Wall clock time and date at job start Tue Mar 31 2020 06:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09000 * 108.45954 * 2 1 4 4 C 1.52524 * 108.39766 * 242.35615 * 2 1 3 5 5 C 1.50122 * 105.41493 * 149.44218 * 4 2 1 6 6 C 1.54843 * 110.81797 * 97.67833 * 5 4 2 7 7 C 1.54403 * 110.07159 * 321.07373 * 6 5 4 8 8 H 1.09001 * 108.09947 * 80.53840 * 7 6 5 9 9 C 1.52997 * 107.89310 * 196.93040 * 7 6 5 10 10 N 1.43429 * 116.39153 * 318.65452 * 7 6 5 11 11 C 1.34774 * 120.53569 * 271.72985 * 10 7 6 12 12 O 1.21286 * 119.99993 * 355.43876 * 11 10 7 13 13 C 1.50704 * 120.00300 * 175.44234 * 11 10 7 14 14 H 1.09002 * 109.46983 * 39.99611 * 13 11 10 15 15 N 1.46898 * 109.47351 * 159.99846 * 13 11 10 16 16 C 1.53004 * 109.47038 * 279.99745 * 13 11 10 17 17 C 1.52994 * 109.47097 * 174.99800 * 16 13 11 18 18 C 1.50703 * 109.47329 * 180.02562 * 17 16 13 19 19 H 1.08004 * 119.99463 * 0.02562 * 18 17 16 20 20 C 1.37870 * 120.00071 * 179.97438 * 18 17 16 21 21 N 1.31519 * 120.00396 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99891 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47206 * 180.02562 * 22 20 18 24 24 H 1.48507 * 109.47038 * 300.00145 * 22 20 18 25 25 H 1.48493 * 109.47213 * 59.99939 * 22 20 18 26 26 C 1.46234 * 108.52242 * 117.71052 * 2 1 3 27 27 H 1.09000 * 109.46528 * 302.29211 * 1 2 3 28 28 H 1.09005 * 109.47106 * 62.28296 * 1 2 3 29 29 H 1.08997 * 109.47404 * 182.29098 * 1 2 3 30 30 H 1.09002 * 110.24520 * 268.40934 * 4 2 1 31 31 H 1.08997 * 110.25201 * 30.32187 * 4 2 1 32 32 H 1.09003 * 109.20940 * 218.02528 * 5 4 2 33 33 H 1.09001 * 109.20986 * 337.33317 * 5 4 2 34 34 H 1.09001 * 109.35913 * 81.34379 * 6 5 4 35 35 H 1.09007 * 109.35950 * 201.06071 * 6 5 4 36 36 H 1.08997 * 109.47562 * 169.76591 * 9 7 6 37 37 H 1.08996 * 109.47221 * 289.77122 * 9 7 6 38 38 H 1.09005 * 109.46745 * 49.76383 * 9 7 6 39 39 H 1.00904 * 111.00115 * 59.99935 * 15 13 11 40 40 H 1.00904 * 111.00264 * 183.95372 * 15 13 11 41 41 H 1.09003 * 109.46562 * 54.99974 * 16 13 11 42 42 H 1.08998 * 109.47113 * 295.00065 * 16 13 11 43 43 H 1.08998 * 109.47350 * 59.99861 * 17 16 13 44 44 H 1.08998 * 109.47355 * 300.00116 * 17 16 13 45 45 H 0.96995 * 119.99739 * 179.97438 * 21 20 18 46 46 H 1.09004 * 109.84178 * 59.98816 * 26 2 1 47 47 H 1.08999 * 109.90472 * 299.03777 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8752 1.0339 0.0000 4 6 2.0115 -0.6715 -1.2821 5 6 3.3199 -0.0129 -1.6104 6 6 4.5084 -0.8706 -1.1108 7 6 4.1724 -1.4934 0.2615 8 1 3.5520 -2.3733 0.0913 9 6 5.4825 -1.9594 0.8996 10 7 3.4960 -0.6440 1.1987 11 6 4.1965 0.1463 2.0360 12 8 5.4075 0.0828 2.0588 13 6 3.4752 1.1088 2.9440 14 1 2.5780 0.6324 3.3393 15 7 4.3579 1.4889 4.0551 16 6 3.0829 2.3588 2.1537 17 6 2.2433 3.2802 3.0407 18 6 1.8564 4.5112 2.2622 19 1 2.1770 4.6247 1.2371 20 6 1.0923 5.4919 2.8582 21 7 0.7015 5.3535 4.1063 22 14 0.6133 7.0181 1.8933 23 1 -0.2019 7.9124 2.7542 24 1 1.8396 7.7337 1.4580 25 1 -0.1781 6.6218 0.7010 26 6 1.9946 -0.6448 1.2276 27 1 -0.3632 0.5490 0.8687 28 1 -0.3633 0.4780 -0.9098 29 1 -0.3634 -1.0268 0.0411 30 1 2.1574 -1.7390 -1.1169 31 1 1.2929 -0.5095 -2.0855 32 1 3.3972 0.1125 -2.6905 33 1 3.3585 0.9662 -1.1329 34 1 4.7087 -1.6644 -1.8304 35 1 5.3925 -0.2406 -1.0125 36 1 5.3026 -2.2359 1.9385 37 1 5.8650 -2.8226 0.3550 38 1 6.2134 -1.1517 0.8599 39 1 5.1974 1.9329 3.7143 40 1 3.8759 2.0832 4.7128 41 1 2.5016 2.0679 1.2788 42 1 3.9830 2.8837 1.8338 43 1 2.8246 3.5711 3.9157 44 1 1.3432 2.7554 3.3607 45 1 0.1642 6.0437 4.5256 46 1 1.6259 -1.6697 1.2695 47 1 1.6408 -0.0886 2.0956 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424128529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:37 Heat of formation + Delta-G solvation = -64.522367 kcal Electronic energy + Delta-G solvation = -24396.622542 eV Core-core repulsion = 21191.990527 eV Total energy + Delta-G solvation = -3204.632015 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.88620 -39.10285 -37.40532 -35.48746 -34.88340 -34.45720 -31.70516 -31.00730 -28.25711 -27.28566 -26.96921 -25.78160 -24.00185 -22.46691 -22.07764 -20.82712 -19.70150 -18.56959 -17.97553 -17.48141 -16.62527 -16.38316 -16.05745 -15.76363 -15.55136 -15.37660 -15.31541 -14.71897 -14.52518 -14.20779 -13.80524 -13.63236 -13.53702 -13.30731 -13.24259 -13.13090 -12.94130 -12.73024 -12.70703 -12.51493 -12.40969 -12.09400 -11.92624 -11.70708 -11.53722 -11.33397 -11.32681 -11.21979 -11.15689 -10.55803 -10.18982 -9.60291 -9.57124 -8.21667 -6.32013 1.38567 1.39948 1.47940 1.65056 1.99738 2.39040 3.11855 3.39562 3.67251 3.72203 3.94788 3.96010 4.05133 4.07209 4.14578 4.23596 4.28007 4.41783 4.56709 4.61331 4.62818 4.71431 4.80476 4.81966 4.86293 4.88986 4.90607 5.02692 5.05472 5.08947 5.21010 5.27084 5.35082 5.40748 5.43041 5.45490 5.46326 5.56835 5.65252 5.80339 5.86390 6.07121 6.20619 6.41779 6.46074 6.82250 7.30327 7.36960 8.88892 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017478 B = 0.005359 C = 0.004639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.586033 B = 5223.339032 C = 6034.175260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 H 0.052 0.948 4 C -0.102 4.102 5 C -0.120 4.120 6 C -0.124 4.124 7 C 0.140 3.860 8 H 0.100 0.900 9 C -0.147 4.147 10 N -0.599 5.599 11 C 0.526 3.474 12 O -0.560 6.560 13 C 0.077 3.923 14 H 0.103 0.897 15 N -0.829 5.829 16 C -0.119 4.119 17 C 0.035 3.965 18 C -0.543 4.543 19 H 0.051 0.949 20 C 0.010 3.990 21 N -0.925 5.925 22 Si 0.955 3.045 23 H -0.282 1.282 24 H -0.273 1.273 25 H -0.267 1.267 26 C 0.114 3.886 27 H 0.043 0.957 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.079 0.921 32 H 0.068 0.932 33 H 0.033 0.967 34 H 0.097 0.903 35 H 0.040 0.960 36 H 0.034 0.966 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.342 0.658 40 H 0.351 0.649 41 H 0.067 0.933 42 H 0.036 0.964 43 H -0.001 1.001 44 H 0.002 0.998 45 H 0.264 0.736 46 H 0.106 0.894 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.764 -16.160 -10.804 19.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.138 4.138 3 H 0.070 0.930 4 C -0.139 4.139 5 C -0.158 4.158 6 C -0.162 4.162 7 C 0.036 3.964 8 H 0.118 0.882 9 C -0.205 4.205 10 N -0.331 5.331 11 C 0.314 3.686 12 O -0.439 6.439 13 C -0.038 4.038 14 H 0.121 0.879 15 N -0.360 5.360 16 C -0.159 4.159 17 C -0.002 4.002 18 C -0.581 4.581 19 H 0.069 0.931 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.780 3.220 23 H -0.207 1.207 24 H -0.198 1.198 25 H -0.192 1.192 26 C -0.006 4.006 27 H 0.062 0.938 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.052 0.948 34 H 0.116 0.884 35 H 0.059 0.941 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.155 0.845 40 H 0.165 0.835 41 H 0.086 0.914 42 H 0.055 0.945 43 H 0.018 0.982 44 H 0.020 0.980 45 H 0.073 0.927 46 H 0.124 0.876 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.349 -16.913 -10.470 19.938 hybrid contribution -0.342 2.418 -0.335 2.465 sum 1.008 -14.495 -10.805 18.108 Atomic orbital electron populations 1.21896 0.93661 1.02833 1.01947 1.20560 0.97283 1.00090 0.95851 0.93015 1.21107 0.96147 1.00525 0.96157 1.21540 0.95219 0.98203 1.00826 1.22591 0.97541 1.00125 0.95990 1.20715 0.94355 0.92446 0.88903 0.88209 1.22276 0.97762 1.01120 0.99330 1.48151 1.07554 1.42151 1.35261 1.20615 0.87290 0.80211 0.80442 1.90605 1.15179 1.68639 1.69432 1.21486 0.95998 0.94563 0.91750 0.87888 1.58784 1.09188 1.51813 1.16260 1.22164 0.99333 0.94901 0.99475 1.18915 0.93797 0.93247 0.94254 1.21523 1.32793 1.04955 0.98827 0.93064 1.25805 0.95857 1.01413 0.95827 1.70050 1.37523 1.35653 1.13284 0.85653 0.78413 0.79160 0.78756 1.20679 1.19815 1.19167 1.21427 0.76981 1.03361 0.98847 0.93765 0.92238 0.90411 0.89530 0.90199 0.91350 0.94822 0.88413 0.94096 0.94635 0.91447 0.92344 0.84492 0.83472 0.91427 0.94515 0.98222 0.97992 0.92709 0.87608 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 8.91 71.98 0.64 -2.15 16 2 C -0.12 -2.54 2.17 -13.03 -0.03 -2.57 16 3 H 0.05 1.47 4.62 -2.39 -0.01 1.46 16 4 C -0.10 -1.74 5.19 29.51 0.15 -1.59 16 5 C -0.12 -2.50 5.65 30.30 0.17 -2.33 16 6 C -0.12 -2.55 5.70 31.70 0.18 -2.37 16 7 C 0.14 3.09 2.18 46.03 0.10 3.19 16 8 H 0.10 1.65 6.89 -2.39 -0.02 1.63 16 9 C -0.15 -3.74 7.66 71.98 0.55 -3.19 16 10 N -0.60 -15.66 2.51 -804.27 -2.01 -17.68 16 11 C 0.53 17.79 6.56 87.66 0.57 18.37 16 12 O -0.56 -21.80 12.65 -3.05 -0.04 -21.84 16 13 C 0.08 2.72 2.39 44.17 0.11 2.82 16 14 H 0.10 3.44 6.30 -2.39 -0.02 3.42 16 15 N -0.83 -29.98 8.94 -171.79 -1.54 -31.51 16 16 C -0.12 -4.82 4.72 30.59 0.14 -4.67 16 17 C 0.04 1.74 4.74 29.85 0.14 1.88 16 18 C -0.54 -29.98 9.11 25.60 0.23 -29.75 16 19 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 20 C 0.01 0.54 5.46 84.65 0.46 1.00 16 21 N -0.93 -54.21 13.29 21.45 0.28 -53.93 16 22 Si 0.96 43.41 29.54 68.60 2.03 45.44 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 25 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 26 C 0.11 2.46 4.61 83.58 0.38 2.85 16 27 H 0.04 1.00 8.14 -2.39 -0.02 0.99 16 28 H 0.06 1.12 7.98 -2.38 -0.02 1.10 16 29 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.09 1.17 6.28 -2.39 -0.01 1.15 16 31 H 0.08 1.20 7.72 -2.39 -0.02 1.18 16 32 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.03 0.92 6.83 -2.39 -0.02 0.90 16 34 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.04 1.04 7.79 -2.38 -0.02 1.02 16 36 H 0.03 1.01 7.63 -2.39 -0.02 1.00 16 37 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.84 5.91 -2.38 -0.01 1.82 16 39 H 0.34 12.66 8.58 -89.69 -0.77 11.89 16 40 H 0.35 12.79 7.55 -89.69 -0.68 12.11 16 41 H 0.07 2.63 5.31 -2.39 -0.01 2.62 16 42 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.00 -0.03 6.87 -2.39 -0.02 -0.04 16 44 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 45 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 46 H 0.11 1.65 8.13 -2.39 -0.02 1.63 16 47 H 0.08 2.02 5.59 -2.39 -0.01 2.00 16 Total: -1.00 -65.00 346.30 2.06 -62.94 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: -0.48 Total: 35.08 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 3.82 Total: -18.50 kcal Atomic # 7 Polarization: -99.85 SS G_CDS: -3.27 Total: -103.12 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: -0.04 Total: -21.84 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -65.00 2.06 -62.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424128529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.583 kcal (2) G-P(sol) polarization free energy of solvation -64.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds