Wall clock time and date at job start Tue Mar 31 2020 06:24:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.46943 * 2 1 4 4 C 1.53003 * 109.46849 * 240.00106 * 2 1 3 5 5 C 1.52998 * 109.46749 * 179.97438 * 4 2 1 6 6 C 1.53006 * 109.47011 * 60.00094 * 5 4 2 7 7 H 1.09004 * 109.47095 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47353 * 60.00080 * 6 5 4 9 9 C 1.34772 * 120.00222 * 84.99928 * 8 6 5 10 10 O 1.21283 * 119.99912 * 359.97438 * 9 8 6 11 11 C 1.50700 * 119.99971 * 180.02562 * 9 8 6 12 12 H 1.09001 * 109.46817 * 319.98961 * 11 9 8 13 13 N 1.46910 * 109.46728 * 199.99907 * 11 9 8 14 14 C 1.52992 * 109.47798 * 79.99728 * 11 9 8 15 15 C 1.52997 * 109.47482 * 185.00026 * 14 11 9 16 16 C 1.50701 * 109.47212 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 14 19 19 N 1.31512 * 119.99594 * 180.02562 * 18 16 15 20 20 Si 1.86797 * 119.99875 * 0.02562 * 18 16 15 21 21 H 1.48504 * 109.47061 * 90.00257 * 20 18 16 22 22 H 1.48497 * 109.46906 * 209.99430 * 20 18 16 23 23 H 1.48498 * 109.47403 * 329.99876 * 20 18 16 24 24 C 1.53007 * 109.46957 * 299.99605 * 6 5 4 25 25 H 1.08996 * 109.47241 * 299.99712 * 24 6 5 26 26 C 1.52999 * 109.46728 * 180.02562 * 24 6 5 27 27 C 1.52998 * 109.46938 * 60.00350 * 24 6 5 28 28 H 1.09001 * 109.46943 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47178 * 299.99768 * 1 2 3 30 30 H 1.08997 * 109.47221 * 60.00040 * 1 2 3 31 31 H 1.08997 * 109.47328 * 59.99920 * 4 2 1 32 32 H 1.08993 * 109.47210 * 299.99385 * 4 2 1 33 33 H 1.09001 * 109.47229 * 300.00008 * 5 4 2 34 34 H 1.09001 * 109.47343 * 179.97438 * 5 4 2 35 35 H 0.97003 * 119.99378 * 265.00072 * 8 6 5 36 36 H 1.00892 * 110.99957 * 299.99600 * 13 11 9 37 37 H 1.00899 * 110.99816 * 63.94833 * 13 11 9 38 38 H 1.09002 * 109.47103 * 64.99779 * 14 11 9 39 39 H 1.08998 * 109.46862 * 305.00591 * 14 11 9 40 40 H 1.09002 * 109.47153 * 59.99783 * 15 14 11 41 41 H 1.09001 * 109.46832 * 299.99974 * 15 14 11 42 42 H 0.97002 * 119.99739 * 180.02562 * 19 18 16 43 43 H 1.08997 * 109.47330 * 59.99851 * 26 24 6 44 44 H 1.08997 * 109.46998 * 180.02562 * 26 24 6 45 45 H 1.09001 * 109.47185 * 300.00143 * 26 24 6 46 46 H 1.08997 * 109.47078 * 179.97438 * 27 24 6 47 47 H 1.09001 * 109.47229 * 59.99702 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5700 -0.7207 -1.2496 6 6 4.0805 -1.4416 -0.0003 7 1 5.1705 -1.4416 -0.0007 8 7 3.5927 -2.8230 0.0000 9 6 4.2697 -3.7769 -0.6695 10 8 5.2825 -3.4916 -1.2726 11 6 3.7676 -5.1978 -0.6696 12 1 3.3958 -5.4518 0.3230 13 7 4.8659 -6.1052 -1.0281 14 6 2.6360 -5.3388 -1.6896 15 6 2.0430 -6.7465 -1.6021 16 6 0.9280 -6.8852 -2.6064 17 1 0.6686 -6.0527 -3.2437 18 6 0.2397 -8.0752 -2.7124 19 7 -0.7330 -8.1963 -3.5892 20 14 0.6889 -9.5152 -1.6106 21 1 -0.1109 -9.4507 -0.3610 22 1 0.4000 -10.7885 -2.3179 23 1 2.1345 -9.4512 -1.2769 24 6 3.5705 -0.7203 1.2490 25 1 3.9335 0.3074 1.2488 26 6 4.0815 -1.4409 2.4982 27 6 2.0405 -0.7209 1.2493 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.6766 -0.2074 -2.1392 32 1 1.6768 -1.7489 -1.2493 33 1 3.9329 0.3071 -1.2498 34 1 3.9334 -1.2349 -2.1393 35 1 2.7824 -3.0510 0.4820 36 1 5.2281 -5.8900 -1.9448 37 1 5.5982 -6.0781 -0.3345 38 1 3.0282 -5.1715 -2.6928 39 1 1.8603 -4.6037 -1.4756 40 1 1.6508 -6.9138 -0.5989 41 1 2.8188 -7.4815 -1.8162 42 1 -1.2174 -9.0334 -3.6635 43 1 5.1715 -1.4402 2.4977 44 1 3.7179 -0.9273 3.3881 45 1 3.7189 -2.4688 2.4986 46 1 1.6772 -0.2074 2.1394 47 1 1.6775 -1.7487 1.2495 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424138466.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:43 Heat of formation + Delta-G solvation = -80.608185 kcal Electronic energy + Delta-G solvation = -23532.945132 eV Core-core repulsion = 20327.615583 eV Total energy + Delta-G solvation = -3205.329548 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.54461 -38.66565 -35.33031 -34.50230 -32.81939 -32.74325 -31.16659 -30.46511 -27.07116 -26.87912 -25.88159 -23.58598 -22.19505 -20.87443 -20.65874 -19.91205 -19.17230 -17.37130 -16.64246 -16.16768 -15.53032 -15.37817 -14.96830 -14.59024 -14.18072 -14.12119 -13.94966 -13.73437 -13.45200 -13.23522 -12.68386 -12.58208 -12.51234 -12.36617 -12.08880 -11.99526 -11.66264 -11.47882 -11.39921 -11.10620 -11.01010 -10.85155 -10.63515 -10.41443 -10.30581 -10.15567 -9.90232 -9.75707 -9.55283 -9.09332 -8.97083 -8.48902 -8.35593 -5.98469 -3.95881 2.78140 3.30843 3.36521 3.44528 3.52785 4.37683 4.45391 4.51737 4.52523 4.79767 4.81937 4.97330 5.02871 5.11178 5.19881 5.25294 5.35766 5.37008 5.40801 5.43402 5.44449 5.55527 5.60940 5.69144 5.71345 5.73828 5.81685 5.90397 5.95274 6.03897 6.11378 6.11572 6.20413 6.30241 6.35342 6.49328 6.58199 6.89458 7.29067 7.38089 7.57795 7.63645 7.69505 7.88043 8.34012 8.59274 9.06418 9.64765 11.15073 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017022 B = 0.004479 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.521508 B = 6249.292492 C = 7045.098454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.091 4.091 3 H 0.067 0.933 4 C -0.115 4.115 5 C -0.130 4.130 6 C 0.150 3.850 7 H 0.083 0.917 8 N -0.720 5.720 9 C 0.484 3.516 10 O -0.554 6.554 11 C 0.074 3.926 12 H 0.095 0.905 13 N -0.811 5.811 14 C -0.086 4.086 15 C -0.004 4.004 16 C -0.520 4.520 17 H 0.068 0.932 18 C 0.066 3.934 19 N -0.907 5.907 20 Si 0.879 3.121 21 H -0.279 1.279 22 H -0.290 1.290 23 H -0.260 1.260 24 C -0.098 4.098 25 H 0.081 0.919 26 C -0.147 4.147 27 C -0.111 4.111 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.068 0.932 35 H 0.400 0.600 36 H 0.349 0.651 37 H 0.334 0.666 38 H 0.058 0.942 39 H 0.058 0.942 40 H 0.007 0.993 41 H 0.034 0.966 42 H 0.262 0.738 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.065 0.935 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.699 17.471 12.358 22.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 H 0.085 0.915 4 C -0.153 4.153 5 C -0.168 4.168 6 C 0.045 3.955 7 H 0.101 0.899 8 N -0.373 5.373 9 C 0.270 3.730 10 O -0.432 6.432 11 C -0.042 4.042 12 H 0.113 0.887 13 N -0.339 5.339 14 C -0.124 4.124 15 C -0.042 4.042 16 C -0.558 4.558 17 H 0.087 0.913 18 C -0.135 4.135 19 N -0.546 5.546 20 Si 0.706 3.294 21 H -0.205 1.205 22 H -0.216 1.216 23 H -0.184 1.184 24 C -0.117 4.117 25 H 0.099 0.901 26 C -0.204 4.204 27 C -0.149 4.149 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.087 0.913 35 H 0.236 0.764 36 H 0.163 0.837 37 H 0.146 0.854 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.026 0.974 41 H 0.052 0.948 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.763 16.944 11.903 22.115 hybrid contribution 0.244 0.066 0.670 0.716 sum 8.007 17.010 12.573 22.617 Atomic orbital electron populations 1.21839 0.95091 1.02277 1.01442 1.21136 0.95570 0.99339 0.94866 0.91454 1.21582 0.95075 1.01354 0.97286 1.21906 0.96188 1.00268 0.98472 1.20915 0.99071 0.81306 0.94230 0.89901 1.46247 1.29235 1.08166 1.53614 1.22550 0.83622 0.89397 0.77447 1.90642 1.25693 1.83244 1.43603 1.21847 0.94844 0.85096 1.02400 0.88678 1.59032 1.13638 1.53290 1.07956 1.21442 0.93522 1.01059 0.96373 1.19486 0.96188 0.92068 0.96434 1.21183 1.15464 0.99652 1.19550 0.91335 1.25008 0.94660 0.98578 0.95217 1.69925 1.22655 1.26330 1.35705 0.86782 0.79931 0.81972 0.80712 1.20534 1.21617 1.18410 1.21412 0.96094 0.99906 0.94280 0.90059 1.21818 1.01031 1.00740 0.96854 1.21677 0.94322 1.00983 0.97901 0.92276 0.92920 0.92687 0.92008 0.91308 0.91516 0.91304 0.76421 0.83657 0.85412 0.92279 0.92331 0.97425 0.94809 0.92865 0.92691 0.92551 0.92396 0.91668 0.91798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.19 37.16 0.34 -0.94 16 2 C -0.09 -0.77 2.72 -90.62 -0.25 -1.02 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.12 -1.20 5.05 -26.73 -0.13 -1.33 16 5 C -0.13 -1.40 5.60 -26.73 -0.15 -1.55 16 6 C 0.15 1.58 2.23 -67.93 -0.15 1.43 16 7 H 0.08 1.01 7.58 -51.93 -0.39 0.62 16 8 N -0.72 -8.41 3.54 -53.80 -0.19 -8.60 16 9 C 0.48 7.17 7.03 -10.99 -0.08 7.10 16 10 O -0.55 -9.75 15.91 5.55 0.09 -9.67 16 11 C 0.07 1.16 3.15 -68.86 -0.22 0.94 16 12 H 0.10 1.37 8.14 -51.93 -0.42 0.94 16 13 N -0.81 -12.81 8.44 -5.65 -0.05 -12.86 16 14 C -0.09 -1.65 4.78 -26.74 -0.13 -1.78 16 15 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 16 C -0.52 -14.85 9.66 -34.44 -0.33 -15.18 16 17 H 0.07 2.10 7.99 -52.49 -0.42 1.69 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 19 N -0.91 -28.23 13.96 55.43 0.77 -27.46 16 20 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 21 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 24 C -0.10 -0.79 2.51 -90.62 -0.23 -1.02 16 25 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 26 C -0.15 -1.15 9.04 37.16 0.34 -0.81 16 27 C -0.11 -0.88 4.31 -26.73 -0.12 -1.00 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.83 7.61 -51.93 -0.39 0.43 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.40 4.18 6.65 -40.82 -0.27 3.91 16 36 H 0.35 5.69 8.58 -39.30 -0.34 5.35 16 37 H 0.33 4.55 9.06 -39.29 -0.36 4.20 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 40 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 41 H 0.03 0.83 6.81 -51.93 -0.35 0.48 16 42 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 43 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.06 0.48 7.45 -51.93 -0.39 0.09 16 46 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 47 H 0.06 0.54 6.51 -51.93 -0.34 0.20 16 LS Contribution 362.84 15.07 5.47 5.47 Total: -1.00 -32.08 362.84 -8.62 -40.70 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -8.73 Total: 8.63 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -1.31 Total: -13.54 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: 0.54 Total: -48.91 kcal Atomic # 8 Polarization: -9.75 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.08 -8.62 -40.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424138466.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.907 kcal (2) G-P(sol) polarization free energy of solvation -32.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds