Wall clock time and date at job start Tue Mar 31 2020 06:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.47541 * 2 1 4 4 C 1.52999 * 109.46986 * 120.00004 * 2 1 3 5 5 C 1.53003 * 109.47100 * 60.00079 * 4 2 1 6 6 N 1.46496 * 109.46984 * 179.97438 * 5 4 2 7 7 C 1.34778 * 119.99982 * 155.00282 * 6 5 4 8 8 O 1.21287 * 119.99550 * 359.97438 * 7 6 5 9 9 C 1.50700 * 120.00347 * 180.02562 * 7 6 5 10 10 H 1.09006 * 109.46689 * 319.99501 * 9 7 6 11 11 N 1.46899 * 109.46846 * 199.99763 * 9 7 6 12 12 C 1.52996 * 109.47032 * 79.99627 * 9 7 6 13 13 C 1.52998 * 109.46929 * 185.00304 * 12 9 7 14 14 C 1.50706 * 109.47348 * 179.97438 * 13 12 9 15 15 H 1.08000 * 119.99302 * 359.97438 * 14 13 12 16 16 C 1.37871 * 120.00436 * 179.72505 * 14 13 12 17 17 N 1.31515 * 119.99684 * 359.97438 * 16 14 13 18 18 Si 1.86800 * 120.00405 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47050 * 59.99579 * 18 16 14 20 20 H 1.48496 * 109.47289 * 179.97438 * 18 16 14 21 21 H 1.48504 * 109.46492 * 299.99554 * 18 16 14 22 22 C 1.53004 * 109.47049 * 59.99575 * 5 4 2 23 23 C 1.52995 * 109.47163 * 300.00200 * 22 5 4 24 24 H 1.08990 * 109.47560 * 299.99680 * 23 22 5 25 25 C 1.53004 * 109.46789 * 179.97438 * 23 22 5 26 26 C 1.52999 * 109.47481 * 60.00264 * 23 22 5 27 27 H 1.09003 * 109.47174 * 300.00336 * 1 2 3 28 28 H 1.09000 * 109.47009 * 59.99548 * 1 2 3 29 29 H 1.08996 * 109.47237 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47417 * 299.99851 * 4 2 1 31 31 H 1.09001 * 109.46986 * 179.97438 * 4 2 1 32 32 H 1.08993 * 109.46763 * 299.99834 * 5 4 2 33 33 H 0.97006 * 120.00297 * 334.99729 * 6 5 4 34 34 H 1.00910 * 110.99485 * 176.04773 * 11 9 7 35 35 H 1.00897 * 111.00222 * 299.99256 * 11 9 7 36 36 H 1.09000 * 109.47441 * 65.00394 * 12 9 7 37 37 H 1.09002 * 109.47087 * 304.99840 * 12 9 7 38 38 H 1.09001 * 109.47671 * 60.00109 * 13 12 9 39 39 H 1.08998 * 109.47454 * 300.00107 * 13 12 9 40 40 H 0.97004 * 120.00247 * 180.02562 * 17 16 14 41 41 H 1.09001 * 109.47017 * 60.00180 * 22 5 4 42 42 H 1.08996 * 109.46954 * 180.02562 * 22 5 4 43 43 H 1.09001 * 109.47220 * 299.99876 * 25 23 22 44 44 H 1.08996 * 109.47125 * 59.99988 * 25 23 22 45 45 H 1.09000 * 109.46766 * 180.02562 * 25 23 22 46 46 H 1.09000 * 109.47634 * 179.97438 * 26 23 22 47 47 H 1.09001 * 109.47226 * 59.99697 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.5299 -2.1638 1.2492 6 7 2.0187 -2.8545 2.4451 7 6 1.3422 -3.9115 2.9366 8 8 0.3284 -4.2903 2.3892 9 6 1.8446 -4.6217 4.1671 10 1 2.9310 -4.6998 4.1234 11 7 1.2590 -5.9675 4.2290 12 6 1.4398 -3.8315 5.4131 13 6 2.0549 -4.4839 6.6529 14 6 1.6567 -3.7052 7.8802 15 1 1.0281 -2.8321 7.7853 16 6 2.0906 -4.1103 9.1246 17 7 2.8516 -5.1766 9.2406 18 14 1.5964 -3.1456 10.6459 19 1 0.1165 -3.1367 10.7673 20 1 2.1876 -3.7828 11.8499 21 1 2.0920 -1.7505 10.5298 22 6 2.0399 -2.8850 -0.0001 23 6 1.5299 -2.1637 -1.2493 24 1 0.4400 -2.1637 -1.2494 25 6 2.0405 -2.8846 -2.4985 26 6 2.0400 -0.7212 -1.2493 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 1.6767 -0.2075 2.1392 31 1 3.1300 -0.7216 1.2490 32 1 0.4400 -2.1637 1.2492 33 1 2.8294 -2.5513 2.8831 34 1 1.6299 -6.4876 5.0102 35 1 0.2519 -5.9222 4.2704 36 1 0.3537 -3.8292 5.5049 37 1 1.7993 -2.8062 5.3259 38 1 3.1411 -4.4862 6.5612 39 1 1.6955 -5.5092 6.7402 40 1 3.1566 -5.4620 10.1161 41 1 3.1299 -2.8850 -0.0001 42 1 1.6762 -3.9125 -0.0003 43 1 3.1305 -2.8842 -2.4983 44 1 1.6775 -3.9123 -2.4988 45 1 1.6775 -2.3704 -3.3885 46 1 1.6770 -0.2074 -2.1395 47 1 3.1300 -0.7212 -1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424121411.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:45 Heat of formation + Delta-G solvation = -84.967145 kcal Electronic energy + Delta-G solvation = -22903.073900 eV Core-core repulsion = 19697.555333 eV Total energy + Delta-G solvation = -3205.518567 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.26640 -38.78404 -35.48678 -34.44171 -33.33468 -32.83852 -30.06192 -29.82831 -27.04100 -26.66787 -26.37914 -24.02643 -22.12418 -21.29067 -20.57117 -19.89105 -18.79390 -17.22649 -16.41211 -16.18056 -15.28472 -15.21087 -14.55656 -14.51119 -14.42935 -14.20441 -14.07251 -13.71592 -13.52205 -12.99025 -12.89832 -12.76575 -12.38101 -12.15307 -12.06728 -11.77057 -11.68939 -11.49360 -11.24469 -11.11769 -11.04272 -10.90371 -10.73800 -10.66041 -10.53144 -10.10176 -9.97680 -9.85218 -9.27750 -9.16614 -8.87652 -8.43668 -8.15424 -6.08357 -4.11579 2.99767 3.28359 3.31221 3.33247 3.35858 4.39306 4.40323 4.50127 4.61644 4.85031 4.87361 5.05951 5.10438 5.18243 5.21490 5.27531 5.28109 5.36161 5.45620 5.47224 5.48102 5.59916 5.61604 5.69325 5.74335 5.79322 5.79344 5.88187 5.99983 6.01746 6.04725 6.12853 6.23027 6.30437 6.34722 6.53599 6.67315 6.88757 7.46978 7.52820 7.62642 7.77583 7.88684 7.93247 8.31477 8.54489 8.94232 9.53247 11.02526 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025573 B = 0.003250 C = 0.003018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.643137 B = 8614.383487 C = 9275.351883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.086 4.086 3 H 0.072 0.928 4 C -0.123 4.123 5 C 0.145 3.855 6 N -0.732 5.732 7 C 0.526 3.474 8 O -0.539 6.539 9 C 0.074 3.926 10 H 0.095 0.905 11 N -0.831 5.831 12 C -0.137 4.137 13 C 0.025 3.975 14 C -0.525 4.525 15 H 0.054 0.946 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C -0.123 4.123 23 C -0.091 4.091 24 H 0.074 0.926 25 C -0.146 4.146 26 C -0.110 4.110 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.400 0.600 34 H 0.353 0.647 35 H 0.345 0.655 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.262 0.738 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.062 0.938 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.149 8.810 -20.703 22.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.105 4.105 3 H 0.091 0.909 4 C -0.161 4.161 5 C 0.041 3.959 6 N -0.384 5.384 7 C 0.313 3.687 8 O -0.415 6.415 9 C -0.041 4.041 10 H 0.113 0.887 11 N -0.363 5.363 12 C -0.177 4.177 13 C -0.013 4.013 14 C -0.563 4.563 15 H 0.072 0.928 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C -0.162 4.162 23 C -0.110 4.110 24 H 0.092 0.908 25 C -0.204 4.204 26 C -0.147 4.147 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.234 0.766 34 H 0.169 0.831 35 H 0.158 0.842 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.162 8.282 -21.673 23.202 hybrid contribution -0.117 0.983 2.133 2.351 sum -0.279 9.265 -19.540 21.627 Atomic orbital electron populations 1.21984 0.95162 1.02462 1.01613 1.21040 0.96107 0.99043 0.94348 0.90915 1.21852 1.01060 0.94705 0.98519 1.20936 1.00095 0.90648 0.84263 1.46092 1.29691 1.32830 1.29771 1.20875 0.83450 0.79378 0.84980 1.90623 1.25015 1.65031 1.60851 1.21478 1.00166 0.90373 0.92100 0.88704 1.58749 1.12108 1.13810 1.51589 1.22369 1.00959 0.99375 0.94949 1.19097 0.95938 0.95866 0.90356 1.21152 1.31481 1.12141 0.91510 0.92785 1.25010 0.95047 0.95102 0.99138 1.69940 1.34997 1.24151 1.24141 0.86642 0.78865 0.80157 0.82265 1.20228 1.21210 1.20210 1.21985 1.00758 0.99959 0.93491 1.21134 1.00805 0.94558 0.94543 0.90767 1.21815 1.01069 1.00381 0.97093 1.21659 1.00566 0.95185 0.97338 0.92628 0.92763 0.91835 0.91138 0.91374 0.89383 0.76633 0.83138 0.84186 0.92749 0.92581 0.96369 0.96404 0.92821 0.91930 0.91327 0.92804 0.92625 0.92827 0.91971 0.91916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.30 8.50 37.16 0.32 -0.98 16 2 C -0.09 -0.69 3.19 -90.62 -0.29 -0.98 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.12 -1.12 4.92 -26.73 -0.13 -1.26 16 5 C 0.15 1.67 2.18 -67.93 -0.15 1.52 16 6 N -0.73 -9.54 5.08 -53.81 -0.27 -9.82 16 7 C 0.53 8.77 7.04 -10.98 -0.08 8.70 16 8 O -0.54 -10.58 15.91 5.55 0.09 -10.49 16 9 C 0.07 1.27 3.21 -68.87 -0.22 1.05 16 10 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 11 N -0.83 -14.57 8.94 -5.65 -0.05 -14.62 16 12 C -0.14 -2.70 4.78 -26.73 -0.13 -2.83 16 13 C 0.02 0.60 4.74 -27.88 -0.13 0.47 16 14 C -0.52 -14.44 9.11 -34.44 -0.31 -14.76 16 15 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.10 13.29 55.43 0.74 -25.37 16 18 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 C -0.12 -1.34 4.77 -26.73 -0.13 -1.46 16 23 C -0.09 -0.81 2.45 -90.62 -0.22 -1.04 16 24 H 0.07 0.71 6.43 -51.93 -0.33 0.37 16 25 C -0.15 -1.18 9.19 37.16 0.34 -0.84 16 26 C -0.11 -0.84 4.73 -26.73 -0.13 -0.97 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.60 4.81 -51.93 -0.25 0.35 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 1.19 5.86 -51.93 -0.30 0.89 16 33 H 0.40 4.44 8.60 -40.82 -0.35 4.09 16 34 H 0.35 6.21 7.55 -39.29 -0.30 5.91 16 35 H 0.34 6.15 8.58 -39.29 -0.34 5.81 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 40 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -30.70 363.37 -8.94 -39.64 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -8.54 Total: 10.71 kcal Atomic # 6 Polarization: -10.46 SS G_CDS: -1.36 Total: -11.82 kcal Atomic # 7 Polarization: -50.22 SS G_CDS: 0.41 Total: -49.80 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.09 Total: -10.49 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.70 -8.94 -39.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424121411.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.331 kcal (2) G-P(sol) polarization free energy of solvation -30.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds