Wall clock time and date at job start Tue Mar 31 2020 06:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.47128 * 2 1 4 4 C 1.53003 * 109.47132 * 120.00579 * 2 1 3 5 5 C 1.52999 * 109.47132 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.46660 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.46949 * 60.00083 * 5 4 2 8 8 C 1.34770 * 120.00541 * 84.99915 * 7 5 4 9 9 O 1.21287 * 119.99983 * 359.97438 * 8 7 5 10 10 C 1.50698 * 120.00327 * 179.97438 * 8 7 5 11 11 H 1.09006 * 109.47280 * 40.00030 * 10 8 7 12 12 N 1.46901 * 109.47246 * 160.00005 * 10 8 7 13 13 C 1.52996 * 109.47281 * 279.99983 * 10 8 7 14 14 C 1.53002 * 109.47346 * 174.99629 * 13 10 8 15 15 C 1.50706 * 109.46931 * 179.97438 * 14 13 10 16 16 H 1.07999 * 120.00193 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99398 * 180.02562 * 15 14 13 18 18 N 1.31514 * 119.99350 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00608 * 0.02562 * 17 15 14 20 20 H 1.48493 * 109.47326 * 270.00340 * 19 17 15 21 21 H 1.48506 * 109.46545 * 30.00090 * 19 17 15 22 22 H 1.48498 * 109.47210 * 149.99801 * 19 17 15 23 23 C 1.52993 * 109.47024 * 299.99926 * 5 4 2 24 24 C 1.52995 * 109.47533 * 60.00162 * 23 5 4 25 25 H 1.08997 * 109.46992 * 59.99738 * 24 23 5 26 26 C 1.52997 * 109.47266 * 180.02562 * 24 23 5 27 27 C 1.52999 * 109.46833 * 299.99954 * 24 23 5 28 28 H 1.08997 * 109.47154 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47174 * 299.99821 * 1 2 3 30 30 H 1.09003 * 109.47167 * 59.99986 * 1 2 3 31 31 H 1.09001 * 109.46910 * 59.99482 * 4 2 1 32 32 H 1.09003 * 109.46547 * 300.00310 * 4 2 1 33 33 H 0.97004 * 119.99698 * 264.99444 * 7 5 4 34 34 H 1.00903 * 110.99982 * 296.04149 * 12 10 8 35 35 H 1.00900 * 111.00110 * 60.00327 * 12 10 8 36 36 H 1.09004 * 109.47368 * 54.99817 * 13 10 8 37 37 H 1.08996 * 109.47261 * 295.00202 * 13 10 8 38 38 H 1.09000 * 109.46986 * 60.00254 * 14 13 10 39 39 H 1.08993 * 109.47662 * 300.00031 * 14 13 10 40 40 H 0.97005 * 119.99661 * 179.97438 * 18 17 15 41 41 H 1.09001 * 109.46979 * 180.02562 * 23 5 4 42 42 H 1.09007 * 109.47258 * 299.99836 * 23 5 4 43 43 H 1.08997 * 109.47511 * 59.99833 * 26 24 23 44 44 H 1.09000 * 109.47548 * 180.02562 * 26 24 23 45 45 H 1.09001 * 109.46931 * 299.99759 * 26 24 23 46 46 H 1.09003 * 109.47167 * 180.02562 * 27 24 23 47 47 H 1.09001 * 109.47646 * 299.99727 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5700 -0.7219 1.2489 6 1 3.9332 -1.2355 2.1391 7 7 4.0588 0.6591 1.2487 8 6 4.1880 1.3284 2.4113 9 8 3.8991 0.7876 3.4578 10 6 4.6913 2.7488 2.4111 11 1 4.2571 3.2882 1.5692 12 7 4.3032 3.4061 3.6663 13 6 6.2161 2.7496 2.2855 14 6 6.7169 4.1899 2.1598 15 6 8.2189 4.1906 2.0366 16 1 8.7619 3.2571 2.0465 17 6 8.8997 5.3830 1.9113 18 7 10.2104 5.3835 1.8033 19 14 7.9605 6.9976 1.8949 20 1 7.5968 7.3446 0.4976 21 1 6.7256 6.8601 2.7083 22 1 8.8123 8.0716 2.4660 23 6 4.0794 -1.4434 -0.0004 24 6 3.5695 -0.7221 -1.2496 25 1 3.9332 0.3054 -1.2497 26 6 4.0784 -1.4441 -2.4988 27 6 2.0395 -0.7216 -1.2493 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6766 -1.7490 1.2491 32 1 1.6766 -0.2076 2.1392 33 1 4.2895 1.0918 0.4118 34 1 3.2995 3.4760 3.7425 35 1 4.6937 2.9246 4.4624 36 1 6.5080 2.1850 1.3999 37 1 6.6539 2.2886 3.1708 38 1 6.4251 4.7545 3.0453 39 1 6.2792 4.6509 1.2744 40 1 10.6893 6.2224 1.7148 41 1 5.1694 -1.4442 -0.0004 42 1 3.7157 -2.4710 -0.0002 43 1 3.7144 -2.4714 -2.4985 44 1 3.7156 -0.9300 -3.3888 45 1 5.1685 -1.4448 -2.4992 46 1 1.6762 -0.2081 -2.1395 47 1 1.6757 -1.7491 -1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424121405.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:21 Heat of formation + Delta-G solvation = -103.700157 kcal Electronic energy + Delta-G solvation = -23211.606188 eV Core-core repulsion = 20005.275297 eV Total energy + Delta-G solvation = -3206.330891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.49407 -39.70160 -36.82887 -35.25729 -34.77759 -34.37717 -32.28013 -31.40042 -28.32477 -27.48345 -27.25183 -25.36924 -22.93750 -22.28165 -21.48599 -21.34791 -20.04196 -18.99350 -18.21174 -17.30751 -16.84423 -16.24775 -16.23605 -16.05433 -15.68470 -15.29037 -15.04704 -14.73753 -14.58923 -14.45842 -13.99373 -13.58389 -13.47315 -13.36673 -13.20125 -12.95225 -12.80305 -12.69794 -12.67584 -12.53036 -12.13798 -11.97678 -11.74151 -11.68969 -11.60157 -11.36021 -11.29307 -11.13271 -11.07198 -10.92806 -10.70457 -10.02692 -9.64444 -8.24681 -6.27919 1.40031 1.43810 1.55638 1.57911 2.23867 2.42116 3.11975 3.56392 3.66649 3.74690 3.75687 3.87440 4.07804 4.09667 4.11982 4.27282 4.40035 4.42969 4.49893 4.65043 4.71202 4.73371 4.79022 4.82658 4.84129 4.91737 4.93849 5.01957 5.04043 5.13296 5.14504 5.25953 5.29669 5.38472 5.42996 5.44508 5.49721 5.56485 5.61696 5.65837 5.74295 6.07554 6.32864 6.46886 6.55603 6.80642 7.19967 7.36695 8.92263 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019357 B = 0.003884 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.189578 B = 7208.157646 C = 7732.493120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 H 0.060 0.940 4 C -0.116 4.116 5 C 0.142 3.858 6 H 0.062 0.938 7 N -0.708 5.708 8 C 0.487 3.513 9 O -0.584 6.584 10 C 0.084 3.916 11 H 0.118 0.882 12 N -0.818 5.818 13 C -0.078 4.078 14 C 0.003 3.997 15 C -0.532 4.532 16 H 0.028 0.972 17 C 0.003 3.997 18 N -0.955 5.955 19 Si 0.952 3.048 20 H -0.264 1.264 21 H -0.245 1.245 22 H -0.289 1.289 23 C -0.116 4.116 24 C -0.093 4.093 25 H 0.065 0.935 26 C -0.145 4.145 27 C -0.102 4.102 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.409 0.591 34 H 0.348 0.652 35 H 0.345 0.655 36 H 0.065 0.935 37 H 0.038 0.962 38 H 0.029 0.971 39 H 0.022 0.978 40 H 0.265 0.735 41 H 0.064 0.936 42 H 0.090 0.910 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.051 0.949 46 H 0.070 0.930 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.708 -13.563 -8.551 26.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.107 4.107 3 H 0.079 0.921 4 C -0.155 4.155 5 C 0.037 3.963 6 H 0.080 0.920 7 N -0.360 5.360 8 C 0.272 3.728 9 O -0.464 6.464 10 C -0.032 4.032 11 H 0.135 0.865 12 N -0.347 5.347 13 C -0.117 4.117 14 C -0.035 4.035 15 C -0.570 4.570 16 H 0.046 0.954 17 C -0.193 4.193 18 N -0.596 5.596 19 Si 0.775 3.225 20 H -0.189 1.189 21 H -0.169 1.169 22 H -0.215 1.215 23 C -0.154 4.154 24 C -0.111 4.111 25 H 0.083 0.917 26 C -0.202 4.202 27 C -0.140 4.140 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.080 0.920 31 H 0.099 0.901 32 H 0.061 0.939 33 H 0.247 0.753 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.047 0.953 39 H 0.040 0.960 40 H 0.073 0.927 41 H 0.083 0.917 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.079 0.921 45 H 0.070 0.930 46 H 0.088 0.912 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -21.382 -13.214 -8.114 26.413 hybrid contribution 0.114 -0.070 0.184 0.227 sum -21.268 -13.284 -7.930 26.300 Atomic orbital electron populations 1.21792 0.94632 1.02127 1.01598 1.21069 0.95894 0.99292 0.94451 0.92112 1.21892 0.94197 1.01566 0.97824 1.20998 0.94343 0.81926 0.99039 0.91972 1.46205 1.65985 1.14759 1.09088 1.22325 0.76382 0.90301 0.83751 1.90636 1.52468 1.70466 1.32835 1.21659 0.97072 0.88475 0.96015 0.86473 1.59020 1.16555 1.55689 1.03478 1.21247 0.91005 0.98700 1.00725 1.19367 0.92899 0.94050 0.97149 1.21567 0.92940 0.93059 1.49403 0.95406 1.26010 0.95582 1.03528 0.94202 1.70086 1.08882 1.28108 1.52556 0.85626 0.79370 0.77955 0.79520 1.18851 1.16866 1.21511 1.21858 1.00819 1.00105 0.92578 1.21127 0.95957 0.99533 0.94525 0.91661 1.21793 1.00902 1.00703 0.96822 1.21633 0.94174 1.01124 0.97058 0.92065 0.93623 0.91965 0.90054 0.93914 0.75336 0.83905 0.84150 0.91679 0.94286 0.95310 0.95964 0.92657 0.91736 0.89147 0.91958 0.92105 0.92991 0.91171 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 9.19 71.98 0.66 -1.24 16 2 C -0.09 -1.31 2.56 -10.79 -0.03 -1.33 16 3 H 0.06 1.03 7.60 -2.39 -0.02 1.01 16 4 C -0.12 -2.09 4.88 30.59 0.15 -1.94 16 5 C 0.14 2.86 2.78 44.99 0.13 2.99 16 6 H 0.06 1.57 7.58 -2.39 -0.02 1.55 16 7 N -0.71 -15.96 4.23 -442.55 -1.87 -17.83 16 8 C 0.49 14.18 7.03 87.66 0.62 14.80 16 9 O -0.58 -20.64 15.91 -3.05 -0.05 -20.68 16 10 C 0.08 2.51 3.15 44.17 0.14 2.65 16 11 H 0.12 3.04 8.14 -2.38 -0.02 3.02 16 12 N -0.82 -24.88 8.44 -171.80 -1.45 -26.33 16 13 C -0.08 -3.00 4.78 30.59 0.15 -2.86 16 14 C 0.00 0.13 3.93 29.85 0.12 0.25 16 15 C -0.53 -30.93 9.66 25.60 0.25 -30.68 16 16 H 0.03 1.78 7.99 -2.91 -0.02 1.76 16 17 C 0.00 0.17 5.47 84.66 0.46 0.64 16 18 N -0.96 -60.77 13.96 21.45 0.30 -60.47 16 19 Si 0.95 44.87 27.47 68.60 1.88 46.76 16 20 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.25 -10.91 6.54 99.48 0.65 -10.26 16 22 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 23 C -0.12 -1.77 4.89 30.59 0.15 -1.62 16 24 C -0.09 -1.23 2.55 -10.80 -0.03 -1.25 16 25 H 0.07 0.94 6.51 -2.39 -0.02 0.92 16 26 C -0.14 -1.72 9.19 71.98 0.66 -1.06 16 27 C -0.10 -1.23 4.48 30.59 0.14 -1.09 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.41 7.85 6.87 -92.71 -0.64 7.21 16 34 H 0.35 8.95 9.06 -89.69 -0.81 8.14 16 35 H 0.35 11.11 8.58 -89.69 -0.77 10.34 16 36 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.03 1.37 6.81 -2.39 -0.02 1.35 16 39 H 0.02 0.97 7.57 -2.39 -0.02 0.95 16 40 H 0.26 15.71 8.31 -92.70 -0.77 14.94 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 45 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 46 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -70.37 364.32 1.05 -69.33 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: -1.33 Total: 30.99 kcal Atomic # 6 Polarization: -25.32 SS G_CDS: 3.56 Total: -21.76 kcal Atomic # 7 Polarization: -101.61 SS G_CDS: -3.02 Total: -104.63 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.05 Total: -20.68 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 1.88 Total: 46.76 kcal Total: -70.37 1.05 -69.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424121405.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.373 kcal (2) G-P(sol) polarization free energy of solvation -70.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds