Wall clock time and date at job start Tue Mar 31 2020 06:20:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 108.46015 * 2 1 4 4 C 1.52532 * 108.39870 * 242.35481 * 2 1 3 5 5 C 1.50128 * 105.41250 * 149.43947 * 4 2 1 6 6 C 1.54839 * 110.82222 * 97.68422 * 5 4 2 7 7 C 1.54904 * 110.14032 * 321.13742 * 6 5 4 8 8 H 1.08998 * 108.16199 * 80.14292 * 7 6 5 9 9 C 1.52998 * 108.15970 * 196.92418 * 7 6 5 10 10 N 1.43442 * 116.07350 * 318.64202 * 7 6 5 11 11 C 1.34774 * 120.53260 * 271.54360 * 10 7 6 12 12 O 1.21290 * 119.99959 * 5.57515 * 11 10 7 13 13 C 1.50704 * 120.00299 * 185.57174 * 11 10 7 14 14 H 1.09002 * 109.46655 * 320.00416 * 13 11 10 15 15 N 1.46896 * 109.47393 * 200.00287 * 13 11 10 16 16 C 1.53002 * 109.46851 * 80.00015 * 13 11 10 17 17 C 1.52999 * 109.46986 * 185.00148 * 16 13 11 18 18 C 1.50699 * 109.47144 * 179.97438 * 17 16 13 19 19 H 1.08002 * 119.99990 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99814 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00485 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99673 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46937 * 60.00655 * 22 20 18 24 24 H 1.48507 * 109.46827 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47397 * 300.00316 * 22 20 18 26 26 C 1.46231 * 108.52337 * 117.71683 * 2 1 3 27 27 H 1.09002 * 109.46891 * 302.28200 * 1 2 3 28 28 H 1.09000 * 109.47444 * 62.28933 * 1 2 3 29 29 H 1.09003 * 109.46684 * 182.28569 * 1 2 3 30 30 H 1.08996 * 110.25249 * 268.40875 * 4 2 1 31 31 H 1.09005 * 110.25123 * 30.32419 * 4 2 1 32 32 H 1.09003 * 109.20332 * 337.34250 * 5 4 2 33 33 H 1.09003 * 109.20907 * 218.03458 * 5 4 2 34 34 H 1.09002 * 109.35834 * 200.93010 * 6 5 4 35 35 H 1.09003 * 109.35660 * 81.33813 * 6 5 4 36 36 H 1.08998 * 109.47140 * 49.00360 * 9 7 6 37 37 H 1.09003 * 109.47076 * 168.99621 * 9 7 6 38 38 H 1.08996 * 109.47480 * 288.99770 * 9 7 6 39 39 H 1.00898 * 110.99919 * 300.00243 * 15 13 11 40 40 H 1.00896 * 110.99941 * 63.94981 * 15 13 11 41 41 H 1.08995 * 109.47288 * 305.00307 * 16 13 11 42 42 H 1.09001 * 109.46803 * 65.00101 * 16 13 11 43 43 H 1.08995 * 109.47237 * 300.00190 * 17 16 13 44 44 H 1.09004 * 109.47010 * 59.99974 * 17 16 13 45 45 H 0.96996 * 120.00447 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.85062 * 59.98688 * 26 2 1 47 47 H 1.08997 * 109.90175 * 299.02729 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8751 1.0338 0.0000 4 6 2.0115 -0.6716 -1.2821 5 6 3.3199 -0.0129 -1.6105 6 6 4.5085 -0.8704 -1.1110 7 6 4.1726 -1.4975 0.2650 8 1 3.5471 -2.3738 0.0955 9 6 5.4798 -1.9655 0.9076 10 7 3.4960 -0.6440 1.1985 11 6 4.1965 0.1456 2.0365 12 8 5.4034 0.2148 1.9377 13 6 3.4804 0.9426 3.0963 14 1 2.5557 1.3466 2.6841 15 7 4.3403 2.0461 3.5439 16 6 3.1554 0.0350 4.2844 17 6 2.3202 0.8105 5.3051 18 6 1.9996 -0.0836 6.4751 19 1 2.3562 -1.1029 6.4894 20 6 1.2519 0.4000 7.5277 21 7 0.8181 1.6414 7.5105 22 14 0.8551 -0.7081 8.9782 23 1 2.1179 -1.1623 9.6141 24 1 0.0444 0.0447 9.9689 25 1 0.0872 -1.8875 8.5047 26 6 1.9946 -0.6449 1.2275 27 1 -0.3633 0.5489 0.8688 28 1 -0.3634 0.4779 -0.9098 29 1 -0.3633 -1.0269 0.0410 30 1 2.1575 -1.7390 -1.1170 31 1 1.2929 -0.5096 -2.0857 32 1 3.3583 0.9661 -1.1327 33 1 3.3972 0.1127 -2.6905 34 1 5.3931 -0.2408 -1.0150 35 1 4.7088 -1.6642 -1.8306 36 1 6.2161 -1.1633 0.8593 37 1 5.2984 -2.2298 1.9494 38 1 5.8564 -2.8370 0.3721 39 1 5.2046 1.6972 3.9303 40 1 4.5166 2.6952 2.7917 41 1 2.5920 -0.8309 3.9367 42 1 4.0823 -0.2982 4.7512 43 1 2.8836 1.6764 5.6528 44 1 1.3933 1.1437 4.8382 45 1 0.2917 1.9816 8.2509 46 1 1.6259 -1.6698 1.2695 47 1 1.6409 -0.0887 2.0956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424128528.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:35 Heat of formation + Delta-G solvation = -49.449164 kcal Electronic energy + Delta-G solvation = -24057.611603 eV Core-core repulsion = 20853.633211 eV Total energy + Delta-G solvation = -3203.978392 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80129 -38.15592 -35.68049 -34.42250 -33.61554 -32.74727 -30.10369 -30.03354 -26.64796 -26.45057 -25.98391 -24.08019 -22.76844 -21.29176 -20.37189 -20.00195 -18.51019 -16.86367 -16.53284 -16.08787 -15.49911 -15.15642 -15.03111 -14.69073 -14.39651 -14.18626 -14.09919 -13.45835 -13.04937 -12.83634 -12.54688 -12.42293 -12.32853 -12.27717 -11.99729 -11.84137 -11.59636 -11.41192 -11.30212 -10.95382 -10.86859 -10.66998 -10.61273 -10.55647 -10.49409 -10.37612 -9.80753 -9.64714 -9.28263 -8.98458 -8.56800 -8.30179 -8.12240 -5.92955 -3.95150 2.83301 3.06716 3.36393 3.41021 3.43510 4.44420 4.48935 4.53600 4.68450 4.82837 4.88654 4.96302 5.04110 5.05582 5.27843 5.40717 5.42532 5.42777 5.50216 5.53099 5.55635 5.60112 5.70387 5.76084 5.78331 5.86119 5.92528 5.96654 6.04017 6.09849 6.13552 6.18233 6.22104 6.36914 6.47356 6.68081 6.82700 7.10122 7.42318 7.57852 7.76396 7.83225 7.96956 8.14250 8.42097 8.49509 9.12610 9.67995 11.17864 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020069 B = 0.004478 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.848758 B = 6250.641122 C = 6768.356194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.114 4.114 3 H 0.073 0.927 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.127 4.127 7 C 0.144 3.856 8 H 0.069 0.931 9 C -0.161 4.161 10 N -0.603 5.603 11 C 0.487 3.513 12 O -0.548 6.548 13 C 0.076 3.924 14 H 0.095 0.905 15 N -0.808 5.808 16 C -0.095 4.095 17 C 0.033 3.967 18 C -0.522 4.522 19 H 0.051 0.949 20 C 0.059 3.941 21 N -0.893 5.893 22 Si 0.888 3.112 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.278 1.278 26 C 0.112 3.888 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.053 0.947 38 H 0.045 0.955 39 H 0.347 0.653 40 H 0.332 0.668 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.034 0.966 44 H 0.012 0.988 45 H 0.260 0.740 46 H 0.076 0.924 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.273 -4.683 -19.664 20.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.133 4.133 3 H 0.091 0.909 4 C -0.150 4.150 5 C -0.156 4.156 6 C -0.166 4.166 7 C 0.039 3.961 8 H 0.088 0.912 9 C -0.218 4.218 10 N -0.336 5.336 11 C 0.275 3.725 12 O -0.426 6.426 13 C -0.039 4.039 14 H 0.113 0.887 15 N -0.335 5.335 16 C -0.133 4.133 17 C -0.005 4.005 18 C -0.561 4.561 19 H 0.069 0.931 20 C -0.142 4.142 21 N -0.532 5.532 22 Si 0.716 3.284 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.204 1.204 26 C -0.009 4.009 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.161 0.839 40 H 0.144 0.856 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.053 0.947 44 H 0.030 0.970 45 H 0.069 0.931 46 H 0.095 0.905 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.236 -4.331 -19.059 19.673 hybrid contribution 0.325 -1.020 0.007 1.070 sum 2.561 -5.351 -19.052 19.954 Atomic orbital electron populations 1.21957 0.94469 1.02205 1.02298 1.20522 0.96537 1.00917 0.95337 0.90915 1.21149 0.96852 1.00208 0.96789 1.21537 0.94512 0.99354 1.00198 1.22658 0.98394 0.99661 0.95898 1.20597 0.94450 0.91900 0.89182 0.91247 1.22365 0.97983 1.01300 1.00164 1.48282 1.06756 1.42898 1.35687 1.22596 0.88292 0.79404 0.82196 1.90591 1.14636 1.64979 1.72393 1.21860 0.96345 0.92026 0.93714 0.88710 1.59018 1.22368 1.15942 1.36196 1.21656 1.00849 0.96759 0.94058 1.19001 0.93970 0.95666 0.91815 1.21238 1.32879 0.98075 1.03878 0.93091 1.24974 0.96077 0.94951 0.98202 1.69961 1.36681 1.14569 1.31982 0.86730 0.78360 0.80698 0.82602 1.20333 1.21331 1.20381 1.21316 0.78326 1.02346 0.98934 0.92000 0.92494 0.92433 0.91296 0.91420 0.92042 0.92651 0.91684 0.91366 0.89500 0.92765 0.93572 0.83918 0.85616 0.92851 0.92946 0.94713 0.96995 0.93059 0.90546 0.87997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.90 37.16 0.33 -0.99 16 2 C -0.11 -1.10 2.22 -94.08 -0.21 -1.31 16 3 H 0.07 0.78 6.93 -51.93 -0.36 0.42 16 4 C -0.11 -0.97 5.19 -28.40 -0.15 -1.12 16 5 C -0.12 -1.12 5.65 -27.19 -0.15 -1.28 16 6 C -0.13 -1.31 5.72 -24.76 -0.14 -1.46 16 7 C 0.14 1.70 2.17 -68.55 -0.15 1.55 16 8 H 0.07 0.74 6.87 -51.93 -0.36 0.38 16 9 C -0.16 -2.12 7.77 37.16 0.29 -1.83 16 10 N -0.60 -7.91 2.49 -167.82 -0.42 -8.33 16 11 C 0.49 7.74 6.36 -10.98 -0.07 7.67 16 12 O -0.55 -9.78 13.07 5.55 0.07 -9.71 16 13 C 0.08 1.29 2.29 -68.86 -0.16 1.13 16 14 H 0.10 1.54 6.60 -51.93 -0.34 1.20 16 15 N -0.81 -13.82 8.44 -5.65 -0.05 -13.87 16 16 C -0.09 -1.92 4.52 -26.73 -0.12 -2.04 16 17 C 0.03 0.83 4.86 -27.88 -0.14 0.69 16 18 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 19 H 0.05 1.40 7.74 -52.49 -0.41 0.99 16 20 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -26.81 13.29 55.43 0.74 -26.07 16 22 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 C 0.11 1.28 4.60 -5.21 -0.02 1.25 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.06 0.45 7.97 -51.93 -0.41 0.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.07 0.59 6.28 -51.93 -0.33 0.26 16 31 H 0.07 0.52 7.72 -51.93 -0.40 0.12 16 32 H 0.06 0.67 6.83 -51.93 -0.35 0.32 16 33 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.77 7.81 -51.93 -0.41 0.37 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 36 H 0.09 1.32 5.89 -51.93 -0.31 1.01 16 37 H 0.05 0.82 7.76 -51.93 -0.40 0.42 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.35 6.03 8.58 -39.29 -0.34 5.70 16 40 H 0.33 4.98 9.06 -39.29 -0.36 4.63 16 41 H 0.05 1.03 7.36 -51.93 -0.38 0.65 16 42 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 43 H 0.03 0.96 7.75 -51.93 -0.40 0.56 16 44 H 0.01 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 46 H 0.08 0.80 8.12 -51.93 -0.42 0.37 16 47 H 0.10 1.30 5.16 -51.93 -0.27 1.04 16 LS Contribution 352.72 15.07 5.32 5.32 Total: -1.00 -30.84 352.72 -8.80 -39.64 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -8.34 Total: 7.51 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: -1.10 Total: -11.15 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.27 Total: -48.27 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.07 Total: -9.71 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -30.84 -8.80 -39.64 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424128528.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.813 kcal (2) G-P(sol) polarization free energy of solvation -30.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds