Wall clock time and date at job start Tue Mar 31 2020 06:24:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08992 * 109.47514 * 2 1 4 4 C 1.53000 * 109.46886 * 239.99566 * 2 1 3 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.47317 * 59.99960 * 5 4 2 7 7 H 1.09000 * 109.47486 * 180.02562 * 6 5 4 8 8 N 1.46506 * 109.47075 * 59.99940 * 6 5 4 9 9 C 1.34777 * 119.99949 * 84.99839 * 8 6 5 10 10 O 1.21288 * 119.99883 * 0.02562 * 9 8 6 11 11 C 1.50696 * 120.00081 * 180.02562 * 9 8 6 12 12 H 1.08998 * 109.46853 * 40.00717 * 11 9 8 13 13 N 1.46910 * 109.46942 * 160.00299 * 11 9 8 14 14 C 1.52999 * 109.47144 * 280.00271 * 11 9 8 15 15 C 1.53003 * 109.47046 * 175.00326 * 14 11 9 16 16 C 1.50693 * 109.47344 * 180.02562 * 15 14 11 17 17 H 1.08003 * 120.00078 * 359.97438 * 16 15 14 18 18 C 1.37871 * 120.00373 * 179.97438 * 16 15 14 19 19 N 1.31513 * 120.00374 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99871 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47368 * 89.99975 * 20 18 16 22 22 H 1.48500 * 109.47093 * 210.00081 * 20 18 16 23 23 H 1.48499 * 109.46918 * 329.99829 * 20 18 16 24 24 C 1.53005 * 109.47159 * 300.00546 * 6 5 4 25 25 H 1.09002 * 109.46935 * 299.99411 * 24 6 5 26 26 C 1.53002 * 109.46982 * 179.97438 * 24 6 5 27 27 C 1.52997 * 109.47452 * 59.99536 * 24 6 5 28 28 H 1.09002 * 109.47508 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47437 * 300.00603 * 1 2 3 30 30 H 1.09001 * 109.47109 * 59.99814 * 1 2 3 31 31 H 1.09002 * 109.47398 * 300.00496 * 4 2 1 32 32 H 1.09001 * 109.47194 * 60.00677 * 4 2 1 33 33 H 1.08996 * 109.47853 * 180.02562 * 5 4 2 34 34 H 1.09002 * 109.47153 * 300.00319 * 5 4 2 35 35 H 0.97000 * 119.99856 * 265.00497 * 8 6 5 36 36 H 1.00899 * 110.99715 * 296.04592 * 13 11 9 37 37 H 1.00892 * 111.00008 * 60.00084 * 13 11 9 38 38 H 1.09000 * 109.47160 * 294.99596 * 14 11 9 39 39 H 1.08995 * 109.47278 * 55.00003 * 14 11 9 40 40 H 1.09008 * 109.46968 * 300.00133 * 15 14 11 41 41 H 1.08995 * 109.47345 * 59.99718 * 15 14 11 42 42 H 0.96999 * 120.00274 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47067 * 299.99652 * 26 24 6 44 44 H 1.09000 * 109.47312 * 59.99678 * 26 24 6 45 45 H 1.09004 * 109.46930 * 179.97438 * 26 24 6 46 46 H 1.08993 * 109.47194 * 179.97438 * 27 24 6 47 47 H 1.09002 * 109.46695 * 59.99734 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7214 -1.2492 5 6 3.5699 -0.7219 -1.2489 6 6 4.0795 -1.4434 0.0003 7 1 5.1695 -1.4435 0.0008 8 7 3.5906 -2.8245 0.0002 9 6 4.2671 -3.7788 -0.6693 10 8 5.2809 -3.4942 -1.2712 11 6 3.7640 -5.1993 -0.6700 12 1 2.6777 -5.1999 -0.7602 13 7 4.3499 -5.9257 -1.8045 14 6 4.1677 -5.8839 0.6374 15 6 3.5519 -7.2835 0.6914 16 6 3.9490 -7.9577 1.9793 17 1 4.5781 -7.4399 2.6882 18 6 3.5093 -9.2355 2.2526 19 7 3.8555 -9.8237 3.3768 20 14 2.4219 -10.1315 1.0261 21 1 3.2712 -10.8940 0.0761 22 1 1.5260 -11.0682 1.7508 23 1 1.6040 -9.1444 0.2764 24 6 3.5694 -0.7222 1.2496 25 1 3.9331 0.3054 1.2498 26 6 4.0785 -1.4441 2.4989 27 6 2.0394 -0.7216 1.2493 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6765 -1.7490 -1.2492 32 1 1.6767 -0.2075 -2.1392 33 1 3.9333 -1.2354 -2.1390 34 1 3.9337 0.3056 -1.2487 35 1 2.7800 -3.0521 0.4818 36 1 4.0457 -5.5317 -2.6821 37 1 5.3569 -5.9393 -1.7440 38 1 5.2538 -5.9628 0.6859 39 1 3.8080 -5.2959 1.4816 40 1 2.4658 -7.2048 0.6427 41 1 3.9116 -7.8716 -0.1529 42 1 3.5464 -10.7228 3.5689 43 1 3.7144 -2.4715 2.4985 44 1 5.1685 -1.4449 2.4993 45 1 3.7154 -0.9300 3.3888 46 1 1.6761 -0.2082 2.1395 47 1 1.6758 -1.7491 1.2491 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424138467.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:45 Heat of formation + Delta-G solvation = -101.927892 kcal Electronic energy + Delta-G solvation = -23420.715443 eV Core-core repulsion = 20214.461403 eV Total energy + Delta-G solvation = -3206.254040 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.55749 -39.68835 -36.82198 -35.42000 -34.77661 -33.61923 -32.28067 -32.06206 -28.52841 -27.52913 -26.98360 -25.11936 -23.07552 -22.22605 -21.62789 -21.22026 -20.06528 -19.01338 -18.28057 -17.29583 -16.86101 -16.32335 -16.18584 -15.78370 -15.60498 -15.19187 -14.97457 -14.76254 -14.62757 -14.57654 -14.13193 -13.93311 -13.53846 -13.35676 -13.23546 -12.84518 -12.81370 -12.70725 -12.50424 -12.29316 -12.13694 -11.92487 -11.81808 -11.77791 -11.61069 -11.36726 -11.27839 -11.14845 -11.06696 -10.93600 -10.70819 -10.00250 -9.64244 -8.24672 -6.27870 1.41557 1.42736 1.55339 1.56876 2.25194 2.41555 3.12041 3.56228 3.62544 3.73893 3.77151 3.88407 4.07831 4.08701 4.18598 4.27349 4.40196 4.41242 4.50558 4.61436 4.65244 4.70565 4.76265 4.83183 4.85794 4.92415 4.99607 5.06022 5.09801 5.13350 5.15043 5.22046 5.25908 5.38293 5.41907 5.44970 5.50172 5.57159 5.62427 5.65749 5.72987 6.07666 6.32894 6.47396 6.56186 6.80608 7.20976 7.36721 8.92265 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.004001 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.444431 B = 6996.098629 C = 7253.342939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 H 0.078 0.922 4 C -0.109 4.109 5 C -0.123 4.123 6 C 0.147 3.853 7 H 0.061 0.939 8 N -0.705 5.705 9 C 0.487 3.513 10 O -0.584 6.584 11 C 0.083 3.917 12 H 0.116 0.884 13 N -0.818 5.818 14 C -0.077 4.077 15 C 0.003 3.997 16 C -0.531 4.531 17 H 0.028 0.972 18 C 0.004 3.996 19 N -0.955 5.955 20 Si 0.953 3.047 21 H -0.272 1.272 22 H -0.286 1.286 23 H -0.242 1.242 24 C -0.088 4.088 25 H 0.096 0.904 26 C -0.150 4.150 27 C -0.110 4.110 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.082 0.918 35 H 0.408 0.592 36 H 0.348 0.652 37 H 0.345 0.655 38 H 0.038 0.962 39 H 0.064 0.936 40 H 0.023 0.977 41 H 0.026 0.974 42 H 0.265 0.735 43 H 0.046 0.954 44 H 0.044 0.956 45 H 0.070 0.930 46 H 0.078 0.922 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.587 23.618 -8.825 26.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 H 0.096 0.904 4 C -0.147 4.147 5 C -0.162 4.162 6 C 0.042 3.958 7 H 0.079 0.921 8 N -0.357 5.357 9 C 0.273 3.727 10 O -0.464 6.464 11 C -0.033 4.033 12 H 0.134 0.866 13 N -0.347 5.347 14 C -0.116 4.116 15 C -0.034 4.034 16 C -0.569 4.569 17 H 0.046 0.954 18 C -0.193 4.193 19 N -0.596 5.596 20 Si 0.777 3.223 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.165 1.165 24 C -0.107 4.107 25 H 0.115 0.885 26 C -0.208 4.208 27 C -0.147 4.147 28 H 0.070 0.930 29 H 0.079 0.921 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.246 0.754 36 H 0.161 0.839 37 H 0.159 0.841 38 H 0.057 0.943 39 H 0.083 0.917 40 H 0.042 0.958 41 H 0.045 0.955 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.089 0.911 46 H 0.096 0.904 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -7.296 23.040 -8.875 25.746 hybrid contribution 0.263 -0.076 -0.013 0.275 sum -7.032 22.964 -8.888 25.608 Atomic orbital electron populations 1.21817 0.94676 1.01852 1.02066 1.21110 0.95795 0.99684 0.93904 0.90402 1.21536 0.94100 1.00670 0.98346 1.21838 0.96924 1.00720 0.96696 1.21018 0.98111 0.80730 0.95915 0.92110 1.46158 1.29062 1.08329 1.52155 1.22296 0.83483 0.89231 0.77720 1.90636 1.26368 1.83564 1.45842 1.21656 1.01308 0.86557 0.93736 0.86587 1.59021 1.15047 1.56495 1.04170 1.21238 0.99633 0.96905 0.93818 1.19364 0.96095 0.93306 0.94672 1.21556 1.30759 1.00214 1.04369 0.95381 1.25994 0.97692 0.98384 0.97187 1.70079 1.47973 1.15019 1.26535 0.85615 0.79160 0.78672 0.78877 1.19774 1.21241 1.16513 1.21364 0.96619 1.00102 0.92631 0.88547 1.21842 1.00621 1.00476 0.97819 1.21682 0.93552 1.00920 0.98582 0.93036 0.92092 0.92408 0.92661 0.91505 0.93779 0.89919 0.75418 0.83892 0.84145 0.94303 0.91723 0.95844 0.95521 0.92651 0.93478 0.93638 0.91095 0.90379 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.19 71.98 0.66 -0.97 16 2 C -0.09 -1.03 2.72 -10.79 -0.03 -1.06 16 3 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 4 C -0.11 -1.59 5.05 30.59 0.15 -1.44 16 5 C -0.12 -2.19 5.60 30.59 0.17 -2.02 16 6 C 0.15 2.96 2.23 44.99 0.10 3.06 16 7 H 0.06 1.55 7.58 -2.39 -0.02 1.53 16 8 N -0.70 -15.82 3.54 -442.51 -1.57 -17.39 16 9 C 0.49 14.14 7.03 87.66 0.62 14.75 16 10 O -0.58 -20.56 15.91 -3.06 -0.05 -20.60 16 11 C 0.08 2.50 3.15 44.17 0.14 2.64 16 12 H 0.12 3.03 8.14 -2.39 -0.02 3.02 16 13 N -0.82 -24.75 8.44 -171.79 -1.45 -26.20 16 14 C -0.08 -2.97 4.78 30.60 0.15 -2.82 16 15 C 0.00 0.14 3.93 29.85 0.12 0.26 16 16 C -0.53 -30.84 9.66 25.60 0.25 -30.59 16 17 H 0.03 1.80 7.99 -2.91 -0.02 1.77 16 18 C 0.00 0.21 5.47 84.65 0.46 0.68 16 19 N -0.95 -60.68 13.96 21.44 0.30 -60.38 16 20 Si 0.95 44.98 27.47 68.60 1.88 46.87 16 21 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 23 H -0.24 -10.45 6.54 99.48 0.65 -9.80 16 24 C -0.09 -1.35 2.51 -10.79 -0.03 -1.38 16 25 H 0.10 1.23 8.14 -2.39 -0.02 1.22 16 26 C -0.15 -2.72 9.03 71.98 0.65 -2.07 16 27 C -0.11 -1.42 4.31 30.59 0.13 -1.29 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.91 7.60 -2.39 -0.02 0.89 16 32 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.41 7.93 6.65 -92.71 -0.62 7.31 16 36 H 0.35 8.90 9.06 -89.69 -0.81 8.09 16 37 H 0.35 11.06 8.58 -89.70 -0.77 10.29 16 38 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 40 H 0.02 1.04 7.20 -2.38 -0.02 1.02 16 41 H 0.03 1.25 7.18 -2.39 -0.02 1.24 16 42 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 43 H 0.05 0.99 7.44 -2.39 -0.02 0.97 16 44 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 45 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 46 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 47 H 0.06 0.83 6.51 -2.39 -0.02 0.82 16 Total: -1.00 -70.01 362.83 1.36 -68.65 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: -1.30 Total: 31.30 kcal Atomic # 6 Polarization: -25.78 SS G_CDS: 3.54 Total: -22.24 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -2.72 Total: -103.97 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.05 Total: -20.60 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 1.88 Total: 46.87 kcal Total: -70.01 1.36 -68.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424138467.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.274 kcal (2) G-P(sol) polarization free energy of solvation -70.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds