Wall clock time and date at job start Tue Mar 31 2020 06:12:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.46879 * 2 1 4 4 C 1.53002 * 109.46886 * 239.99409 * 2 1 3 5 5 C 1.53002 * 109.47128 * 300.00140 * 4 2 1 6 6 C 1.52992 * 109.47106 * 300.00123 * 5 4 2 7 7 C 1.52997 * 109.47482 * 60.00162 * 6 5 4 8 8 H 1.09002 * 109.47153 * 59.99783 * 7 6 5 9 9 C 1.53000 * 109.47060 * 180.02562 * 7 6 5 10 10 N 1.46506 * 109.46901 * 294.99627 * 9 7 6 11 11 C 1.34778 * 119.99654 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00192 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.99737 * 180.02562 * 11 10 9 14 14 H 1.09001 * 109.47069 * 39.99949 * 13 11 10 15 15 N 1.46903 * 109.47191 * 159.99920 * 13 11 10 16 16 C 1.52995 * 109.47393 * 280.00199 * 13 11 10 17 17 C 1.53003 * 109.47465 * 174.99957 * 16 13 11 18 18 C 1.50695 * 109.47201 * 179.97438 * 17 16 13 19 19 H 1.08004 * 120.00094 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00090 * 179.97438 * 18 17 16 21 21 N 1.31517 * 119.99960 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 120.00230 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47222 * 60.00077 * 22 20 18 24 24 H 1.48501 * 109.47352 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47016 * 300.00479 * 22 20 18 26 26 C 1.52997 * 109.46974 * 119.99820 * 2 1 3 27 27 H 1.09000 * 109.46866 * 300.00405 * 1 2 3 28 28 H 1.08996 * 109.47261 * 60.00013 * 1 2 3 29 29 H 1.09001 * 109.47377 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46698 * 60.00234 * 4 2 1 31 31 H 1.09002 * 109.46838 * 179.97438 * 4 2 1 32 32 H 1.09002 * 109.47070 * 60.00059 * 5 4 2 33 33 H 1.08996 * 109.46550 * 179.97438 * 5 4 2 34 34 H 1.09002 * 109.47103 * 299.99915 * 6 5 4 35 35 H 1.08998 * 109.46862 * 180.02562 * 6 5 4 36 36 H 1.08990 * 109.47170 * 54.99895 * 9 7 6 37 37 H 1.09001 * 109.46952 * 174.99972 * 9 7 6 38 38 H 0.97000 * 119.99867 * 0.02562 * 10 9 7 39 39 H 1.00900 * 110.99463 * 60.00015 * 15 13 11 40 40 H 1.00897 * 111.00168 * 183.95801 * 15 13 11 41 41 H 1.09008 * 109.47261 * 295.00264 * 16 13 11 42 42 H 1.08996 * 109.47316 * 54.99814 * 16 13 11 43 43 H 1.08996 * 109.46843 * 300.00200 * 17 16 13 44 44 H 1.09001 * 109.46847 * 60.00095 * 17 16 13 45 45 H 0.96995 * 119.99746 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.47140 * 299.99606 * 26 2 1 47 47 H 1.09002 * 109.47497 * 179.97438 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5299 -2.1639 -1.2491 6 6 2.0399 -2.8850 0.0002 7 6 1.5300 -2.1637 1.2494 8 1 0.4399 -2.1636 1.2494 9 6 2.0405 -2.8845 2.4986 10 7 1.4567 -4.2268 2.5607 11 6 1.7654 -5.0492 3.5829 12 8 2.5260 -4.6780 4.4516 13 6 1.1654 -6.4301 3.6465 14 1 1.1420 -6.8626 2.6462 15 7 1.9797 -7.2778 4.5276 16 6 -0.2593 -6.3424 4.1975 17 6 -0.9123 -7.7251 4.1456 18 6 -2.3153 -7.6387 4.6889 19 1 -2.7026 -6.6921 5.0360 20 6 -3.1048 -8.7678 4.7418 21 7 -2.6333 -9.9203 4.3187 22 14 -4.8441 -8.6606 5.4145 23 1 -5.6345 -7.7084 4.5937 24 1 -5.4779 -10.0026 5.3644 25 1 -4.8025 -8.1856 6.8209 26 6 2.0400 -0.7212 1.2492 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 1.6767 -0.2076 -2.1391 31 1 3.1300 -0.7210 -1.2494 32 1 0.4399 -2.1638 -1.2490 33 1 1.8929 -2.6776 -2.1392 34 1 3.1299 -2.8851 0.0002 35 1 1.6769 -3.9127 0.0000 36 1 3.1267 -2.9624 2.4547 37 1 1.7522 -2.3215 3.3863 38 1 0.8481 -4.5236 1.8662 39 1 2.0169 -6.8979 5.4616 40 1 1.6354 -8.2262 4.5364 41 1 -0.2288 -5.9934 5.2297 42 1 -0.8395 -5.6437 3.5948 43 1 -0.9427 -8.0740 3.1135 44 1 -0.3321 -8.4237 4.7484 45 1 -3.1886 -10.7147 4.3563 46 1 1.6767 -0.2073 2.1392 47 1 3.1300 -0.7216 1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424108515.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:57 Heat of formation + Delta-G solvation = -87.159325 kcal Electronic energy + Delta-G solvation = -22579.394905 eV Core-core repulsion = 19373.781278 eV Total energy + Delta-G solvation = -3205.613627 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.02091 -39.08241 -35.61476 -34.89591 -32.84159 -32.03331 -31.45631 -29.87070 -27.17286 -27.00108 -25.43790 -23.52154 -22.62016 -21.31067 -20.67656 -19.75354 -18.82879 -17.33721 -16.22916 -16.12961 -15.71505 -15.26218 -14.75156 -14.53921 -14.44730 -14.37323 -14.12596 -13.82937 -13.55083 -13.00712 -12.93215 -12.86833 -12.40279 -12.21185 -12.07298 -11.85206 -11.71098 -11.64698 -11.29386 -11.17041 -11.06988 -10.90390 -10.70559 -10.51549 -10.29215 -10.23358 -9.97828 -9.87878 -9.28250 -9.18507 -8.90170 -8.43689 -8.16030 -6.08424 -4.11630 2.99901 3.28372 3.33215 3.34181 3.36339 4.35847 4.39307 4.39830 4.42806 4.81724 4.91656 4.97488 5.09269 5.10252 5.14878 5.22137 5.26112 5.27822 5.32299 5.42124 5.50611 5.57118 5.61086 5.66120 5.72766 5.76771 5.77333 5.80354 5.92342 5.96003 5.98989 6.06396 6.12088 6.27718 6.30212 6.53157 6.60683 6.88542 7.46362 7.52528 7.62436 7.75728 7.88639 7.93241 8.31441 8.53041 8.94188 9.53191 11.02469 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.018104 B = 0.003256 C = 0.002962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.258587 B = 8597.286370 C = 9450.590276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.090 4.090 3 H 0.068 0.932 4 C -0.115 4.115 5 C -0.122 4.122 6 C -0.115 4.115 7 C -0.101 4.101 8 H 0.081 0.919 9 C 0.126 3.874 10 N -0.734 5.734 11 C 0.524 3.476 12 O -0.541 6.541 13 C 0.074 3.926 14 H 0.095 0.905 15 N -0.831 5.831 16 C -0.137 4.137 17 C 0.025 3.975 18 C -0.525 4.525 19 H 0.054 0.946 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 C -0.106 4.106 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.060 0.940 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.400 0.600 39 H 0.345 0.655 40 H 0.354 0.646 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.018 0.982 44 H 0.018 0.982 45 H 0.262 0.738 46 H 0.065 0.935 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.543 17.680 -11.396 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.109 4.109 3 H 0.086 0.914 4 C -0.152 4.152 5 C -0.159 4.159 6 C -0.153 4.153 7 C -0.119 4.119 8 H 0.099 0.901 9 C 0.002 3.998 10 N -0.387 5.387 11 C 0.311 3.689 12 O -0.417 6.417 13 C -0.041 4.041 14 H 0.113 0.887 15 N -0.363 5.363 16 C -0.177 4.177 17 C -0.012 4.012 18 C -0.563 4.563 19 H 0.072 0.928 20 C -0.143 4.143 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 C -0.144 4.144 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.235 0.765 39 H 0.158 0.842 40 H 0.169 0.831 41 H 0.073 0.927 42 H 0.074 0.926 43 H 0.037 0.963 44 H 0.036 0.964 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.671 17.921 -11.273 23.276 hybrid contribution -2.242 -0.267 0.538 2.321 sum 7.429 17.654 -10.735 21.957 Atomic orbital electron populations 1.21963 0.95245 1.02342 1.01461 1.21079 0.96023 0.98943 0.94846 0.91351 1.21570 1.00484 0.95786 0.97376 1.21574 1.01156 0.95472 0.97734 1.21601 1.00986 0.98959 0.93721 1.21451 1.01337 0.95086 0.94070 0.90056 1.21324 0.98152 0.82834 0.97524 1.46014 1.49903 1.15384 1.27402 1.20877 0.80281 0.87055 0.80684 1.90627 1.35797 1.76563 1.38665 1.21471 0.92864 0.90260 0.99496 0.88679 1.58742 1.55981 1.06079 1.15487 1.22374 0.92732 1.02372 1.00197 1.19096 0.95171 0.89599 0.97382 1.21152 0.98412 0.94714 1.42028 0.92777 1.25011 0.98493 0.95421 0.95366 1.69939 1.37007 0.99360 1.46915 0.86641 0.84529 0.77146 0.79606 1.20215 1.21210 1.20221 1.21526 1.00762 0.94337 0.97811 0.92780 0.92947 0.91838 0.92214 0.92085 0.91554 0.92079 0.91800 0.91718 0.91803 0.91826 0.76519 0.84163 0.83115 0.92723 0.92587 0.96346 0.96408 0.92819 0.91657 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.50 37.16 0.32 -0.77 16 2 C -0.09 -0.63 3.20 -90.62 -0.29 -0.92 16 3 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 4 C -0.11 -0.78 5.45 -26.73 -0.15 -0.92 16 5 C -0.12 -0.89 5.65 -26.73 -0.15 -1.04 16 6 C -0.12 -0.94 5.07 -26.74 -0.14 -1.07 16 7 C -0.10 -0.86 1.95 -90.62 -0.18 -1.04 16 8 H 0.08 0.71 6.43 -51.93 -0.33 0.38 16 9 C 0.13 1.43 5.06 -4.04 -0.02 1.40 16 10 N -0.73 -9.52 5.28 -60.29 -0.32 -9.84 16 11 C 0.52 8.84 7.08 -10.99 -0.08 8.76 16 12 O -0.54 -10.84 16.25 5.56 0.09 -10.75 16 13 C 0.07 1.28 3.21 -68.87 -0.22 1.06 16 14 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 15 N -0.83 -14.65 8.94 -5.65 -0.05 -14.70 16 16 C -0.14 -2.71 4.78 -26.73 -0.13 -2.84 16 17 C 0.02 0.60 4.74 -27.88 -0.13 0.47 16 18 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 19 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 22 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 26 C -0.11 -0.81 4.73 -26.73 -0.13 -0.94 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.48 4.81 -51.93 -0.25 0.23 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.49 6.43 -51.93 -0.33 0.16 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.55 7.18 -51.93 -0.37 0.17 16 36 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 38 H 0.40 4.44 7.65 -40.82 -0.31 4.13 16 39 H 0.35 6.18 8.58 -39.29 -0.34 5.84 16 40 H 0.35 6.22 7.55 -39.29 -0.30 5.92 16 41 H 0.05 1.13 8.14 -51.92 -0.42 0.71 16 42 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 45 H 0.26 7.26 8.31 -40.82 -0.34 6.93 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 362.28 15.07 5.46 5.46 Total: -1.00 -30.96 362.28 -9.28 -40.24 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -8.48 Total: 9.70 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: -1.70 Total: -11.05 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.37 Total: -49.88 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -30.96 -9.28 -40.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424108515.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.922 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds