Wall clock time and date at job start Tue Mar 31 2020 06:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09008 * 109.36662 * 2 1 4 4 C 1.50880 * 109.36949 * 240.25294 * 2 1 3 5 5 C 1.52564 * 109.35886 * 148.04866 * 4 2 1 6 6 C 1.47094 * 114.32750 * 85.01286 * 5 4 2 7 7 C 1.54860 * 110.32237 * 297.20152 * 6 5 4 8 8 H 1.08997 * 109.42752 * 311.23219 * 7 6 5 9 9 C 1.52998 * 109.45038 * 191.30192 * 7 6 5 10 10 N 1.44577 * 109.60231 * 71.26463 * 7 6 5 11 11 C 1.34777 * 118.64788 * 89.25168 * 10 7 6 12 12 O 1.21283 * 119.99562 * 4.96104 * 11 10 7 13 13 C 1.50702 * 120.00146 * 184.96091 * 11 10 7 14 14 H 1.08996 * 109.46682 * 36.70774 * 13 11 10 15 15 N 1.46899 * 109.46702 * 156.69946 * 13 11 10 16 16 C 1.52988 * 109.47085 * 276.69932 * 13 11 10 17 17 C 1.53006 * 109.47184 * 175.00051 * 16 13 11 18 18 C 1.50697 * 109.47579 * 180.02562 * 17 16 13 19 19 H 1.07998 * 119.99799 * 359.97438 * 18 17 16 20 20 C 1.37870 * 120.00161 * 180.02562 * 18 17 16 21 21 N 1.31512 * 120.00038 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00093 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47377 * 180.02562 * 22 20 18 24 24 H 1.48505 * 109.46938 * 299.99737 * 22 20 18 25 25 H 1.48497 * 109.47199 * 59.99879 * 22 20 18 26 26 C 1.47603 * 122.71195 * 269.53083 * 10 7 6 27 27 H 1.08998 * 109.47175 * 179.74533 * 1 2 3 28 28 H 1.09001 * 109.47177 * 299.75129 * 1 2 3 29 29 H 1.08998 * 109.46789 * 59.74606 * 1 2 3 30 30 H 1.08998 * 109.48812 * 28.08608 * 4 2 1 31 31 H 1.08995 * 109.50904 * 268.02617 * 4 2 1 32 32 H 1.08999 * 108.51530 * 323.75889 * 5 4 2 33 33 H 1.08998 * 108.39064 * 206.17462 * 5 4 2 34 34 H 1.08994 * 109.33351 * 176.93324 * 6 5 4 35 35 H 1.09004 * 109.32921 * 57.45702 * 6 5 4 36 36 H 1.09005 * 109.47274 * 317.67279 * 9 7 6 37 37 H 1.09001 * 109.47244 * 77.67135 * 9 7 6 38 38 H 1.09003 * 109.47467 * 197.67143 * 9 7 6 39 39 H 1.00894 * 111.00312 * 60.00496 * 15 13 11 40 40 H 1.00905 * 110.99784 * 183.95657 * 15 13 11 41 41 H 1.09003 * 109.47466 * 55.00299 * 16 13 11 42 42 H 1.08999 * 109.47957 * 295.00158 * 16 13 11 43 43 H 1.09003 * 109.46716 * 59.99790 * 17 16 13 44 44 H 1.09007 * 109.46662 * 300.00512 * 17 16 13 45 45 H 0.96998 * 120.00386 * 180.02562 * 21 20 18 46 46 H 1.08996 * 108.94860 * 162.55976 * 26 10 7 47 47 H 1.08999 * 108.94882 * 281.18699 * 26 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8915 1.0284 0.0000 4 6 2.0304 -0.7063 -1.2358 5 6 3.3503 -0.0807 -1.6763 6 6 4.5356 -0.6250 -0.9963 7 6 4.4633 -0.3371 0.5236 8 1 4.2227 0.7141 0.6824 9 6 5.8151 -0.6531 1.1668 10 7 3.4395 -1.1616 1.1252 11 6 3.7786 -2.3846 1.5791 12 8 4.9387 -2.7378 1.5608 13 6 2.7164 -3.3129 2.1091 14 1 1.8065 -3.1976 1.5203 15 7 3.1880 -4.7010 2.0149 16 6 2.4244 -2.9716 3.5716 17 6 1.2607 -3.8292 4.0729 18 6 0.9726 -3.4927 5.5133 19 1 1.5609 -2.7424 6.0206 20 6 -0.0414 -4.1432 6.1837 21 7 -0.7574 -5.0572 5.5661 22 14 -0.3980 -3.7265 7.9694 23 1 -1.5267 -4.5597 8.4563 24 1 0.8082 -3.9989 8.7917 25 1 -0.7586 -2.2903 8.0800 26 6 2.0367 -0.7219 1.2576 27 1 -0.3633 -1.0276 -0.0046 28 1 -0.3633 0.5100 0.8922 29 1 -0.3633 0.5178 -0.8877 30 1 1.2958 -0.6056 -2.0347 31 1 2.1845 -1.7623 -1.0143 32 1 3.3051 0.9919 -1.4875 33 1 3.4642 -0.2375 -2.7489 34 1 5.4324 -0.1627 -1.4089 35 1 4.5813 -1.7020 -1.1577 36 1 6.2047 -1.5841 0.7550 37 1 6.5145 0.1568 0.9591 38 1 5.6893 -0.7570 2.2445 39 1 4.0313 -4.8337 2.5527 40 1 2.4692 -5.3474 2.3041 41 1 2.1600 -1.9173 3.6529 42 1 3.3096 -3.1717 4.1753 43 1 1.5251 -4.8836 3.9916 44 1 0.3754 -3.6290 3.4692 45 1 -1.4710 -5.5147 6.0377 46 1 1.4086 -1.5932 1.4427 47 1 1.9571 -0.0435 2.1071 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424128526.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:30 Heat of formation + Delta-G solvation = -51.839976 kcal Electronic energy + Delta-G solvation = -24063.134920 eV Core-core repulsion = 20859.052855 eV Total energy + Delta-G solvation = -3204.082065 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.70544 -37.88471 -35.86772 -34.31648 -33.78974 -32.81404 -30.17717 -29.87682 -26.66051 -26.45006 -25.95485 -24.08938 -22.75179 -21.25008 -20.34073 -20.14008 -18.38066 -17.08666 -16.43730 -16.23717 -15.55720 -14.85840 -14.77995 -14.56156 -14.34886 -14.11217 -13.84947 -13.38670 -13.02949 -12.88455 -12.77465 -12.39906 -12.37225 -12.28896 -12.11327 -11.91014 -11.60246 -11.53646 -11.18691 -11.00120 -10.89160 -10.81739 -10.67071 -10.64277 -10.59120 -10.32849 -9.96038 -9.69182 -9.26121 -8.81501 -8.44338 -8.42658 -8.09396 -6.08266 -4.11396 2.97660 3.15121 3.28381 3.33309 3.35824 4.39328 4.47432 4.58381 4.69832 4.79920 4.97740 5.02372 5.16808 5.21474 5.27979 5.35276 5.41737 5.46449 5.53255 5.62270 5.64885 5.70278 5.72984 5.81386 5.85660 5.92713 5.96057 5.98672 6.11652 6.15077 6.17798 6.27032 6.30529 6.34425 6.49839 6.56967 6.88526 6.92983 7.43632 7.52173 7.61295 7.68372 7.88691 7.93135 8.31710 8.56349 8.94269 9.53498 11.02571 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019932 B = 0.004536 C = 0.004130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1404.416488 B = 6170.915981 C = 6778.428564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.102 4.102 3 H 0.072 0.928 4 C -0.113 4.113 5 C -0.116 4.116 6 C -0.130 4.130 7 C 0.149 3.851 8 H 0.073 0.927 9 C -0.146 4.146 10 N -0.605 5.605 11 C 0.525 3.475 12 O -0.532 6.532 13 C 0.070 3.930 14 H 0.095 0.905 15 N -0.831 5.831 16 C -0.138 4.138 17 C 0.026 3.974 18 C -0.524 4.524 19 H 0.054 0.946 20 C 0.060 3.940 21 N -0.893 5.893 22 Si 0.892 3.108 23 H -0.287 1.287 24 H -0.277 1.277 25 H -0.277 1.277 26 C 0.106 3.894 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.087 0.913 37 H 0.039 0.961 38 H 0.056 0.944 39 H 0.345 0.655 40 H 0.353 0.647 41 H 0.055 0.945 42 H 0.054 0.946 43 H 0.017 0.983 44 H 0.017 0.983 45 H 0.262 0.738 46 H 0.093 0.907 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.492 11.057 -13.759 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.121 4.121 3 H 0.090 0.910 4 C -0.151 4.151 5 C -0.153 4.153 6 C -0.169 4.169 7 C 0.045 3.955 8 H 0.091 0.909 9 C -0.203 4.203 10 N -0.338 5.338 11 C 0.313 3.687 12 O -0.408 6.408 13 C -0.044 4.044 14 H 0.113 0.887 15 N -0.363 5.363 16 C -0.178 4.178 17 C -0.011 4.011 18 C -0.562 4.562 19 H 0.072 0.928 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.720 3.280 23 H -0.212 1.212 24 H -0.202 1.202 25 H -0.202 1.202 26 C -0.017 4.017 27 H 0.080 0.920 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.082 0.918 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.058 0.942 38 H 0.075 0.925 39 H 0.158 0.842 40 H 0.168 0.832 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.035 0.965 44 H 0.036 0.964 45 H 0.072 0.928 46 H 0.111 0.889 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.045 10.899 -14.527 19.141 hybrid contribution -0.608 0.304 2.083 2.191 sum 5.437 11.203 -12.445 17.605 Atomic orbital electron populations 1.21860 0.94056 1.02583 1.01983 1.21290 0.96313 0.99701 0.94837 0.90992 1.21179 0.96396 1.00657 0.96840 1.20442 0.94874 1.00130 0.99877 1.21272 0.97990 1.02181 0.95425 1.21008 0.88481 0.94116 0.91911 0.90857 1.22268 0.94711 1.01951 1.01374 1.47755 1.09052 1.16399 1.60622 1.20852 0.90072 0.81464 0.76277 1.90616 1.19776 1.74939 1.55467 1.21589 0.95609 0.89491 0.97762 0.88719 1.58781 1.10247 1.02931 1.64337 1.22382 1.01446 1.01549 0.92389 1.19085 0.91549 0.94444 0.96043 1.21138 1.16513 1.21815 0.96722 0.92823 1.24993 0.96018 0.94987 0.98187 1.69935 1.21131 1.25260 1.36885 0.86660 0.77877 0.78392 0.85108 1.21209 1.20241 1.20221 1.22147 0.81439 1.00790 0.97281 0.92043 0.92209 0.92403 0.91820 0.91426 0.92507 0.92637 0.91297 0.91529 0.89447 0.94204 0.92524 0.84189 0.83220 0.92589 0.92731 0.96460 0.96441 0.92840 0.88887 0.91625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 8.87 37.16 0.33 -1.02 16 2 C -0.10 -1.01 2.54 -91.37 -0.23 -1.24 16 3 H 0.07 0.66 7.32 -51.92 -0.38 0.28 16 4 C -0.11 -1.13 5.02 -28.02 -0.14 -1.27 16 5 C -0.12 -1.09 5.15 -29.79 -0.15 -1.25 16 6 C -0.13 -1.42 4.99 -28.59 -0.14 -1.56 16 7 C 0.15 1.82 2.60 -67.98 -0.18 1.64 16 8 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 9 C -0.15 -1.96 7.75 37.16 0.29 -1.67 16 10 N -0.60 -8.30 2.21 -165.13 -0.37 -8.67 16 11 C 0.52 8.78 6.50 -10.98 -0.07 8.71 16 12 O -0.53 -10.00 12.33 5.56 0.07 -9.93 16 13 C 0.07 1.22 2.35 -68.87 -0.16 1.05 16 14 H 0.10 1.58 6.26 -51.93 -0.33 1.25 16 15 N -0.83 -14.51 8.97 -5.66 -0.05 -14.56 16 16 C -0.14 -2.73 4.59 -26.73 -0.12 -2.86 16 17 C 0.03 0.63 4.74 -27.88 -0.13 0.49 16 18 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 19 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -25.90 13.29 55.43 0.74 -25.17 16 22 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 C 0.11 1.30 4.54 -3.12 -0.01 1.28 16 27 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 30 H 0.06 0.57 7.74 -51.93 -0.40 0.17 16 31 H 0.07 0.82 7.48 -51.93 -0.39 0.43 16 32 H 0.06 0.49 7.36 -51.93 -0.38 0.11 16 33 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.66 8.11 -51.93 -0.42 0.24 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.09 1.34 6.19 -51.93 -0.32 1.02 16 37 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.87 7.44 -51.93 -0.39 0.48 16 39 H 0.34 6.11 8.56 -39.29 -0.34 5.77 16 40 H 0.35 6.18 7.55 -39.29 -0.30 5.88 16 41 H 0.06 1.08 7.28 -51.93 -0.38 0.70 16 42 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.09 1.24 4.97 -51.93 -0.26 0.98 16 47 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 352.33 15.07 5.31 5.31 Total: -1.00 -29.55 352.33 -8.86 -38.41 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -8.39 Total: 9.16 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: -1.14 Total: -10.76 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: 0.32 Total: -48.39 kcal Atomic # 8 Polarization: -10.00 SS G_CDS: 0.07 Total: -9.93 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -29.55 -8.86 -38.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424128526.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.428 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds