Wall clock time and date at job start Tue Mar 31 2020 06:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 108.45954 * 2 1 4 4 C 1.52524 * 108.39766 * 242.35615 * 2 1 3 5 5 C 1.50122 * 105.41493 * 149.44218 * 4 2 1 6 6 C 1.54843 * 110.81797 * 97.67833 * 5 4 2 7 7 C 1.54403 * 110.07159 * 321.07373 * 6 5 4 8 8 H 1.09001 * 108.09947 * 80.53840 * 7 6 5 9 9 C 1.52997 * 107.89310 * 196.93040 * 7 6 5 10 10 N 1.43429 * 116.39153 * 318.65452 * 7 6 5 11 11 C 1.34774 * 120.53569 * 271.72985 * 10 7 6 12 12 O 1.21286 * 119.99993 * 355.43876 * 11 10 7 13 13 C 1.50704 * 120.00300 * 175.44234 * 11 10 7 14 14 H 1.09002 * 109.46983 * 39.99611 * 13 11 10 15 15 N 1.46898 * 109.47351 * 159.99846 * 13 11 10 16 16 C 1.53004 * 109.47038 * 279.99745 * 13 11 10 17 17 C 1.52994 * 109.47097 * 174.99800 * 16 13 11 18 18 C 1.50703 * 109.47329 * 180.02562 * 17 16 13 19 19 H 1.08004 * 119.99463 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00071 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00396 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99891 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47206 * 180.02562 * 22 20 18 24 24 H 1.48507 * 109.47038 * 300.00145 * 22 20 18 25 25 H 1.48493 * 109.47213 * 59.99939 * 22 20 18 26 26 C 1.46234 * 108.52242 * 117.71052 * 2 1 3 27 27 H 1.09000 * 109.46528 * 302.29211 * 1 2 3 28 28 H 1.09005 * 109.47106 * 62.28296 * 1 2 3 29 29 H 1.08997 * 109.47404 * 182.29098 * 1 2 3 30 30 H 1.09002 * 110.24520 * 268.40934 * 4 2 1 31 31 H 1.08997 * 110.25201 * 30.32187 * 4 2 1 32 32 H 1.09003 * 109.20940 * 218.02528 * 5 4 2 33 33 H 1.09001 * 109.20986 * 337.33317 * 5 4 2 34 34 H 1.09001 * 109.35913 * 81.34379 * 6 5 4 35 35 H 1.09007 * 109.35950 * 201.06071 * 6 5 4 36 36 H 1.08997 * 109.47562 * 169.76591 * 9 7 6 37 37 H 1.08996 * 109.47221 * 289.77122 * 9 7 6 38 38 H 1.09005 * 109.46745 * 49.76383 * 9 7 6 39 39 H 1.00904 * 111.00115 * 59.99935 * 15 13 11 40 40 H 1.00904 * 111.00264 * 183.95372 * 15 13 11 41 41 H 1.09003 * 109.46562 * 54.99974 * 16 13 11 42 42 H 1.08998 * 109.47113 * 295.00065 * 16 13 11 43 43 H 1.08998 * 109.47350 * 59.99861 * 17 16 13 44 44 H 1.08998 * 109.47355 * 300.00116 * 17 16 13 45 45 H 0.96995 * 119.99739 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.84178 * 59.98816 * 26 2 1 47 47 H 1.08999 * 109.90472 * 299.03777 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8752 1.0339 0.0000 4 6 2.0115 -0.6715 -1.2821 5 6 3.3199 -0.0129 -1.6104 6 6 4.5084 -0.8706 -1.1108 7 6 4.1724 -1.4934 0.2615 8 1 3.5520 -2.3733 0.0913 9 6 5.4825 -1.9594 0.8996 10 7 3.4960 -0.6440 1.1987 11 6 4.1965 0.1463 2.0360 12 8 5.4075 0.0828 2.0588 13 6 3.4752 1.1088 2.9440 14 1 2.5780 0.6324 3.3393 15 7 4.3579 1.4889 4.0551 16 6 3.0829 2.3588 2.1537 17 6 2.2433 3.2802 3.0407 18 6 1.8564 4.5112 2.2622 19 1 2.1770 4.6247 1.2371 20 6 1.0923 5.4919 2.8582 21 7 0.7015 5.3535 4.1063 22 14 0.6133 7.0181 1.8933 23 1 -0.2019 7.9124 2.7542 24 1 1.8396 7.7337 1.4580 25 1 -0.1781 6.6218 0.7010 26 6 1.9946 -0.6448 1.2276 27 1 -0.3632 0.5490 0.8687 28 1 -0.3633 0.4780 -0.9098 29 1 -0.3634 -1.0268 0.0411 30 1 2.1574 -1.7390 -1.1169 31 1 1.2929 -0.5095 -2.0855 32 1 3.3972 0.1125 -2.6905 33 1 3.3585 0.9662 -1.1329 34 1 4.7087 -1.6644 -1.8304 35 1 5.3925 -0.2406 -1.0125 36 1 5.3026 -2.2359 1.9385 37 1 5.8650 -2.8226 0.3550 38 1 6.2134 -1.1517 0.8599 39 1 5.1974 1.9329 3.7143 40 1 3.8759 2.0832 4.7128 41 1 2.5016 2.0679 1.2788 42 1 3.9830 2.8837 1.8338 43 1 2.8246 3.5711 3.9157 44 1 1.3432 2.7554 3.3607 45 1 0.1642 6.0437 4.5256 46 1 1.6259 -1.6697 1.2695 47 1 1.6408 -0.0886 2.0956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424128529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:38 Heat of formation + Delta-G solvation = -46.330587 kcal Electronic energy + Delta-G solvation = -24395.833687 eV Core-core repulsion = 21191.990527 eV Total energy + Delta-G solvation = -3203.843160 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73004 -37.95137 -35.92994 -34.29639 -33.55572 -32.80232 -29.99142 -29.87935 -26.69443 -26.33686 -25.89135 -24.14096 -22.81932 -21.12364 -20.79365 -19.72189 -18.38128 -17.02332 -16.37838 -16.20138 -15.38224 -15.03202 -14.68419 -14.44894 -14.34590 -14.17968 -13.96584 -13.28335 -13.05242 -12.77613 -12.64176 -12.46882 -12.31735 -12.25275 -12.01561 -11.79709 -11.64946 -11.44295 -11.29187 -10.99259 -10.83417 -10.78577 -10.65148 -10.49955 -10.41855 -10.25316 -9.87864 -9.67334 -9.26368 -8.83829 -8.46023 -8.43643 -8.11661 -6.08788 -4.11860 2.97830 3.12290 3.27570 3.32698 3.35039 4.38554 4.56396 4.59937 4.81861 4.95593 4.98882 5.09356 5.14858 5.23712 5.27677 5.35235 5.49266 5.52501 5.55678 5.66462 5.69417 5.70026 5.80133 5.82481 5.84098 5.90800 6.06078 6.09925 6.15977 6.22987 6.27754 6.31698 6.32889 6.46617 6.48681 6.59522 6.90550 6.92698 7.45395 7.52058 7.61493 7.69337 7.88217 7.93557 8.31076 8.58389 8.93737 9.53037 11.02044 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017478 B = 0.005359 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.586033 B = 5223.339032 C = 6034.175260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 H 0.086 0.914 4 C -0.110 4.110 5 C -0.122 4.122 6 C -0.129 4.129 7 C 0.147 3.853 8 H 0.068 0.932 9 C -0.155 4.155 10 N -0.607 5.607 11 C 0.529 3.471 12 O -0.532 6.532 13 C 0.072 3.928 14 H 0.094 0.906 15 N -0.831 5.831 16 C -0.139 4.139 17 C 0.026 3.974 18 C -0.523 4.523 19 H 0.053 0.947 20 C 0.060 3.940 21 N -0.893 5.893 22 Si 0.891 3.109 23 H -0.287 1.287 24 H -0.277 1.277 25 H -0.277 1.277 26 C 0.118 3.882 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.052 0.948 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.055 0.945 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.040 0.960 38 H 0.087 0.913 39 H 0.345 0.655 40 H 0.353 0.647 41 H 0.060 0.940 42 H 0.052 0.948 43 H 0.017 0.983 44 H 0.017 0.983 45 H 0.262 0.738 46 H 0.072 0.928 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.733 -14.527 -8.881 17.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.141 4.141 3 H 0.104 0.896 4 C -0.147 4.147 5 C -0.159 4.159 6 C -0.168 4.168 7 C 0.042 3.958 8 H 0.086 0.914 9 C -0.212 4.212 10 N -0.341 5.341 11 C 0.318 3.682 12 O -0.408 6.408 13 C -0.043 4.043 14 H 0.112 0.888 15 N -0.363 5.363 16 C -0.179 4.179 17 C -0.011 4.011 18 C -0.561 4.561 19 H 0.071 0.929 20 C -0.141 4.141 21 N -0.532 5.532 22 Si 0.719 3.281 23 H -0.212 1.212 24 H -0.203 1.203 25 H -0.202 1.202 26 C -0.003 4.003 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.083 0.917 36 H 0.072 0.928 37 H 0.059 0.941 38 H 0.105 0.895 39 H 0.158 0.842 40 H 0.168 0.832 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.035 0.965 44 H 0.035 0.965 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.336 -15.260 -8.524 17.635 hybrid contribution -0.645 1.935 -0.930 2.241 sum 1.691 -13.325 -9.454 16.426 Atomic orbital electron populations 1.21931 0.94593 1.01506 1.02710 1.20631 0.96586 1.01858 0.95031 0.89641 1.21121 0.96911 0.99817 0.96900 1.21570 0.94364 0.99672 1.00335 1.22609 0.98555 0.99702 0.95898 1.20464 0.94455 0.91779 0.89117 0.91380 1.22410 0.97745 1.01150 0.99915 1.48108 1.06646 1.43250 1.36046 1.20789 0.87639 0.79787 0.79956 1.90597 1.14184 1.67616 1.68434 1.21553 0.95503 0.95327 0.91941 0.88816 1.58764 1.09270 1.52027 1.16218 1.22447 1.00869 0.94722 0.99823 1.19077 0.94178 0.93361 0.94456 1.21122 1.32690 1.03674 0.98586 0.92870 1.24987 0.95919 0.98333 0.94905 1.69938 1.36862 1.34563 1.11830 0.86677 0.78600 0.82956 0.79900 1.21210 1.20255 1.20228 1.21234 0.78426 1.01522 0.99156 0.91918 0.92404 0.92931 0.91560 0.91459 0.92651 0.91596 0.91314 0.91690 0.92782 0.94113 0.89452 0.84230 0.83240 0.92158 0.92905 0.96510 0.96452 0.92843 0.90939 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.91 37.16 0.33 -1.25 16 2 C -0.12 -1.41 2.17 -94.08 -0.20 -1.61 16 3 H 0.09 1.22 4.62 -51.93 -0.24 0.98 16 4 C -0.11 -1.11 5.19 -28.41 -0.15 -1.26 16 5 C -0.12 -1.38 5.65 -27.19 -0.15 -1.53 16 6 C -0.13 -1.46 5.70 -25.02 -0.14 -1.61 16 7 C 0.15 1.80 2.18 -68.82 -0.15 1.65 16 8 H 0.07 0.72 6.89 -51.93 -0.36 0.37 16 9 C -0.15 -2.06 7.66 37.16 0.28 -1.78 16 10 N -0.61 -8.29 2.51 -168.14 -0.42 -8.71 16 11 C 0.53 8.88 6.56 -10.98 -0.07 8.81 16 12 O -0.53 -10.13 12.65 5.55 0.07 -10.06 16 13 C 0.07 1.24 2.39 -68.86 -0.16 1.07 16 14 H 0.09 1.55 6.30 -51.93 -0.33 1.22 16 15 N -0.83 -14.56 8.94 -5.65 -0.05 -14.61 16 16 C -0.14 -2.72 4.72 -26.73 -0.13 -2.84 16 17 C 0.03 0.63 4.74 -27.88 -0.13 0.50 16 18 C -0.52 -14.15 9.11 -34.44 -0.31 -14.46 16 19 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -25.79 13.29 55.43 0.74 -25.05 16 22 Si 0.89 21.14 29.54 -169.99 -5.02 16.12 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.12 1.39 4.61 -5.21 -0.02 1.36 16 27 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.06 0.60 7.98 -51.93 -0.41 0.19 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.62 6.28 -51.93 -0.33 0.29 16 31 H 0.07 0.63 7.72 -51.93 -0.40 0.23 16 32 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.90 6.83 -51.93 -0.35 0.55 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.84 7.79 -51.93 -0.40 0.44 16 36 H 0.05 0.80 7.63 -51.93 -0.40 0.40 16 37 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.09 1.37 5.91 -51.93 -0.31 1.06 16 39 H 0.34 6.13 8.58 -39.29 -0.34 5.79 16 40 H 0.35 6.19 7.55 -39.29 -0.30 5.89 16 41 H 0.06 1.13 5.31 -51.93 -0.28 0.86 16 42 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 43 H 0.02 0.42 6.87 -51.93 -0.36 0.06 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 46 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 47 H 0.10 1.20 5.59 -51.93 -0.29 0.91 16 LS Contribution 346.30 15.07 5.22 5.22 Total: -1.00 -29.56 346.30 -8.59 -38.15 By element: Atomic # 1 Polarization: 18.36 SS G_CDS: -8.01 Total: 10.35 kcal Atomic # 6 Polarization: -10.28 SS G_CDS: -1.11 Total: -11.40 kcal Atomic # 7 Polarization: -48.64 SS G_CDS: 0.26 Total: -48.38 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.07 Total: -10.06 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -29.56 -8.59 -38.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424128529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.179 kcal (2) G-P(sol) polarization free energy of solvation -29.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds