Wall clock time and date at job start Tue Mar 31 2020 06:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.52997 * 109.47232 * 240.00008 * 2 1 3 5 5 C 1.52996 * 109.47165 * 300.00105 * 4 2 1 6 6 C 1.53002 * 109.46972 * 300.00293 * 5 4 2 7 7 C 1.52997 * 109.47415 * 59.99860 * 6 5 4 8 8 H 1.09000 * 109.47140 * 59.99976 * 7 6 5 9 9 C 1.52999 * 109.47269 * 180.02562 * 7 6 5 10 10 N 1.46504 * 109.46795 * 294.99743 * 9 7 6 11 11 C 1.34774 * 120.00039 * 180.02562 * 10 9 7 12 12 O 1.21287 * 120.00216 * 0.02562 * 11 10 9 13 13 C 1.50700 * 120.00355 * 179.97438 * 11 10 9 14 14 H 1.09004 * 109.46960 * 320.00391 * 13 11 10 15 15 N 1.46893 * 109.47761 * 200.00168 * 13 11 10 16 16 C 1.53000 * 109.46896 * 79.99656 * 13 11 10 17 17 C 1.53004 * 109.47290 * 185.00177 * 16 13 11 18 18 C 1.50703 * 109.47355 * 180.02562 * 17 16 13 19 19 H 1.07996 * 119.99745 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00012 * 179.97438 * 18 17 16 21 21 N 1.31516 * 120.00062 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00095 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47019 * 60.00164 * 22 20 18 24 24 H 1.48501 * 109.47246 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46913 * 300.00300 * 22 20 18 26 26 C 1.52999 * 109.46991 * 119.99445 * 2 1 3 27 27 H 1.09000 * 109.47611 * 300.00488 * 1 2 3 28 28 H 1.09001 * 109.47289 * 59.99916 * 1 2 3 29 29 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47140 * 180.02562 * 4 2 1 31 31 H 1.09001 * 109.47375 * 60.00133 * 4 2 1 32 32 H 1.08992 * 109.47534 * 180.02562 * 5 4 2 33 33 H 1.08996 * 109.47134 * 59.99508 * 5 4 2 34 34 H 1.09000 * 109.46986 * 299.99742 * 6 5 4 35 35 H 1.09001 * 109.47601 * 180.02562 * 6 5 4 36 36 H 1.08997 * 109.47756 * 54.99411 * 9 7 6 37 37 H 1.09001 * 109.47317 * 175.00294 * 9 7 6 38 38 H 0.97002 * 120.00414 * 359.97438 * 10 9 7 39 39 H 1.00909 * 110.99782 * 300.00365 * 15 13 11 40 40 H 1.00900 * 110.99865 * 63.94752 * 15 13 11 41 41 H 1.08994 * 109.47670 * 305.00784 * 16 13 11 42 42 H 1.09005 * 109.47174 * 65.00838 * 16 13 11 43 43 H 1.09003 * 109.47050 * 300.00674 * 17 16 13 44 44 H 1.08993 * 109.47135 * 60.00304 * 17 16 13 45 45 H 0.97002 * 119.99811 * 179.97438 * 21 20 18 46 46 H 1.08993 * 109.47839 * 300.00447 * 26 2 1 47 47 H 1.09000 * 109.47160 * 180.02562 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.5300 -2.1637 -1.2492 6 6 2.0399 -2.8849 0.0001 7 6 1.5299 -2.1637 1.2493 8 1 0.4399 -2.1637 1.2492 9 6 2.0404 -2.8845 2.4985 10 7 1.4566 -4.2268 2.5605 11 6 1.7651 -5.0493 3.5827 12 8 2.5257 -4.6781 4.4515 13 6 1.1642 -6.4298 3.6468 14 1 0.1199 -6.3862 3.3377 15 7 1.2467 -6.9365 5.0231 16 6 1.9341 -7.3650 2.7121 17 6 1.2492 -8.7329 2.6817 18 6 2.0078 -9.6542 1.7615 19 1 2.8904 -9.2997 1.2498 20 6 1.5758 -10.9499 1.5736 21 7 0.5013 -11.3817 2.1970 22 14 2.5157 -12.0917 0.4324 23 1 3.9087 -12.2457 0.9235 24 1 1.8510 -13.4194 0.4030 25 1 2.5343 -11.5175 -0.9370 26 6 2.0399 -0.7211 1.2493 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 -0.7216 -1.2490 31 1 1.6767 -0.2074 -2.1392 32 1 1.8937 -2.6777 -2.1389 33 1 0.4400 -2.1637 -1.2492 34 1 3.1299 -2.8849 0.0001 35 1 1.6770 -3.9127 -0.0001 36 1 3.1267 -2.9625 2.4548 37 1 1.7519 -2.3216 3.3862 38 1 0.8475 -4.5234 1.8663 39 1 2.2057 -6.9862 5.3332 40 1 0.6929 -6.3721 5.6499 41 1 1.9482 -6.9434 1.7071 42 1 2.9564 -7.4785 3.0729 43 1 1.2351 -9.1545 3.6867 44 1 0.2270 -8.6195 2.3209 45 1 0.1971 -12.2932 2.0645 46 1 1.6766 -0.2074 2.1393 47 1 3.1299 -0.7207 1.2496 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424108513.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:54 Heat of formation + Delta-G solvation = -107.389594 kcal Electronic energy + Delta-G solvation = -22628.569849 eV Core-core repulsion = 19422.078971 eV Total energy + Delta-G solvation = -3206.490877 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.17958 -40.06359 -36.87400 -36.10474 -34.80245 -32.80402 -32.20931 -31.91166 -28.46537 -27.61862 -26.84930 -24.89853 -23.26600 -22.40171 -22.00293 -21.12976 -19.48104 -18.68323 -18.03161 -17.40891 -16.89358 -16.46511 -16.40352 -16.04545 -15.61187 -15.34270 -15.03442 -14.87684 -14.58052 -14.27114 -14.24028 -13.82641 -13.54435 -13.42434 -13.19593 -12.89613 -12.77110 -12.53284 -12.45607 -12.38336 -12.26310 -11.89205 -11.82281 -11.75734 -11.63971 -11.25980 -11.16163 -11.01268 -10.91851 -10.83205 -10.47890 -10.11212 -9.61350 -8.13122 -6.23532 1.42106 1.44954 1.51570 1.53677 2.21490 2.45326 3.19788 3.58510 3.63493 3.74321 3.78057 3.88784 4.10917 4.16813 4.28317 4.31283 4.33095 4.47150 4.49972 4.56458 4.64260 4.70913 4.78698 4.82218 4.85064 4.95287 4.99925 5.04804 5.14591 5.17850 5.25671 5.28749 5.30281 5.38729 5.40831 5.46919 5.52605 5.57609 5.66706 5.85309 5.99374 6.10433 6.31146 6.46026 6.54597 6.95061 7.15853 7.44565 8.97906 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017731 B = 0.003394 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.754418 B = 8247.876972 C = 9363.817839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 H 0.075 0.925 4 C -0.114 4.114 5 C -0.120 4.120 6 C -0.117 4.117 7 C -0.088 4.088 8 H 0.088 0.912 9 C 0.123 3.877 10 N -0.714 5.714 11 C 0.487 3.513 12 O -0.586 6.586 13 C 0.085 3.915 14 H 0.111 0.889 15 N -0.819 5.819 16 C -0.081 4.081 17 C 0.040 3.960 18 C -0.545 4.545 19 H 0.055 0.945 20 C 0.002 3.998 21 N -0.930 5.930 22 Si 0.959 3.041 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.265 1.265 26 C -0.105 4.105 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.051 0.949 37 H 0.060 0.940 38 H 0.412 0.588 39 H 0.345 0.655 40 H 0.346 0.654 41 H 0.067 0.933 42 H 0.040 0.960 43 H 0.005 0.995 44 H -0.005 1.005 45 H 0.262 0.738 46 H 0.068 0.932 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.391 24.821 -5.986 25.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.106 4.106 3 H 0.094 0.906 4 C -0.152 4.152 5 C -0.157 4.157 6 C -0.155 4.155 7 C -0.107 4.107 8 H 0.106 0.894 9 C 0.000 4.000 10 N -0.366 5.366 11 C 0.272 3.728 12 O -0.466 6.466 13 C -0.031 4.031 14 H 0.128 0.872 15 N -0.348 5.348 16 C -0.119 4.119 17 C 0.003 3.997 18 C -0.583 4.583 19 H 0.074 0.926 20 C -0.196 4.196 21 N -0.570 5.570 22 Si 0.784 3.216 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.190 1.190 26 C -0.143 4.143 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.249 0.751 39 H 0.158 0.842 40 H 0.160 0.840 41 H 0.086 0.914 42 H 0.059 0.941 43 H 0.023 0.977 44 H 0.013 0.987 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.298 24.275 -5.641 24.923 hybrid contribution 0.613 -0.135 -0.363 0.725 sum 0.315 24.140 -6.003 24.877 Atomic orbital electron populations 1.21950 0.94984 1.02152 1.01796 1.21063 0.96182 0.99147 0.94212 0.90635 1.21571 1.00416 0.95385 0.97798 1.21552 1.01287 0.95735 0.97123 1.21610 1.00625 0.98893 0.94344 1.21366 1.01470 0.95301 0.92529 0.89351 1.21457 0.97645 0.82143 0.98793 1.46087 1.48797 1.15398 1.26285 1.22353 0.80804 0.88499 0.81124 1.90633 1.37884 1.77489 1.40615 1.21640 1.01336 0.88008 0.92114 0.87169 1.58983 1.17348 1.56493 1.01986 1.21381 0.97859 0.95676 0.97021 1.18820 0.94193 0.91046 0.95675 1.21713 1.11837 0.97591 1.27206 0.92639 1.25897 0.96024 0.99950 0.97699 1.70099 1.25081 1.17572 1.44236 0.85599 0.78712 0.77778 0.79521 1.19655 1.20920 1.19025 1.21524 1.00696 0.93628 0.98469 0.92662 0.92422 0.92201 0.92321 0.91428 0.92096 0.91161 0.92583 0.92254 0.93031 0.92121 0.75083 0.84200 0.84049 0.91437 0.94080 0.97672 0.98681 0.92916 0.91329 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.50 71.98 0.61 -1.03 16 2 C -0.09 -1.00 3.19 -10.80 -0.03 -1.03 16 3 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 4 C -0.11 -1.38 5.45 30.59 0.17 -1.21 16 5 C -0.12 -1.63 5.65 30.59 0.17 -1.46 16 6 C -0.12 -1.88 5.08 30.59 0.16 -1.72 16 7 C -0.09 -1.32 1.95 -10.79 -0.02 -1.34 16 8 H 0.09 1.22 6.43 -2.39 -0.02 1.21 16 9 C 0.12 2.56 5.06 86.38 0.44 2.99 16 10 N -0.71 -16.80 5.28 -463.05 -2.45 -19.24 16 11 C 0.49 15.08 7.07 87.66 0.62 15.70 16 12 O -0.59 -21.75 16.25 -3.05 -0.05 -21.80 16 13 C 0.08 2.82 3.15 44.17 0.14 2.96 16 14 H 0.11 3.37 8.14 -2.38 -0.02 3.35 16 15 N -0.82 -28.15 8.44 -171.81 -1.45 -29.60 16 16 C -0.08 -3.27 4.78 30.60 0.15 -3.13 16 17 C 0.04 2.08 4.86 29.85 0.15 2.22 16 18 C -0.55 -31.07 9.11 25.60 0.23 -30.83 16 19 H 0.06 3.04 7.74 -2.91 -0.02 3.02 16 20 C 0.00 0.12 5.46 84.65 0.46 0.59 16 21 N -0.93 -56.82 13.29 21.44 0.28 -56.54 16 22 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 26 C -0.11 -1.38 4.73 30.60 0.14 -1.23 16 27 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.69 4.81 -2.39 -0.01 0.67 16 30 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.07 0.90 6.43 -2.39 -0.02 0.89 16 34 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.06 1.03 7.18 -2.39 -0.02 1.02 16 36 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.41 8.08 7.66 -92.71 -0.71 7.37 16 39 H 0.34 12.18 8.58 -89.69 -0.77 11.41 16 40 H 0.35 10.20 9.06 -89.69 -0.81 9.39 16 41 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.04 1.74 8.14 -2.38 -0.02 1.73 16 43 H 0.00 0.28 7.75 -2.39 -0.02 0.26 16 44 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 46 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -68.18 364.24 0.41 -67.77 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -1.33 Total: 31.45 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 3.38 Total: -18.53 kcal Atomic # 7 Polarization: -101.77 SS G_CDS: -3.61 Total: -105.38 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.05 Total: -21.80 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -68.18 0.41 -67.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424108513.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.620 kcal (2) G-P(sol) polarization free energy of solvation -68.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds