 3 27 27 H 1.09000 * 109.47611 * 300.00488 * 1 2 3 28 28 H 1.09001 * 109.47289 * 59.99916 * 1 2 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47140 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47375 * 60.00133 * 4 2 1 32 32 H 1.08992 * 109.47534 * 180.02562 * 5 4 2 33 33 H 1.08996 * 109.47134 * 59.99508 * 5 4 2 34 34 H 1.09000 * 109.46986 * 299.99742 * 6 5 4 35 35 H 1.09001 * 109.47601 * 180.02562 * 6 5 4 36 36 H 1.08997 * 109.47756 * 54.99411 * 9 7 6 37 37 H 1.09001 * 109.47317 * 175.00294 * 9 7 6 38 38 H 0.97002 * 120.00414 * 359.97438 * 10 9 7 39 39 H 1.00909 * 110.99782 * 300.00365 * 15 13 11 40 40 H 1.00900 * 110.99865 * 63.94752 * 15 13 11 41 41 H 1.08994 * 109.47670 * 305.00784 * 16 13 11 42 42 H 1.09005 * 109.47174 * 65.00838 * 16 13 11 43 43 H 1.09003 * 109.47050 * 300.00674 * 17 16 13 44 44 H 1.08993 * 109.47135 * 60.00304 * 17 16 13 45 45 H 0.97002 * 119.99811 * 179.97438 * 21 20 18 46 46 H 1.08993 * 109.47839 * 300.00447 * 26 2 1 47 47 H 1.09000 * 109.47160 * 180.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1637 -1.2492 6 6 2.0399 -2.8849 0.0001 7 6 1.5299 -2.1637 1.2493 8 1 0.4399 -2.1637 1.2492 9 6 2.0404 -2.8845 2.4985 10 7 1.4566 -4.2268 2.5605 11 6 1.7651 -5.0493 3.5827 12 8 2.5257 -4.6781 4.4515 13 6 1.1642 -6.4298 3.6468 14 1 0.1199 -6.3862 3.3377 15 7 1.2467 -6.9365 5.0231 16 6 1.9341 -7.3650 2.7121 17 6 1.2492 -8.7329 2.6817 18 6 2.0078 -9.6542 1.7615 19 1 2.8904 -9.2997 1.2498 20 6 1.5758 -10.9499 1.5736 21 7 0.5013 -11.3817 2.1970 22 14 2.5157 -12.0917 0.4324 23 1 3.9087 -12.2457 0.9235 24 1 1.8510 -13.4194 0.4030 25 1 2.5343 -11.5175 -0.9370 26 6 2.0399 -0.7211 1.2493 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 -0.7216 -1.2490 31 1 1.6767 -0.2074 -2.1392 32 1 1.8937 -2.6777 -2.1389 33 1 0.4400 -2.1637 -1.2492 34 1 3.1299 -2.8849 0.0001 35 1 1.6770 -3.9127 -0.0001 36 1 3.1267 -2.9625 2.4548 37 1 1.7519 -2.3216 3.3862 38 1 0.8475 -4.5234 1.8663 39 1 2.2057 -6.9862 5.3332 40 1 0.6929 -6.3721 5.6499 41 1 1.9482 -6.9434 1.7071 42 1 2.9564 -7.4785 3.0729 43 1 1.2351 -9.1545 3.6867 44 1 0.2270 -8.6195 2.3209 45 1 0.1971 -12.2932 2.0645 46 1 1.6766 -0.2074 2.1393 47 1 3.1299 -0.7207 1.2496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424108513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:54 Heat of formation + Delta-G solvation = -86.270966 kcal Electronic energy + Delta-G solvation = -22627.654076 eV Core-core repulsion = 19422.078971 eV Total energy + Delta-G solvation = -3205.575105 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.10382 -39.18748 -35.43981 -34.91324 -32.78076 -32.06291 -31.48642 -30.07075 -27.13917 -26.97026 -25.44885 -23.32904 -22.62457 -21.33179 -20.61333 -19.77808 -18.84750 -17.19214 -16.32281 -16.06976 -15.82841 -15.35056 -15.09416 -14.71859 -14.58329 -14.33229 -14.13455 -13.70522 -13.50110 -13.32229 -12.91499 -12.46675 -12.28037 -12.23238 -11.98830 -11.85002 -11.75067 -11.52009 -11.31837 -11.19824 -10.87005 -10.65812 -10.56042 -10.53596 -10.31294 -10.25284 -10.07337 -9.77946 -9.35417 -9.01798 -8.97330 -8.33107 -8.18184 -5.92791 -3.95024 2.83007 3.33305 3.36607 3.41150 3.43675 4.33031 4.37621 4.41073 4.50830 4.78818 4.87512 4.94517 4.95131 5.08299 5.10580 5.16028 5.24210 5.28726 5.39018 5.42593 5.46882 5.53821 5.55753 5.63908 5.70897 5.71646 5.76465 5.86253 5.91716 5.94081 5.96777 6.05200 6.10321 6.25541 6.44156 6.52233 6.67619 7.10489 7.41151 7.64441 7.77076 7.82481 7.97564 8.14481 8.37008 8.49611 9.12881 9.68034 11.18088 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017731 B = 0.003394 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.754418 B = 8247.876972 C = 9363.817839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.090 4.090 3 H 0.068 0.932 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.117 4.117 7 C -0.100 4.100 8 H 0.080 0.920 9 C 0.122 3.878 10 N -0.729 5.729 11 C 0.482 3.518 12 O -0.556 6.556 13 C 0.078 3.922 14 H 0.097 0.903 15 N -0.807 5.807 16 C -0.095 4.095 17 C 0.032 3.968 18 C -0.523 4.523 19 H 0.051 0.949 20 C 0.058 3.942 21 N -0.893 5.893 22 Si 0.889 3.111 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.278 1.278 26 C -0.106 4.106 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.402 0.598 39 H 0.347 0.653 40 H 0.333 0.667 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.035 0.965 44 H 0.013 0.987 45 H 0.260 0.740 46 H 0.063 0.937 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.485 23.651 -4.632 24.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.153 4.153 5 C -0.159 4.159 6 C -0.154 4.154 7 C -0.118 4.118 8 H 0.098 0.902 9 C -0.002 4.002 10 N -0.382 5.382 11 C 0.267 3.733 12 O -0.434 6.434 13 C -0.038 4.038 14 H 0.115 0.885 15 N -0.335 5.335 16 C -0.133 4.133 17 C -0.006 4.006 18 C -0.562 4.562 19 H 0.069 0.931 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.717 3.283 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.204 1.204 26 C -0.144 4.144 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.237 0.763 39 H 0.161 0.839 40 H 0.145 0.855 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.031 0.969 45 H 0.070 0.930 46 H 0.082 0.918 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.377 23.073 -4.257 23.466 hybrid contribution 0.663 0.205 -0.792 1.053 sum 0.286 23.278 -5.049 23.821 Atomic orbital electron populations 1.21956 0.95313 1.02262 1.01403 1.21075 0.95968 0.98951 0.94888 0.91354 1.21575 1.00566 0.95819 0.97307 1.21568 1.01043 0.95409 0.97874 1.21617 1.01138 0.99086 0.93596 1.21443 1.01128 0.95093 0.94154 0.90209 1.21362 0.98379 0.83015 0.97445 1.46184 1.49510 1.15213 1.27305 1.22733 0.81186 0.88637 0.80696 1.90641 1.36542 1.76973 1.39265 1.21831 1.01114 0.87996 0.92861 0.88525 1.59005 1.17264 1.55715 1.01509 1.21648 0.98809 0.97588 0.95255 1.19010 0.94874 0.88576 0.98096 1.21248 1.11481 0.96658 1.26767 0.93050 1.24988 0.95116 0.98125 0.96073 1.69966 1.23473 1.17044 1.42726 0.86714 0.80147 0.80080 0.81354 1.20314 1.21333 1.20373 1.21526 1.00838 0.94322 0.97745 0.92881 0.92914 0.91881 0.92039 0.92177 0.91925 0.91622 0.91733 0.91499 0.91801 0.91957 0.76338 0.83857 0.85509 0.92881 0.92896 0.94683 0.96900 0.93046 0.91783 0.91663 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.50 37.16 0.32 -0.68 16 2 C -0.09 -0.61 3.19 -90.62 -0.29 -0.90 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 4 C -0.12 -0.80 5.45 -26.73 -0.15 -0.95 16 5 C -0.12 -0.93 5.65 -26.73 -0.15 -1.08 16 6 C -0.12 -1.01 5.08 -26.73 -0.14 -1.15 16 7 C -0.10 -0.83 1.95 -90.62 -0.18 -1.00 16 8 H 0.08 0.64 6.43 -51.93 -0.33 0.31 16 9 C 0.12 1.34 5.06 -4.04 -0.02 1.32 16 10 N -0.73 -9.08 5.28 -60.29 -0.32 -9.40 16 11 C 0.48 7.68 7.07 -10.99 -0.08 7.60 16 12 O -0.56 -10.47 16.25 5.55 0.09 -10.38 16 13 C 0.08 1.32 3.15 -68.87 -0.22 1.10 16 14 H 0.10 1.53 8.14 -51.93 -0.42 1.11 16 15 N -0.81 -13.86 8.44 -5.66 -0.05 -13.91 16 16 C -0.09 -1.92 4.78 -26.73 -0.13 -2.05 16 17 C 0.03 0.81 4.86 -27.88 -0.14 0.67 16 18 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 19 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 22 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 C -0.11 -0.79 4.73 -26.73 -0.13 -0.92 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.43 4.81 -51.93 -0.25 0.18 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.49 6.43 -51.93 -0.33 0.16 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.63 7.18 -51.93 -0.37 0.25 16 36 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.40 4.30 7.66 -40.82 -0.31 3.99 16 39 H 0.35 6.08 8.58 -39.29 -0.34 5.74 16 40 H 0.33 4.97 9.06 -39.29 -0.36 4.62 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 43 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 44 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 364.24 15.07 5.49 5.49 Total: -1.00 -32.03 364.24 -9.35 -41.38 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -8.58 Total: 7.93 kcal Atomic # 6 Polarization: -9.91 SS G_CDS: -1.70 Total: -11.61 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.37 Total: -49.57 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.03 -9.35 -41.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424108513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.891 kcal (2) G-P(sol) polarization free energy of solvation -32.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds