Wall clock time and date at job start Tue Mar 31 2020 06:34:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47452 * 2 1 4 4 C 1.52997 * 109.47131 * 120.00000 * 2 1 3 5 5 C 1.53006 * 109.47127 * 179.97438 * 4 2 1 6 6 H 1.09000 * 109.47050 * 179.97438 * 5 4 2 7 7 N 1.46492 * 109.47363 * 59.99700 * 5 4 2 8 8 C 1.34780 * 120.00132 * 154.99846 * 7 5 4 9 9 O 1.21273 * 119.99697 * 0.02562 * 8 7 5 10 10 C 1.50697 * 119.99941 * 179.97438 * 8 7 5 11 11 H 1.09001 * 109.47348 * 320.00403 * 10 8 7 12 12 N 1.46897 * 109.47360 * 200.00426 * 10 8 7 13 13 C 1.53005 * 109.47092 * 80.00090 * 10 8 7 14 14 C 1.52999 * 109.47381 * 184.99742 * 13 10 8 15 15 C 1.50694 * 109.47324 * 180.02562 * 14 13 10 16 16 H 1.08010 * 120.00055 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00384 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00262 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99803 * 359.97438 * 17 15 14 20 20 H 1.48509 * 109.47199 * 89.99795 * 19 17 15 21 21 H 1.48494 * 109.47436 * 209.99651 * 19 17 15 22 22 H 1.48503 * 109.46997 * 330.00189 * 19 17 15 23 23 C 1.52999 * 109.46626 * 299.99539 * 5 4 2 24 24 C 1.52997 * 109.46991 * 60.00378 * 23 5 4 25 25 H 1.09000 * 109.47611 * 59.99933 * 24 23 5 26 26 C 1.53002 * 109.47143 * 179.97438 * 24 23 5 27 27 C 1.52996 * 109.47131 * 299.99311 * 24 23 5 28 28 H 1.09001 * 109.46997 * 300.00426 * 1 2 3 29 29 H 1.09000 * 109.47054 * 60.00160 * 1 2 3 30 30 H 1.09000 * 109.47380 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47502 * 60.00153 * 4 2 1 32 32 H 1.09001 * 109.47289 * 299.99950 * 4 2 1 33 33 H 0.97006 * 119.99963 * 335.00232 * 7 5 4 34 34 H 1.00896 * 111.00600 * 176.05241 * 12 10 8 35 35 H 1.00907 * 110.99548 * 300.00356 * 12 10 8 36 36 H 1.08997 * 109.47516 * 305.00490 * 13 10 8 37 37 H 1.09006 * 109.46438 * 64.99991 * 13 10 8 38 38 H 1.09007 * 109.46902 * 300.00592 * 14 13 10 39 39 H 1.08995 * 109.47010 * 60.00193 * 14 13 10 40 40 H 0.96999 * 119.99733 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.46719 * 180.02562 * 23 5 4 42 42 H 1.08993 * 109.47839 * 299.99931 * 23 5 4 43 43 H 1.09000 * 109.47312 * 179.97438 * 26 24 23 44 44 H 1.09002 * 109.47593 * 300.00023 * 26 24 23 45 45 H 1.09004 * 109.46930 * 59.99935 * 26 24 23 46 46 H 1.08996 * 109.47452 * 300.00000 * 27 24 23 47 47 H 1.09000 * 109.47054 * 180.02562 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2489 6 1 3.9333 -1.2352 2.1391 7 7 4.0589 0.6591 1.2485 8 6 5.2811 0.9415 1.7415 9 8 5.9763 0.0523 2.1850 10 6 5.7842 2.3620 1.7406 11 1 5.4960 2.8490 0.8089 12 7 7.2482 2.3631 1.8610 13 6 5.1746 3.1197 2.9218 14 6 5.5856 4.5918 2.8504 15 6 4.9858 5.3379 4.0141 16 1 4.3723 4.8146 4.7328 17 6 5.2200 6.6886 4.1617 18 7 4.6961 7.3398 5.1770 19 14 6.2816 7.5935 2.9193 20 1 5.4257 8.1143 1.8230 21 1 6.9715 8.7253 3.5888 22 1 7.2914 6.6604 2.3581 23 6 4.0794 -1.4435 -0.0003 24 6 3.5694 -0.7223 -1.2495 25 1 3.9331 0.3052 -1.2499 26 6 4.0792 -1.4437 -2.4988 27 6 2.0394 -0.7217 -1.2492 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.6767 -1.7489 1.2493 32 1 1.6766 -0.2074 2.1392 33 1 3.5029 1.3704 0.8935 34 1 7.6156 3.3007 1.7982 35 1 7.5409 1.9167 2.7174 36 1 4.0881 3.0434 2.8808 37 1 5.5343 2.6870 3.8555 38 1 6.6723 4.6680 2.8914 39 1 5.2261 5.0244 1.9168 40 1 4.8613 8.2900 5.2810 41 1 5.1694 -1.4443 -0.0003 42 1 3.7157 -2.4710 -0.0001 43 1 3.7155 -0.9301 -3.3888 44 1 5.1692 -1.4438 -2.4989 45 1 3.7158 -2.4713 -2.4987 46 1 1.6757 -1.7492 -1.2490 47 1 1.6761 -0.2083 -2.1394 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424121407.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:24 Heat of formation + Delta-G solvation = -82.044236 kcal Electronic energy + Delta-G solvation = -23211.664058 eV Core-core repulsion = 20006.272238 eV Total energy + Delta-G solvation = -3205.391820 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.38568 -38.60675 -35.60198 -34.16835 -33.67537 -32.79832 -30.46597 -30.29973 -26.87415 -26.73399 -26.50934 -23.93349 -22.02453 -20.85897 -20.74082 -20.01396 -19.10295 -17.44300 -16.64991 -16.07912 -15.49241 -15.22924 -14.92420 -14.49662 -14.31628 -14.20826 -13.89187 -13.71993 -13.38629 -12.92996 -12.75019 -12.68557 -12.61246 -12.49022 -12.13144 -12.03149 -11.91640 -11.81709 -11.41448 -11.37113 -10.99844 -10.97351 -10.65008 -10.36978 -10.33350 -10.14707 -10.07325 -9.88989 -9.35353 -9.31405 -8.91280 -8.62341 -8.29127 -6.11923 -4.11403 2.93959 3.24604 3.30101 3.33198 3.34565 4.37450 4.42053 4.48615 4.50123 4.82925 4.85249 4.99624 5.07495 5.12653 5.20677 5.21212 5.25747 5.40190 5.41469 5.47611 5.48596 5.53022 5.62429 5.62881 5.65245 5.69118 5.74445 5.87762 5.91189 6.03975 6.09461 6.12308 6.15453 6.20131 6.28122 6.34109 6.63866 6.66772 7.09877 7.21921 7.36297 7.66762 7.70819 7.79803 8.44306 8.48994 8.92101 9.49426 11.01330 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.003880 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.857916 B = 7214.270556 C = 7732.851777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 H 0.070 0.930 4 C -0.122 4.122 5 C 0.147 3.853 6 H 0.086 0.914 7 N -0.726 5.726 8 C 0.527 3.473 9 O -0.538 6.538 10 C 0.071 3.929 11 H 0.094 0.906 12 N -0.831 5.831 13 C -0.129 4.129 14 C -0.011 4.011 15 C -0.524 4.524 16 H 0.071 0.929 17 C 0.067 3.933 18 N -0.901 5.901 19 Si 0.881 3.119 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.124 4.124 24 C -0.092 4.092 25 H 0.071 0.929 26 C -0.146 4.146 27 C -0.108 4.108 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.399 0.601 34 H 0.350 0.650 35 H 0.348 0.652 36 H 0.062 0.938 37 H 0.060 0.940 38 H 0.016 0.984 39 H 0.013 0.987 40 H 0.264 0.736 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.052 0.948 46 H 0.061 0.939 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.075 -16.762 -14.193 22.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.160 4.160 5 C 0.042 3.958 6 H 0.104 0.896 7 N -0.380 5.380 8 C 0.313 3.687 9 O -0.414 6.414 10 C -0.044 4.044 11 H 0.112 0.888 12 N -0.362 5.362 13 C -0.169 4.169 14 C -0.048 4.048 15 C -0.561 4.561 16 H 0.089 0.911 17 C -0.134 4.134 18 N -0.540 5.540 19 Si 0.709 3.291 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.190 1.190 23 C -0.162 4.162 24 C -0.110 4.110 25 H 0.089 0.911 26 C -0.203 4.203 27 C -0.145 4.145 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.234 0.766 34 H 0.164 0.836 35 H 0.161 0.839 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.032 0.968 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.071 0.929 46 H 0.080 0.920 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.576 -17.682 -14.447 23.504 hybrid contribution -0.005 1.613 0.156 1.621 sum -5.581 -16.068 -14.291 22.216 Atomic orbital electron populations 1.21820 0.94986 1.01718 1.01904 1.21138 0.95666 0.99681 0.94823 0.91161 1.21898 0.94099 1.01684 0.98330 1.20864 0.93314 0.82923 0.98662 0.89639 1.46114 1.18112 1.09465 1.64310 1.20748 0.80745 0.91108 0.76078 1.90628 1.56106 1.48594 1.46073 1.21511 0.90317 0.91640 1.00960 0.88767 1.58736 1.07274 1.25094 1.45126 1.22194 1.00681 0.97902 0.96103 1.19572 0.96508 0.91128 0.97593 1.21072 1.31857 0.93734 1.09486 0.91089 1.25042 0.95459 0.97577 0.95361 1.69912 1.44841 1.09326 1.29878 0.86762 0.81194 0.79583 0.81611 1.20269 1.21334 1.18978 1.21968 1.01440 0.98837 0.93979 1.21096 0.95104 1.00211 0.94599 0.91051 1.21812 1.01074 1.00188 0.97256 1.21671 0.95018 1.00571 0.97289 0.92462 0.92668 0.92771 0.90600 0.91063 0.76578 0.83574 0.83888 0.91970 0.92084 0.96604 0.96834 0.92637 0.91308 0.91422 0.92868 0.92708 0.92907 0.91985 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.19 37.16 0.34 -0.73 16 2 C -0.09 -0.75 2.55 -90.62 -0.23 -0.98 16 3 H 0.07 0.60 6.51 -51.93 -0.34 0.26 16 4 C -0.12 -1.06 4.89 -26.73 -0.13 -1.19 16 5 C 0.15 1.61 2.78 -67.93 -0.19 1.42 16 6 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 7 N -0.73 -8.93 4.23 -53.81 -0.23 -9.16 16 8 C 0.53 8.33 7.04 -10.99 -0.08 8.26 16 9 O -0.54 -10.17 15.91 5.56 0.09 -10.08 16 10 C 0.07 1.14 3.21 -68.87 -0.22 0.92 16 11 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 12 N -0.83 -13.56 8.94 -5.65 -0.05 -13.61 16 13 C -0.13 -2.43 4.78 -26.73 -0.13 -2.56 16 14 C -0.01 -0.24 3.81 -27.89 -0.11 -0.34 16 15 C -0.52 -14.52 9.66 -34.44 -0.33 -14.85 16 16 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 17 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 19 Si 0.88 21.11 27.47 -169.99 -4.67 16.44 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 21 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 22 H -0.27 -6.01 6.54 56.52 0.37 -5.64 16 23 C -0.12 -1.26 4.88 -26.73 -0.13 -1.39 16 24 C -0.09 -0.82 2.56 -90.62 -0.23 -1.05 16 25 H 0.07 0.72 7.60 -51.93 -0.39 0.33 16 26 C -0.15 -1.20 9.19 37.16 0.34 -0.86 16 27 C -0.11 -0.83 4.48 -26.73 -0.12 -0.95 16 28 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.40 4.30 6.87 -40.82 -0.28 4.02 16 34 H 0.35 5.56 7.55 -39.29 -0.30 5.26 16 35 H 0.35 5.82 8.58 -39.29 -0.34 5.48 16 36 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.02 0.35 5.92 -51.92 -0.31 0.04 16 39 H 0.01 0.29 7.57 -51.93 -0.39 -0.10 16 40 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 41 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 LS Contribution 362.37 15.07 5.46 5.46 Total: -1.00 -31.32 362.37 -8.61 -39.92 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: -8.67 Total: 10.14 kcal Atomic # 6 Polarization: -11.19 SS G_CDS: -1.31 Total: -12.50 kcal Atomic # 7 Polarization: -49.88 SS G_CDS: 0.50 Total: -49.39 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.32 -8.61 -39.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424121407.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.123 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds