Wall clock time and date at job start Tue Mar 31 2020 06:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08995 * 109.32938 * 2 1 4 4 C 1.47094 * 109.32933 * 240.35207 * 2 1 3 5 5 C 1.52569 * 114.32890 * 177.10893 * 4 2 1 6 6 C 1.50884 * 109.37801 * 84.99906 * 5 4 2 7 7 C 1.53948 * 110.12512 * 268.15594 * 6 5 4 8 8 H 1.08998 * 108.85487 * 279.88095 * 7 6 5 9 9 C 1.53001 * 108.97046 * 161.20740 * 7 6 5 10 10 N 1.47600 * 112.13184 * 40.50751 * 7 6 5 11 11 C 1.34777 * 118.64182 * 222.15729 * 10 7 6 12 12 O 1.21286 * 119.99699 * 0.02562 * 11 10 7 13 13 C 1.50697 * 120.00335 * 180.02562 * 11 10 7 14 14 H 1.09005 * 109.46920 * 319.99654 * 13 11 10 15 15 N 1.46899 * 109.47181 * 200.00140 * 13 11 10 16 16 C 1.52992 * 109.47381 * 79.99794 * 13 11 10 17 17 C 1.53008 * 109.47245 * 185.00327 * 16 13 11 18 18 C 1.50694 * 109.47026 * 180.02562 * 17 16 13 19 19 H 1.08005 * 120.00200 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99828 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00056 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99950 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47100 * 359.97438 * 22 20 18 24 24 H 1.48502 * 109.46936 * 120.00132 * 22 20 18 25 25 H 1.48496 * 109.47122 * 240.00008 * 22 20 18 26 26 C 1.44580 * 122.71735 * 42.18124 * 10 7 6 27 27 H 1.09006 * 109.47132 * 179.64760 * 1 2 3 28 28 H 1.08996 * 109.47470 * 299.64672 * 1 2 3 29 29 H 1.08999 * 109.47102 * 59.64772 * 1 2 3 30 30 H 1.09001 * 108.51386 * 55.85075 * 4 2 1 31 31 H 1.09006 * 108.51325 * 298.36218 * 4 2 1 32 32 H 1.09002 * 109.49171 * 204.98076 * 5 4 2 33 33 H 1.09002 * 109.49091 * 325.02542 * 5 4 2 34 34 H 1.09005 * 109.36360 * 28.32171 * 6 5 4 35 35 H 1.08995 * 109.36459 * 147.93209 * 6 5 4 36 36 H 1.09006 * 109.47075 * 297.35907 * 9 7 6 37 37 H 1.08993 * 109.47648 * 57.36335 * 9 7 6 38 38 H 1.09004 * 109.46901 * 177.36841 * 9 7 6 39 39 H 1.00902 * 111.00335 * 299.99575 * 15 13 11 40 40 H 1.00904 * 111.00114 * 63.94854 * 15 13 11 41 41 H 1.08996 * 109.47409 * 305.00127 * 16 13 11 42 42 H 1.09001 * 109.46968 * 65.00300 * 16 13 11 43 43 H 1.08996 * 109.46754 * 300.00201 * 17 16 13 44 44 H 1.09001 * 109.47159 * 60.00090 * 17 16 13 45 45 H 0.96994 * 120.00205 * 180.02562 * 21 20 18 46 46 H 1.08999 * 109.44818 * 149.20812 * 26 10 7 47 47 H 1.08999 * 109.42643 * 29.27701 * 26 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8907 1.0285 0.0000 4 6 2.0168 -0.6866 -1.2063 5 6 3.5350 -0.6917 -1.3571 6 6 4.1114 -1.8491 -0.5793 7 6 4.4753 -1.3996 0.8474 8 1 5.4341 -0.8819 0.8199 9 6 4.6040 -2.6352 1.7406 10 7 3.4592 -0.4964 1.4221 11 6 3.8722 0.5827 2.1158 12 8 5.0579 0.7955 2.2568 13 6 2.8610 1.5250 2.7162 14 1 2.0357 1.6651 2.0181 15 7 3.4988 2.8203 2.9867 16 6 2.3284 0.9358 4.0239 17 6 1.2131 1.8301 4.5693 18 6 0.6890 1.2501 5.8576 19 1 1.1090 0.3349 6.2482 20 6 -0.3268 1.8878 6.5378 21 7 -0.8379 3.0024 6.0626 22 14 -0.9760 1.1692 8.1352 23 1 -0.2384 -0.0801 8.4518 24 1 -0.7837 2.1502 9.2334 25 1 -2.4224 0.8662 7.9898 26 6 2.0389 -0.7218 1.2720 27 1 -0.3634 -1.0277 -0.0063 28 1 -0.3634 0.5083 0.8931 29 1 -0.3633 0.5193 -0.8868 30 1 1.5839 -0.1998 -2.0802 31 1 1.6680 -1.7191 -1.1815 32 1 3.7956 -0.7956 -2.4104 33 1 3.9419 0.2435 -0.9723 34 1 3.3761 -2.6521 -0.5281 35 1 5.0068 -2.2130 -1.0833 36 1 3.6433 -3.1476 1.7925 37 1 5.3528 -3.3086 1.3237 38 1 4.9073 -2.3297 2.7420 39 1 4.2678 2.7171 3.6319 40 1 3.8018 3.2600 2.1305 41 1 1.9348 -0.0635 3.8385 42 1 3.1371 0.8784 4.7525 43 1 1.6068 2.8294 4.7547 44 1 0.4044 1.8875 3.8407 45 1 -1.5522 3.4513 6.5412 46 1 1.5154 -0.3317 2.1448 47 1 1.8490 -1.7914 1.1829 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424128527.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:32 Heat of formation + Delta-G solvation = -64.485268 kcal Electronic energy + Delta-G solvation = -24111.819349 eV Core-core repulsion = 20907.188943 eV Total energy + Delta-G solvation = -3204.630406 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.68559 -38.04942 -35.61800 -34.62022 -33.64564 -32.74518 -30.29308 -30.06935 -26.51866 -26.46857 -26.15953 -23.91950 -22.72293 -21.02820 -20.54011 -19.80665 -18.59050 -17.26491 -16.65173 -16.06393 -15.53556 -15.32191 -14.73778 -14.59571 -14.31308 -14.20461 -13.77332 -13.60452 -13.16013 -12.97807 -12.66167 -12.41357 -12.34756 -12.14479 -12.00232 -11.79921 -11.57349 -11.48386 -11.34698 -10.93475 -10.87301 -10.81714 -10.58869 -10.56899 -10.49589 -10.37539 -9.96078 -9.75165 -9.34228 -8.97675 -8.53149 -8.32541 -8.15940 -5.93393 -3.95350 2.81116 3.09952 3.33948 3.41765 3.45546 4.37939 4.50551 4.64509 4.70739 4.79962 4.85923 4.89175 5.06996 5.17216 5.28973 5.35432 5.37810 5.42375 5.50287 5.53291 5.59871 5.63219 5.70076 5.75497 5.78592 5.82018 5.86440 5.93757 6.03748 6.04551 6.11136 6.19086 6.26193 6.34014 6.44256 6.67379 6.75086 7.09761 7.40090 7.59378 7.77022 7.83223 7.96968 8.14006 8.35658 8.49266 9.12833 9.67894 11.17501 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019474 B = 0.004593 C = 0.004369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.500013 B = 6094.292123 C = 6407.190147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.109 4.109 3 H 0.071 0.929 4 C -0.111 4.111 5 C -0.116 4.116 6 C -0.124 4.124 7 C 0.134 3.866 8 H 0.093 0.907 9 C -0.161 4.161 10 N -0.597 5.597 11 C 0.481 3.519 12 O -0.557 6.557 13 C 0.076 3.924 14 H 0.099 0.901 15 N -0.807 5.807 16 C -0.097 4.097 17 C 0.032 3.968 18 C -0.521 4.521 19 H 0.052 0.948 20 C 0.059 3.941 21 N -0.892 5.892 22 Si 0.887 3.113 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.285 1.285 26 C 0.104 3.896 27 H 0.055 0.945 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.056 0.944 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.347 0.653 40 H 0.332 0.668 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.035 0.965 44 H 0.013 0.987 45 H 0.259 0.741 46 H 0.098 0.902 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.675 -9.598 -16.293 20.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.129 4.129 3 H 0.090 0.910 4 C -0.148 4.148 5 C -0.154 4.154 6 C -0.162 4.162 7 C 0.031 3.969 8 H 0.111 0.889 9 C -0.219 4.219 10 N -0.330 5.330 11 C 0.269 3.731 12 O -0.435 6.435 13 C -0.040 4.040 14 H 0.117 0.883 15 N -0.335 5.335 16 C -0.135 4.135 17 C -0.005 4.005 18 C -0.559 4.559 19 H 0.070 0.930 20 C -0.142 4.142 21 N -0.531 5.531 22 Si 0.715 3.285 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.020 4.020 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.161 0.839 40 H 0.144 0.856 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.031 0.969 45 H 0.068 0.932 46 H 0.116 0.884 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.457 -9.149 -15.872 19.425 hybrid contribution 0.377 -0.912 0.391 1.061 sum 6.834 -10.061 -15.482 19.688 Atomic orbital electron populations 1.21824 0.94020 1.02067 1.02690 1.20838 0.96398 1.00343 0.95312 0.91035 1.20507 0.95403 1.00986 0.97937 1.21047 0.95729 0.99095 0.99484 1.21795 1.01465 0.98435 0.94501 1.21399 0.92651 0.90724 0.92153 0.88939 1.22163 1.01851 0.97423 1.00453 1.47850 1.06430 1.25528 1.53147 1.22799 0.91217 0.81880 0.77234 1.90615 1.18341 1.74477 1.60059 1.21897 0.94650 0.87682 0.99727 0.88329 1.59018 1.37101 1.20135 1.17235 1.21705 1.00401 0.99242 0.92155 1.19010 0.91178 0.95432 0.94866 1.21312 1.18208 1.08969 1.07447 0.92985 1.24977 0.96752 0.94956 0.97554 1.69981 1.26699 1.17299 1.39164 0.86619 0.78658 0.79155 0.84049 1.19871 1.21061 1.21115 1.21897 0.80462 1.00952 0.98686 0.92594 0.91380 0.92560 0.92474 0.92268 0.92082 0.91757 0.91463 0.91088 0.92446 0.91896 0.92217 0.83937 0.85598 0.92704 0.92901 0.94680 0.96890 0.93175 0.88409 0.90648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.09 37.15 0.34 -1.18 16 2 C -0.11 -1.16 2.28 -92.48 -0.21 -1.38 16 3 H 0.07 0.86 7.34 -51.93 -0.38 0.47 16 4 C -0.11 -1.02 4.38 -29.79 -0.13 -1.15 16 5 C -0.12 -1.09 5.50 -28.01 -0.15 -1.24 16 6 C -0.12 -1.12 5.08 -27.30 -0.14 -1.26 16 7 C 0.13 1.57 2.62 -66.83 -0.17 1.39 16 8 H 0.09 1.26 6.96 -51.93 -0.36 0.90 16 9 C -0.16 -1.74 9.34 37.16 0.35 -1.40 16 10 N -0.60 -7.93 1.83 -165.05 -0.30 -8.24 16 11 C 0.48 7.85 6.87 -10.99 -0.08 7.77 16 12 O -0.56 -10.48 15.53 5.55 0.09 -10.39 16 13 C 0.08 1.31 2.30 -68.87 -0.16 1.15 16 14 H 0.10 1.63 6.06 -51.93 -0.31 1.31 16 15 N -0.81 -13.97 8.44 -5.66 -0.05 -14.02 16 16 C -0.10 -1.97 4.42 -26.73 -0.12 -2.09 16 17 C 0.03 0.82 4.86 -27.88 -0.14 0.68 16 18 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 19 H 0.05 1.43 7.74 -52.48 -0.41 1.03 16 20 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 21 N -0.89 -26.73 13.29 55.43 0.74 -26.00 16 22 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 26 C 0.10 1.25 4.25 -4.09 -0.02 1.23 16 27 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.50 8.11 -51.93 -0.42 0.07 16 31 H 0.06 0.51 7.36 -51.93 -0.38 0.12 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.73 7.48 -51.93 -0.39 0.35 16 34 H 0.07 0.57 7.17 -51.93 -0.37 0.19 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.06 0.59 7.88 -51.93 -0.41 0.18 16 37 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.35 6.11 8.58 -39.29 -0.34 5.77 16 40 H 0.33 5.04 9.06 -39.29 -0.36 4.69 16 41 H 0.05 1.06 6.36 -51.93 -0.33 0.72 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 44 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 46 H 0.10 1.36 4.55 -51.93 -0.24 1.12 16 47 H 0.08 0.80 7.80 -51.93 -0.41 0.40 16 LS Contribution 357.31 15.07 5.38 5.38 Total: -1.00 -31.16 357.31 -8.65 -39.81 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -8.44 Total: 7.64 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -1.04 Total: -10.83 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.39 Total: -48.25 kcal Atomic # 8 Polarization: -10.48 SS G_CDS: 0.09 Total: -10.39 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.16 -8.65 -39.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424128527.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.676 kcal (2) G-P(sol) polarization free energy of solvation -31.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds