Wall clock time and date at job start Tue Mar 31 2020 06:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46652 * 2 1 4 4 C 1.53000 * 109.46886 * 119.99655 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 N 1.46500 * 109.47473 * 180.02562 * 5 4 2 7 7 C 1.34770 * 120.00256 * 205.00145 * 6 5 4 8 8 O 1.21283 * 120.00026 * 359.97438 * 7 6 5 9 9 C 1.50701 * 119.99922 * 180.02562 * 7 6 5 10 10 H 1.08994 * 109.47513 * 40.00059 * 9 7 6 11 11 N 1.46911 * 109.46849 * 159.99820 * 9 7 6 12 12 C 1.52996 * 109.46911 * 279.99599 * 9 7 6 13 13 C 1.53002 * 109.46987 * 175.00192 * 12 9 7 14 14 C 1.50696 * 109.47425 * 180.02562 * 13 12 9 15 15 H 1.08011 * 119.99648 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00411 * 180.02562 * 14 13 12 17 17 N 1.31510 * 119.99775 * 359.97438 * 16 14 13 18 18 Si 1.86804 * 119.99807 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.46932 * 90.00173 * 18 16 14 20 20 H 1.48499 * 109.46529 * 209.99779 * 18 16 14 21 21 H 1.48493 * 109.47479 * 329.99810 * 18 16 14 22 22 C 1.53006 * 109.47127 * 300.00449 * 5 4 2 23 23 C 1.52997 * 109.47164 * 59.99836 * 22 5 4 24 24 H 1.09002 * 109.47045 * 180.02562 * 23 22 5 25 25 C 1.53002 * 109.47092 * 60.00174 * 23 22 5 26 26 C 1.52996 * 109.47302 * 239.99872 * 2 1 3 27 27 H 1.09002 * 109.47508 * 299.99916 * 1 2 3 28 28 H 1.09000 * 109.47437 * 60.00514 * 1 2 3 29 29 H 1.09001 * 109.47109 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 31 31 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 32 32 H 1.08998 * 109.47533 * 59.99948 * 5 4 2 33 33 H 0.97005 * 119.99374 * 25.00210 * 6 5 4 34 34 H 1.00903 * 110.99769 * 60.00143 * 11 9 7 35 35 H 1.00897 * 110.99495 * 183.94823 * 11 9 7 36 36 H 1.08999 * 109.47527 * 295.00125 * 12 9 7 37 37 H 1.08997 * 109.47102 * 55.00390 * 12 9 7 38 38 H 1.09008 * 109.47072 * 300.00118 * 13 12 9 39 39 H 1.09006 * 109.47306 * 60.00159 * 13 12 9 40 40 H 0.97000 * 119.99957 * 179.97438 * 17 16 14 41 41 H 1.09001 * 109.47002 * 299.99574 * 22 5 4 42 42 H 1.09000 * 109.47050 * 179.97438 * 22 5 4 43 43 H 1.09002 * 109.47067 * 299.99853 * 25 23 22 44 44 H 1.09000 * 109.47312 * 59.99880 * 25 23 22 45 45 H 1.09004 * 109.46930 * 179.97438 * 25 23 22 46 46 H 1.08992 * 109.47554 * 299.99692 * 26 2 1 47 47 H 1.09004 * 109.47108 * 59.99942 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5699 -0.7207 1.2497 6 7 4.0583 -1.4117 2.4456 7 6 5.2800 -1.1257 2.9375 8 8 5.9753 -0.2965 2.3898 9 6 5.7825 -1.8371 4.1673 10 1 5.4948 -2.8874 4.1227 11 7 7.2466 -1.7327 4.2294 12 6 5.1720 -1.1935 5.4139 13 6 5.5825 -1.9918 6.6529 14 6 4.9807 -1.3583 7.8807 15 1 4.3671 -0.4744 7.7867 16 6 5.2141 -1.9064 9.1242 17 7 5.9616 -2.9824 9.2386 18 14 4.4686 -1.1207 10.6461 19 1 3.1343 -1.7174 10.9081 20 1 5.3560 -1.3611 11.8123 21 1 4.3231 0.3409 10.4279 22 6 4.0805 -1.4415 0.0004 23 6 3.5705 -0.7203 -1.2488 24 1 3.9339 -1.2342 -2.1388 25 6 4.0800 0.7224 -1.2485 26 6 2.0400 -0.7213 -1.2492 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.6765 -0.2074 2.1393 31 1 1.6767 -1.7489 1.2493 32 1 3.9330 0.3071 1.2498 33 1 3.5022 -2.0752 2.8833 34 1 7.5388 -0.7678 4.2716 35 1 7.6135 -2.2561 5.0101 36 1 5.5311 -0.1686 5.5066 37 1 4.0855 -1.1913 5.3265 38 1 5.2233 -3.0168 6.5602 39 1 6.6690 -1.9940 6.7403 40 1 6.1262 -3.3678 10.1134 41 1 3.7176 -2.4694 0.0002 42 1 5.1705 -1.4408 0.0004 43 1 3.7163 1.2360 -0.3585 44 1 5.1700 0.7228 -1.2483 45 1 3.7171 1.2361 -2.1388 46 1 1.6768 -1.7489 -1.2492 47 1 1.6767 -0.2074 -2.1392 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424121414.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:47 Heat of formation + Delta-G solvation = -84.904690 kcal Electronic energy + Delta-G solvation = -22907.434502 eV Core-core repulsion = 19701.918643 eV Total energy + Delta-G solvation = -3205.515859 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.26579 -38.77801 -35.48806 -34.42349 -33.35352 -32.83740 -30.07667 -29.83117 -26.99614 -26.65879 -26.37444 -24.01440 -22.09455 -21.54122 -20.43344 -19.76081 -18.83609 -17.28531 -16.41458 -16.19159 -15.32742 -15.11769 -14.55963 -14.51769 -14.43097 -14.20011 -14.06943 -13.65703 -13.52904 -13.00345 -12.94578 -12.75435 -12.36603 -12.14952 -12.00193 -11.80030 -11.75101 -11.53925 -11.20954 -11.07228 -11.01982 -10.92364 -10.74050 -10.65913 -10.36142 -10.27400 -9.97963 -9.85428 -9.26732 -9.16244 -8.85726 -8.44050 -8.15411 -6.08576 -4.11641 3.00060 3.26799 3.31068 3.33697 3.37216 4.39299 4.41193 4.48933 4.61812 4.84818 4.90894 5.05628 5.07982 5.17413 5.23346 5.27744 5.30010 5.36011 5.40357 5.46513 5.50516 5.59890 5.61975 5.69184 5.74183 5.79565 5.83155 5.87891 5.99344 6.01777 6.05404 6.15766 6.23822 6.30449 6.33395 6.53642 6.67517 6.88749 7.47006 7.52856 7.62584 7.77711 7.88619 7.93260 8.31456 8.54731 8.94366 9.53227 11.02347 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.022917 B = 0.003332 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1221.517409 B = 8400.648413 C = 9230.633227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 H 0.075 0.925 4 C -0.122 4.122 5 C 0.145 3.855 6 N -0.732 5.732 7 C 0.526 3.474 8 O -0.539 6.539 9 C 0.074 3.926 10 H 0.095 0.905 11 N -0.831 5.831 12 C -0.137 4.137 13 C 0.024 3.976 14 C -0.524 4.524 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.124 4.124 23 C -0.088 4.088 24 H 0.070 0.930 25 C -0.151 4.151 26 C -0.110 4.110 27 H 0.055 0.945 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.400 0.600 34 H 0.345 0.655 35 H 0.353 0.647 36 H 0.054 0.946 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.018 0.982 40 H 0.262 0.738 41 H 0.062 0.938 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.056 0.944 45 H 0.051 0.949 46 H 0.062 0.938 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.936 3.044 -20.347 22.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 H 0.093 0.907 4 C -0.160 4.160 5 C 0.041 3.959 6 N -0.384 5.384 7 C 0.313 3.687 8 O -0.414 6.414 9 C -0.041 4.041 10 H 0.113 0.887 11 N -0.363 5.363 12 C -0.177 4.177 13 C -0.013 4.013 14 C -0.562 4.562 15 H 0.073 0.927 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.720 3.280 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.163 4.163 23 C -0.107 4.107 24 H 0.088 0.912 25 C -0.208 4.208 26 C -0.147 4.147 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.106 0.894 33 H 0.234 0.766 34 H 0.158 0.842 35 H 0.169 0.831 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.081 0.919 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -8.336 3.169 -21.319 23.109 hybrid contribution -0.873 0.407 2.129 2.337 sum -9.209 3.576 -19.190 21.583 Atomic orbital electron populations 1.21825 0.95056 1.01845 1.01698 1.21114 0.95431 1.00028 0.94333 0.90661 1.21882 0.94225 1.01482 0.98459 1.20935 0.93230 0.97550 0.84216 1.46093 1.18359 1.44179 1.29771 1.20868 0.80585 0.82267 0.84981 1.90622 1.56036 1.33974 1.60812 1.21479 0.90394 1.00133 0.92120 0.88709 1.58750 1.07244 1.18640 1.51623 1.22368 1.00157 1.00184 0.94945 1.19104 0.96765 0.95046 0.90384 1.21187 1.31290 1.12189 0.91525 0.92738 1.25015 0.95178 0.94983 0.99154 1.69948 1.38070 1.21100 1.24093 0.86583 0.79064 0.79739 0.82578 1.20615 1.21150 1.19881 1.21955 1.01472 0.99079 0.93795 1.21072 0.95191 0.96635 0.97820 0.91204 1.21939 1.01338 0.95933 1.01637 1.21664 0.95040 1.00587 0.97434 0.92584 0.92710 0.92679 0.91187 0.91376 0.89382 0.76640 0.84185 0.83144 0.92748 0.92583 0.96358 0.96408 0.92883 0.91936 0.91282 0.92087 0.92499 0.93003 0.91920 0.91974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.19 37.16 0.34 -0.69 16 2 C -0.09 -0.72 2.45 -90.62 -0.22 -0.94 16 3 H 0.08 0.64 6.43 -51.93 -0.33 0.30 16 4 C -0.12 -1.12 4.67 -26.73 -0.12 -1.25 16 5 C 0.15 1.67 2.18 -67.93 -0.15 1.52 16 6 N -0.73 -9.54 5.08 -53.81 -0.27 -9.81 16 7 C 0.53 8.76 7.04 -10.99 -0.08 8.68 16 8 O -0.54 -10.53 15.91 5.55 0.09 -10.44 16 9 C 0.07 1.27 3.21 -68.86 -0.22 1.05 16 10 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 11 N -0.83 -14.57 8.94 -5.65 -0.05 -14.62 16 12 C -0.14 -2.70 4.78 -26.73 -0.13 -2.83 16 13 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 14 C -0.52 -14.41 9.11 -34.44 -0.31 -14.72 16 15 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.08 13.29 55.43 0.74 -25.35 16 18 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 22 C -0.12 -1.35 5.02 -26.73 -0.13 -1.48 16 23 C -0.09 -0.79 3.20 -90.60 -0.29 -1.07 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 25 C -0.15 -1.41 8.50 37.16 0.32 -1.09 16 26 C -0.11 -0.84 4.74 -26.71 -0.13 -0.97 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 1.19 5.86 -51.93 -0.30 0.89 16 33 H 0.40 4.45 8.60 -40.82 -0.35 4.10 16 34 H 0.34 6.14 8.58 -39.29 -0.34 5.81 16 35 H 0.35 6.20 7.55 -39.29 -0.30 5.91 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 39 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 40 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.06 0.60 4.81 -51.93 -0.25 0.35 16 44 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 363.38 15.07 5.48 5.48 Total: -1.00 -30.67 363.38 -8.94 -39.60 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -8.54 Total: 10.65 kcal Atomic # 6 Polarization: -10.44 SS G_CDS: -1.36 Total: -11.79 kcal Atomic # 7 Polarization: -50.19 SS G_CDS: 0.41 Total: -49.77 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.09 Total: -10.44 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.67 -8.94 -39.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424121414.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.300 kcal (2) G-P(sol) polarization free energy of solvation -30.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds