Wall clock time and date at job start Tue Mar 31 2020 06:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 C 1.53000 * 109.46886 * 239.99566 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47317 * 59.99960 * 5 4 2 7 7 H 1.09000 * 109.47486 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.47075 * 59.99940 * 6 5 4 9 9 C 1.34777 * 119.99949 * 84.99839 * 8 6 5 10 10 O 1.21288 * 119.99883 * 0.02562 * 9 8 6 11 11 C 1.50696 * 120.00081 * 180.02562 * 9 8 6 12 12 H 1.08998 * 109.46853 * 40.00717 * 11 9 8 13 13 N 1.46910 * 109.46942 * 160.00299 * 11 9 8 14 14 C 1.52999 * 109.47144 * 280.00271 * 11 9 8 15 15 C 1.53003 * 109.47046 * 175.00326 * 14 11 9 16 16 C 1.50693 * 109.47344 * 180.02562 * 15 14 11 17 17 H 1.08003 * 120.00078 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00373 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00374 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99871 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47368 * 89.99975 * 20 18 16 22 22 H 1.48500 * 109.47093 * 210.00081 * 20 18 16 23 23 H 1.48499 * 109.46918 * 329.99829 * 20 18 16 24 24 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 25 25 H 1.09002 * 109.46935 * 299.99411 * 24 6 5 26 26 C 1.53002 * 109.46982 * 179.97438 * 24 6 5 27 27 C 1.52997 * 109.47452 * 59.99536 * 24 6 5 28 28 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47437 * 300.00603 * 1 2 3 30 30 H 1.09001 * 109.47109 * 59.99814 * 1 2 3 31 31 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 32 32 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 33 33 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 34 34 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 35 35 H 0.97000 * 119.99856 * 265.00497 * 8 6 5 36 36 H 1.00899 * 110.99715 * 296.04592 * 13 11 9 37 37 H 1.00892 * 111.00008 * 60.00084 * 13 11 9 38 38 H 1.09000 * 109.47160 * 294.99596 * 14 11 9 39 39 H 1.08995 * 109.47278 * 55.00003 * 14 11 9 40 40 H 1.09008 * 109.46968 * 300.00133 * 15 14 11 41 41 H 1.08995 * 109.47345 * 59.99718 * 15 14 11 42 42 H 0.96999 * 120.00274 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47067 * 299.99652 * 26 24 6 44 44 H 1.09000 * 109.47312 * 59.99678 * 26 24 6 45 45 H 1.09004 * 109.46930 * 179.97438 * 26 24 6 46 46 H 1.08993 * 109.47194 * 179.97438 * 27 24 6 47 47 H 1.09002 * 109.46695 * 59.99734 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0003 7 1 5.1695 -1.4435 0.0008 8 7 3.5906 -2.8245 0.0002 9 6 4.2671 -3.7788 -0.6693 10 8 5.2809 -3.4942 -1.2712 11 6 3.7640 -5.1993 -0.6700 12 1 2.6777 -5.1999 -0.7602 13 7 4.3499 -5.9257 -1.8045 14 6 4.1677 -5.8839 0.6374 15 6 3.5519 -7.2835 0.6914 16 6 3.9490 -7.9577 1.9793 17 1 4.5781 -7.4399 2.6882 18 6 3.5093 -9.2355 2.2526 19 7 3.8555 -9.8237 3.3768 20 14 2.4219 -10.1315 1.0261 21 1 3.2712 -10.8940 0.0761 22 1 1.5260 -11.0682 1.7508 23 1 1.6040 -9.1444 0.2764 24 6 3.5694 -0.7222 1.2496 25 1 3.9331 0.3054 1.2498 26 6 4.0785 -1.4441 2.4989 27 6 2.0394 -0.7216 1.2493 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6765 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.9333 -1.2354 -2.1390 34 1 3.9337 0.3056 -1.2487 35 1 2.7800 -3.0521 0.4818 36 1 4.0457 -5.5317 -2.6821 37 1 5.3569 -5.9393 -1.7440 38 1 5.2538 -5.9628 0.6859 39 1 3.8080 -5.2959 1.4816 40 1 2.4658 -7.2048 0.6427 41 1 3.9116 -7.8716 -0.1529 42 1 3.5464 -10.7228 3.5689 43 1 3.7144 -2.4715 2.4985 44 1 5.1685 -1.4449 2.4993 45 1 3.7154 -0.9300 3.3888 46 1 1.6761 -0.2082 2.1395 47 1 1.6758 -1.7491 1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424138467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:45 Heat of formation + Delta-G solvation = -80.680727 kcal Electronic energy + Delta-G solvation = -23419.794097 eV Core-core repulsion = 20214.461403 eV Total energy + Delta-G solvation = -3205.332694 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.56190 -38.69467 -35.33208 -34.55249 -32.80387 -32.74172 -31.24588 -30.46412 -27.08794 -26.86759 -25.92545 -23.61111 -22.23448 -20.92555 -20.65876 -19.90740 -19.21788 -17.37471 -16.61861 -16.17659 -15.68664 -15.35525 -14.96721 -14.55741 -14.26544 -14.10727 -14.00776 -13.76604 -13.43212 -13.28570 -12.69358 -12.59330 -12.54036 -12.32281 -12.10434 -12.03786 -11.70935 -11.59653 -11.42758 -11.08935 -10.97521 -10.85685 -10.73183 -10.44155 -10.29448 -10.21487 -9.98907 -9.69951 -9.56614 -9.10316 -8.98184 -8.49456 -8.35466 -5.98552 -3.96016 2.78129 3.30294 3.38178 3.44595 3.50058 4.35837 4.41390 4.46649 4.52132 4.75072 4.81605 4.90177 5.00914 5.08176 5.15638 5.22182 5.29560 5.36215 5.36420 5.42429 5.43316 5.50972 5.58369 5.67515 5.71433 5.73308 5.78598 5.84133 5.90298 5.96349 6.04185 6.11096 6.14510 6.23346 6.31896 6.49341 6.57204 6.89578 7.28922 7.40032 7.56059 7.62721 7.69204 7.87667 8.33858 8.59157 9.06269 9.64636 11.14976 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.004001 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.444431 B = 6996.098629 C = 7253.342939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 H 0.068 0.932 4 C -0.113 4.113 5 C -0.129 4.129 6 C 0.149 3.851 7 H 0.085 0.915 8 N -0.719 5.719 9 C 0.485 3.515 10 O -0.554 6.554 11 C 0.074 3.926 12 H 0.095 0.905 13 N -0.811 5.811 14 C -0.086 4.086 15 C -0.004 4.004 16 C -0.521 4.521 17 H 0.069 0.931 18 C 0.066 3.934 19 N -0.907 5.907 20 Si 0.882 3.118 21 H -0.277 1.277 22 H -0.291 1.291 23 H -0.265 1.265 24 C -0.098 4.098 25 H 0.081 0.919 26 C -0.150 4.150 27 C -0.112 4.112 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.400 0.600 36 H 0.334 0.666 37 H 0.349 0.651 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.012 0.988 41 H 0.029 0.971 42 H 0.262 0.738 43 H 0.061 0.939 44 H 0.056 0.944 45 H 0.056 0.944 46 H 0.066 0.934 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.479 22.173 -7.515 24.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 H 0.087 0.913 4 C -0.150 4.150 5 C -0.168 4.168 6 C 0.044 3.956 7 H 0.103 0.897 8 N -0.372 5.372 9 C 0.270 3.730 10 O -0.432 6.432 11 C -0.042 4.042 12 H 0.113 0.887 13 N -0.339 5.339 14 C -0.125 4.125 15 C -0.042 4.042 16 C -0.559 4.559 17 H 0.087 0.913 18 C -0.135 4.135 19 N -0.546 5.546 20 Si 0.710 3.290 21 H -0.203 1.203 22 H -0.217 1.217 23 H -0.189 1.189 24 C -0.116 4.116 25 H 0.099 0.901 26 C -0.207 4.207 27 C -0.149 4.149 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.236 0.764 36 H 0.146 0.854 37 H 0.163 0.837 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.030 0.970 41 H 0.047 0.953 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.085 0.915 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.160 21.555 -7.566 23.420 hybrid contribution -0.468 0.320 -0.509 0.762 sum -5.628 21.876 -8.075 23.988 Atomic orbital electron populations 1.21834 0.95230 1.01985 1.01494 1.21148 0.95422 0.99523 0.94942 0.91312 1.21561 0.95310 1.00853 0.97298 1.21901 0.95929 1.00440 0.98494 1.20919 0.99343 0.81267 0.94090 0.89736 1.46241 1.29351 1.08122 1.53522 1.22549 0.83799 0.89089 0.77557 1.90643 1.25079 1.83173 1.44285 1.21846 1.00243 0.86444 0.95648 0.88668 1.59032 1.15270 1.56189 1.03445 1.21450 1.01214 0.98560 0.91236 1.19481 0.95426 0.91569 0.97686 1.21182 1.31667 0.99905 1.03106 0.91327 1.25011 0.95969 0.97350 0.95162 1.69924 1.46151 1.14361 1.24178 0.86737 0.81031 0.79726 0.81510 1.20281 1.21733 1.18926 1.21410 0.95863 0.99882 0.94485 0.90110 1.21841 1.01309 1.01026 0.96544 1.21682 0.94589 1.00901 0.97755 0.92545 0.92739 0.92845 0.91798 0.92223 0.91542 0.91399 0.76412 0.85411 0.83651 0.92282 0.92275 0.96975 0.95266 0.92858 0.91960 0.92517 0.92497 0.91521 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.19 37.16 0.34 -0.68 16 2 C -0.09 -0.68 2.72 -90.62 -0.25 -0.92 16 3 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -0.95 5.05 -26.73 -0.13 -1.08 16 5 C -0.13 -1.24 5.60 -26.73 -0.15 -1.39 16 6 C 0.15 1.57 2.23 -67.93 -0.15 1.42 16 7 H 0.08 1.07 7.58 -51.93 -0.39 0.68 16 8 N -0.72 -8.41 3.54 -53.80 -0.19 -8.60 16 9 C 0.48 7.18 7.03 -10.99 -0.08 7.11 16 10 O -0.55 -9.76 15.91 5.55 0.09 -9.67 16 11 C 0.07 1.16 3.15 -68.86 -0.22 0.94 16 12 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 13 N -0.81 -12.79 8.44 -5.65 -0.05 -12.83 16 14 C -0.09 -1.66 4.78 -26.73 -0.13 -1.79 16 15 C 0.00 -0.10 3.93 -27.88 -0.11 -0.21 16 16 C -0.52 -14.86 9.66 -34.45 -0.33 -15.19 16 17 H 0.07 2.11 7.99 -52.48 -0.42 1.69 16 18 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 19 N -0.91 -28.22 13.96 55.43 0.77 -27.44 16 20 Si 0.88 22.09 27.47 -169.99 -4.67 17.42 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.26 -6.35 6.54 56.52 0.37 -5.98 16 24 C -0.10 -0.83 2.51 -90.62 -0.23 -1.06 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 26 C -0.15 -1.43 9.03 37.16 0.34 -1.10 16 27 C -0.11 -0.87 4.31 -26.73 -0.12 -0.98 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.59 7.60 -51.93 -0.39 0.20 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.40 4.19 6.65 -40.82 -0.27 3.92 16 36 H 0.33 4.55 9.06 -39.29 -0.36 4.20 16 37 H 0.35 5.67 8.58 -39.30 -0.34 5.33 16 38 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 40 H 0.01 0.28 7.20 -51.92 -0.37 -0.09 16 41 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 42 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 43 H 0.06 0.67 7.44 -51.93 -0.39 0.29 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.06 0.52 6.51 -51.93 -0.34 0.19 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -32.05 362.83 -8.62 -40.67 By element: Atomic # 1 Polarization: 16.83 SS G_CDS: -8.73 Total: 8.10 kcal Atomic # 6 Polarization: -11.80 SS G_CDS: -1.31 Total: -13.11 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: 0.54 Total: -48.88 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.67 Total: 17.42 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.05 -8.62 -40.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424138467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.011 kcal (2) G-P(sol) polarization free energy of solvation -32.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds