Wall clock time and date at job start Tue Mar 31 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08991 * 108.46015 * 2 1 4 4 C 1.52532 * 108.39870 * 242.35481 * 2 1 3 5 5 C 1.50128 * 105.41250 * 149.43947 * 4 2 1 6 6 C 1.54839 * 110.82222 * 97.68422 * 5 4 2 7 7 C 1.54904 * 110.14032 * 321.13742 * 6 5 4 8 8 H 1.08998 * 108.16199 * 80.14292 * 7 6 5 9 9 C 1.52998 * 108.15970 * 196.92418 * 7 6 5 10 10 N 1.43442 * 116.07350 * 318.64202 * 7 6 5 11 11 C 1.34774 * 120.53260 * 271.54360 * 10 7 6 12 12 O 1.21290 * 119.99959 * 5.57515 * 11 10 7 13 13 C 1.50704 * 120.00299 * 185.57174 * 11 10 7 14 14 H 1.09002 * 109.46655 * 320.00416 * 13 11 10 15 15 N 1.46896 * 109.47393 * 200.00287 * 13 11 10 16 16 C 1.53002 * 109.46851 * 80.00015 * 13 11 10 17 17 C 1.52999 * 109.46986 * 185.00148 * 16 13 11 18 18 C 1.50699 * 109.47144 * 179.97438 * 17 16 13 19 19 H 1.08002 * 119.99990 * 0.02562 * 18 17 16 20 20 C 1.37871 * 119.99814 * 179.97438 * 18 17 16 21 21 N 1.31515 * 120.00485 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 119.99673 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.46937 * 60.00655 * 22 20 18 24 24 H 1.48507 * 109.46827 * 180.02562 * 22 20 18 25 25 H 1.48492 * 109.47397 * 300.00316 * 22 20 18 26 26 C 1.46231 * 108.52337 * 117.71683 * 2 1 3 27 27 H 1.09002 * 109.46891 * 302.28200 * 1 2 3 28 28 H 1.09000 * 109.47444 * 62.28933 * 1 2 3 29 29 H 1.09003 * 109.46684 * 182.28569 * 1 2 3 30 30 H 1.08996 * 110.25249 * 268.40875 * 4 2 1 31 31 H 1.09005 * 110.25123 * 30.32419 * 4 2 1 32 32 H 1.09003 * 109.20332 * 337.34250 * 5 4 2 33 33 H 1.09003 * 109.20907 * 218.03458 * 5 4 2 34 34 H 1.09002 * 109.35834 * 200.93010 * 6 5 4 35 35 H 1.09003 * 109.35660 * 81.33813 * 6 5 4 36 36 H 1.08998 * 109.47140 * 49.00360 * 9 7 6 37 37 H 1.09003 * 109.47076 * 168.99621 * 9 7 6 38 38 H 1.08996 * 109.47480 * 288.99770 * 9 7 6 39 39 H 1.00898 * 110.99919 * 300.00243 * 15 13 11 40 40 H 1.00896 * 110.99941 * 63.94981 * 15 13 11 41 41 H 1.08995 * 109.47288 * 305.00307 * 16 13 11 42 42 H 1.09001 * 109.46803 * 65.00101 * 16 13 11 43 43 H 1.08995 * 109.47237 * 300.00190 * 17 16 13 44 44 H 1.09004 * 109.47010 * 59.99974 * 17 16 13 45 45 H 0.96996 * 120.00447 * 179.97438 * 21 20 18 46 46 H 1.08997 * 109.85062 * 59.98688 * 26 2 1 47 47 H 1.08997 * 109.90175 * 299.02729 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8751 1.0338 0.0000 4 6 2.0115 -0.6716 -1.2821 5 6 3.3199 -0.0129 -1.6105 6 6 4.5085 -0.8704 -1.1110 7 6 4.1726 -1.4975 0.2650 8 1 3.5471 -2.3738 0.0955 9 6 5.4798 -1.9655 0.9076 10 7 3.4960 -0.6440 1.1985 11 6 4.1965 0.1456 2.0365 12 8 5.4034 0.2148 1.9377 13 6 3.4804 0.9426 3.0963 14 1 2.5557 1.3466 2.6841 15 7 4.3403 2.0461 3.5439 16 6 3.1554 0.0350 4.2844 17 6 2.3202 0.8105 5.3051 18 6 1.9996 -0.0836 6.4751 19 1 2.3562 -1.1029 6.4894 20 6 1.2519 0.4000 7.5277 21 7 0.8181 1.6414 7.5105 22 14 0.8551 -0.7081 8.9782 23 1 2.1179 -1.1623 9.6141 24 1 0.0444 0.0447 9.9689 25 1 0.0872 -1.8875 8.5047 26 6 1.9946 -0.6449 1.2275 27 1 -0.3633 0.5489 0.8688 28 1 -0.3634 0.4779 -0.9098 29 1 -0.3633 -1.0269 0.0410 30 1 2.1575 -1.7390 -1.1170 31 1 1.2929 -0.5096 -2.0857 32 1 3.3583 0.9661 -1.1327 33 1 3.3972 0.1127 -2.6905 34 1 5.3931 -0.2408 -1.0150 35 1 4.7088 -1.6642 -1.8306 36 1 6.2161 -1.1633 0.8593 37 1 5.2984 -2.2298 1.9494 38 1 5.8564 -2.8370 0.3721 39 1 5.2046 1.6972 3.9303 40 1 4.5166 2.6952 2.7917 41 1 2.5920 -0.8309 3.9367 42 1 4.0823 -0.2982 4.7512 43 1 2.8836 1.6764 5.6528 44 1 1.3933 1.1437 4.8382 45 1 0.2917 1.9816 8.2509 46 1 1.6259 -1.6698 1.2695 47 1 1.6409 -0.0887 2.0956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424128528.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:34 Heat of formation + Delta-G solvation = -68.684116 kcal Electronic energy + Delta-G solvation = -24058.445693 eV Core-core repulsion = 20853.633211 eV Total energy + Delta-G solvation = -3204.812482 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.90836 -39.21675 -37.10507 -35.56886 -34.87600 -34.43025 -31.93228 -31.00493 -28.23269 -27.33250 -27.00988 -25.66205 -23.94607 -22.55676 -21.65303 -21.06990 -19.74320 -18.44342 -17.89898 -17.57803 -16.73863 -16.47549 -16.27090 -15.88392 -15.71155 -15.29377 -15.12794 -14.91348 -14.29008 -14.07742 -13.82316 -13.71409 -13.46924 -13.37845 -13.22002 -13.18025 -12.77871 -12.74603 -12.53760 -12.46929 -12.26196 -12.09849 -11.78082 -11.71087 -11.50970 -11.43078 -11.33212 -11.20342 -11.13476 -10.67036 -10.46858 -9.63735 -9.52301 -8.12866 -6.23369 1.42133 1.44843 1.52212 1.55737 1.98951 2.45175 3.20038 3.39501 3.61329 3.66669 3.88889 3.94388 4.02994 4.08181 4.11014 4.21928 4.30657 4.38674 4.53895 4.59190 4.68169 4.71173 4.76746 4.79298 4.86390 4.90683 4.92399 4.99568 5.04613 5.17390 5.22109 5.23207 5.29070 5.36165 5.39533 5.42911 5.49965 5.57039 5.79668 5.83896 5.98402 6.10301 6.30575 6.37114 6.49743 6.94451 7.19292 7.44758 8.98105 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020069 B = 0.004478 C = 0.004136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1394.848758 B = 6250.641122 C = 6768.356194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.110 4.110 3 H 0.058 0.942 4 C -0.106 4.106 5 C -0.116 4.116 6 C -0.122 4.122 7 C 0.138 3.862 8 H 0.093 0.907 9 C -0.155 4.155 10 N -0.596 5.596 11 C 0.489 3.511 12 O -0.571 6.571 13 C 0.084 3.916 14 H 0.102 0.898 15 N -0.819 5.819 16 C -0.078 4.078 17 C 0.043 3.957 18 C -0.544 4.544 19 H 0.054 0.946 20 C 0.005 3.995 21 N -0.929 5.929 22 Si 0.958 3.042 23 H -0.272 1.272 24 H -0.283 1.283 25 H -0.265 1.265 26 C 0.109 3.891 27 H 0.048 0.952 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.041 0.959 33 H 0.071 0.929 34 H 0.044 0.956 35 H 0.092 0.908 36 H 0.063 0.937 37 H 0.029 0.971 38 H 0.070 0.930 39 H 0.344 0.656 40 H 0.344 0.656 41 H 0.064 0.936 42 H 0.039 0.961 43 H 0.004 0.996 44 H -0.006 1.006 45 H 0.262 0.738 46 H 0.094 0.906 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.455 -6.610 -21.163 22.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.129 4.129 3 H 0.077 0.923 4 C -0.143 4.143 5 C -0.153 4.153 6 C -0.160 4.160 7 C 0.033 3.967 8 H 0.111 0.889 9 C -0.212 4.212 10 N -0.328 5.328 11 C 0.276 3.724 12 O -0.451 6.451 13 C -0.032 4.032 14 H 0.119 0.881 15 N -0.348 5.348 16 C -0.117 4.117 17 C 0.005 3.995 18 C -0.582 4.582 19 H 0.072 0.928 20 C -0.193 4.193 21 N -0.569 5.569 22 Si 0.783 3.217 23 H -0.197 1.197 24 H -0.209 1.209 25 H -0.190 1.190 26 C -0.012 4.012 27 H 0.067 0.933 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.110 0.890 36 H 0.082 0.918 37 H 0.048 0.952 38 H 0.089 0.911 39 H 0.158 0.842 40 H 0.157 0.843 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.022 0.978 44 H 0.012 0.988 45 H 0.071 0.929 46 H 0.112 0.888 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.402 -6.274 -20.592 21.572 hybrid contribution 0.582 -0.404 0.447 0.838 sum 1.984 -6.679 -20.145 21.316 Atomic orbital electron populations 1.21927 0.93489 1.02818 1.02328 1.20453 0.97244 1.00049 0.95184 0.92329 1.21139 0.96525 1.00334 0.96343 1.21512 0.94639 0.98223 1.00952 1.22620 0.97951 1.00125 0.95339 1.20826 0.93992 0.92449 0.89395 0.88921 1.22269 0.98319 1.01459 0.99191 1.48314 1.07582 1.41808 1.35071 1.22184 0.87861 0.79791 0.82571 1.90597 1.15432 1.65833 1.73208 1.21629 0.96880 0.91708 0.92940 0.88072 1.58993 1.22263 1.16423 1.37073 1.21358 0.99278 0.97001 0.94037 1.18793 0.93379 0.94825 0.92455 1.21672 1.32955 0.98592 1.04977 0.92759 1.25867 0.95839 0.96395 1.01231 1.70095 1.37370 1.16428 1.33025 0.85620 0.78353 0.78944 0.78825 1.19734 1.20875 1.18995 1.21470 0.77036 1.03345 0.99303 0.93317 0.91298 0.91378 0.90419 0.89744 0.94019 0.91076 0.93708 0.88952 0.91834 0.95158 0.91143 0.84232 0.84288 0.91730 0.94260 0.97785 0.98783 0.92918 0.88796 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 8.90 71.98 0.64 -1.63 16 2 C -0.11 -1.93 2.22 -13.03 -0.03 -1.96 16 3 H 0.06 1.21 6.93 -2.39 -0.02 1.19 16 4 C -0.11 -1.49 5.19 29.51 0.15 -1.34 16 5 C -0.12 -1.92 5.65 30.30 0.17 -1.75 16 6 C -0.12 -2.24 5.72 31.87 0.18 -2.06 16 7 C 0.14 2.99 2.17 46.21 0.10 3.09 16 8 H 0.09 1.64 6.87 -2.39 -0.02 1.62 16 9 C -0.15 -3.95 7.77 71.98 0.56 -3.39 16 10 N -0.60 -15.08 2.49 -803.26 -2.00 -17.08 16 11 C 0.49 15.63 6.36 87.66 0.56 16.19 16 12 O -0.57 -20.75 13.07 -3.06 -0.04 -20.79 16 13 C 0.08 2.91 2.29 44.17 0.10 3.01 16 14 H 0.10 3.37 6.60 -2.39 -0.02 3.35 16 15 N -0.82 -28.97 8.44 -171.80 -1.45 -30.42 16 16 C -0.08 -3.25 4.52 30.59 0.14 -3.11 16 17 C 0.04 2.24 4.86 29.85 0.15 2.38 16 18 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 19 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 20 C 0.00 0.27 5.46 84.65 0.46 0.73 16 21 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 22 Si 0.96 44.41 29.54 68.60 2.03 46.44 16 23 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 C 0.11 2.33 4.60 83.58 0.38 2.72 16 27 H 0.05 0.87 8.14 -2.39 -0.02 0.86 16 28 H 0.07 0.90 7.97 -2.39 -0.02 0.89 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.08 1.00 6.28 -2.39 -0.02 0.98 16 31 H 0.08 0.96 7.72 -2.38 -0.02 0.94 16 32 H 0.04 0.86 6.83 -2.39 -0.02 0.85 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.04 1.02 7.81 -2.39 -0.02 1.00 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.93 5.89 -2.39 -0.01 1.92 16 37 H 0.03 0.89 7.76 -2.39 -0.02 0.88 16 38 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.34 12.45 8.58 -89.70 -0.77 11.68 16 40 H 0.34 10.60 9.06 -89.70 -0.81 9.79 16 41 H 0.06 2.50 7.36 -2.39 -0.02 2.48 16 42 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.00 0.22 7.75 -2.39 -0.02 0.20 16 44 H -0.01 -0.34 8.14 -2.38 -0.02 -0.36 16 45 H 0.26 15.09 8.31 -92.71 -0.77 14.31 16 46 H 0.09 1.71 8.12 -2.39 -0.02 1.70 16 47 H 0.08 2.13 5.16 -2.39 -0.01 2.12 16 Total: -1.00 -67.31 352.72 1.99 -65.32 By element: Atomic # 1 Polarization: 31.45 SS G_CDS: -0.63 Total: 30.83 kcal Atomic # 6 Polarization: -21.69 SS G_CDS: 3.80 Total: -17.89 kcal Atomic # 7 Polarization: -100.73 SS G_CDS: -3.17 Total: -103.89 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.04 Total: -20.79 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -67.31 1.99 -65.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424128528.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.369 kcal (2) G-P(sol) polarization free energy of solvation -67.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds