Wall clock time and date at job start Tue Mar 31 2020 06:24:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46904 * 2 1 4 4 C 1.53003 * 109.47079 * 240.00011 * 2 1 3 5 5 C 1.53000 * 109.47104 * 300.00057 * 4 2 1 6 6 C 1.53000 * 109.47093 * 299.99840 * 5 4 2 7 7 H 1.08999 * 109.46866 * 300.00181 * 6 5 4 8 8 N 1.46501 * 109.47271 * 180.02562 * 6 5 4 9 9 C 1.34778 * 119.99693 * 85.00025 * 8 6 5 10 10 O 1.21284 * 120.00447 * 359.97438 * 9 8 6 11 11 C 1.50703 * 119.99500 * 180.02562 * 9 8 6 12 12 H 1.08989 * 109.47395 * 39.99846 * 11 9 8 13 13 N 1.46904 * 109.46604 * 159.99997 * 11 9 8 14 14 C 1.52994 * 109.47021 * 279.99392 * 11 9 8 15 15 C 1.52996 * 109.47119 * 175.00079 * 14 11 9 16 16 C 1.50702 * 109.47159 * 180.02562 * 15 14 11 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.52994 * 109.47153 * 59.99929 * 6 5 4 25 25 H 1.08999 * 109.47028 * 60.00352 * 24 6 5 26 26 C 1.53005 * 109.47311 * 180.02562 * 24 6 5 27 27 C 1.52991 * 109.47364 * 119.99946 * 2 1 3 28 28 H 1.09001 * 109.47459 * 299.99708 * 1 2 3 29 29 H 1.09002 * 109.47685 * 59.99904 * 1 2 3 30 30 H 1.09000 * 109.46904 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46793 * 59.99538 * 4 2 1 32 32 H 1.08999 * 109.47242 * 179.97438 * 4 2 1 33 33 H 1.09007 * 109.46947 * 179.97438 * 5 4 2 34 34 H 1.08999 * 109.47413 * 59.99687 * 5 4 2 35 35 H 0.96993 * 120.00105 * 264.99780 * 8 6 5 36 36 H 1.00900 * 111.00049 * 59.99874 * 13 11 9 37 37 H 1.00908 * 110.99698 * 183.95171 * 13 11 9 38 38 H 1.09004 * 109.46806 * 55.00342 * 14 11 9 39 39 H 1.09000 * 109.47828 * 295.00646 * 14 11 9 40 40 H 1.09004 * 109.47066 * 60.00422 * 15 14 11 41 41 H 1.08994 * 109.47405 * 300.00252 * 15 14 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.47034 * 60.00053 * 26 24 6 44 44 H 1.08992 * 109.46947 * 180.02562 * 26 24 6 45 45 H 1.09000 * 109.46924 * 300.00235 * 26 24 6 46 46 H 1.08999 * 109.47478 * 299.99883 * 27 2 1 47 47 H 1.08999 * 109.47475 * 179.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5299 -2.1637 -1.2493 6 6 2.0400 -2.8850 -0.0001 7 1 3.1300 -2.8850 -0.0001 8 7 1.5521 -4.2664 -0.0003 9 6 2.2295 -5.2201 -0.6698 10 8 3.2426 -4.9346 -1.2725 11 6 1.7273 -6.6410 -0.6706 12 1 0.6411 -6.6424 -0.7606 13 7 2.3138 -7.3669 -1.8051 14 6 2.1316 -7.3254 0.6366 15 6 1.5168 -8.7254 0.6907 16 6 1.9146 -9.3993 1.9786 17 1 2.5427 -8.8809 2.6879 18 6 1.4715 -10.6756 2.2543 19 7 0.7063 -11.3068 1.3907 20 14 1.9582 -11.5080 3.8541 21 1 2.8168 -10.5922 4.6474 22 1 0.7369 -11.8385 4.6317 23 1 2.7073 -12.7550 3.5554 24 6 1.5301 -2.1638 1.2492 25 1 0.4401 -2.1638 1.2492 26 6 2.0406 -2.8847 2.4985 27 6 2.0400 -0.7212 1.2492 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6765 -0.2074 -2.1392 32 1 3.1300 -0.7209 -1.2495 33 1 1.8929 -2.6775 -2.1395 34 1 0.4400 -2.1638 -1.2492 35 1 0.7418 -4.4947 0.4813 36 1 3.3209 -7.3797 -1.7446 37 1 1.9432 -8.3035 -1.8655 38 1 1.7715 -6.7376 1.4810 39 1 3.2178 -7.4034 0.6852 40 1 1.8770 -9.3132 -0.1537 41 1 0.4308 -8.6474 0.6422 42 1 0.3949 -12.2049 1.5845 43 1 3.1306 -2.8843 2.4982 44 1 1.6769 -2.3711 3.3883 45 1 1.6776 -3.9125 2.4987 46 1 1.6767 -0.2074 2.1392 47 1 3.1300 -0.7216 1.2489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424138468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:48 Heat of formation + Delta-G solvation = -83.515746 kcal Electronic energy + Delta-G solvation = -23134.687804 eV Core-core repulsion = 19929.232174 eV Total energy + Delta-G solvation = -3205.455630 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.33538 -38.74314 -35.48776 -34.59536 -32.84112 -32.68865 -30.64650 -29.86557 -27.13925 -26.77752 -25.85046 -23.90785 -22.31563 -21.26355 -20.57983 -19.84961 -18.81762 -17.20987 -16.44037 -16.18572 -15.36909 -15.05393 -14.78985 -14.56664 -14.44601 -14.14371 -13.90511 -13.63436 -13.25228 -13.03563 -12.89428 -12.71801 -12.34032 -12.19435 -12.08939 -11.99183 -11.69617 -11.48999 -11.23860 -11.07760 -11.02532 -10.93058 -10.66849 -10.54644 -10.41528 -10.22737 -9.98450 -9.85433 -9.25766 -9.15690 -8.85173 -8.44463 -8.15306 -6.08864 -4.11793 3.00755 3.25749 3.32845 3.34038 3.37943 4.39228 4.43042 4.47109 4.58893 4.81819 4.95200 5.07382 5.10805 5.21585 5.24240 5.27472 5.27623 5.33055 5.40222 5.51440 5.57797 5.61170 5.62618 5.71383 5.79049 5.80147 5.84515 5.91572 5.95847 6.03412 6.08843 6.18184 6.20155 6.30815 6.34529 6.53652 6.68535 6.88725 7.47155 7.52977 7.62521 7.78132 7.88522 7.93249 8.31293 8.55424 8.94476 9.53128 11.02073 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024277 B = 0.003480 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.101470 B = 8043.412594 C = 8742.249876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.094 4.094 3 H 0.069 0.931 4 C -0.111 4.111 5 C -0.131 4.131 6 C 0.153 3.847 7 H 0.084 0.916 8 N -0.730 5.730 9 C 0.527 3.473 10 O -0.539 6.539 11 C 0.074 3.926 12 H 0.095 0.905 13 N -0.831 5.831 14 C -0.136 4.136 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.099 4.099 25 H 0.077 0.923 26 C -0.149 4.149 27 C -0.106 4.106 28 H 0.052 0.948 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.068 0.932 34 H 0.065 0.935 35 H 0.399 0.601 36 H 0.345 0.655 37 H 0.353 0.647 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.261 0.739 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.010 21.727 -1.710 21.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.170 4.170 6 C 0.049 3.951 7 H 0.102 0.898 8 N -0.382 5.382 9 C 0.313 3.687 10 O -0.415 6.415 11 C -0.041 4.041 12 H 0.113 0.887 13 N -0.363 5.363 14 C -0.176 4.176 15 C -0.013 4.013 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.144 4.144 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.118 4.118 25 H 0.096 0.904 26 C -0.207 4.207 27 C -0.144 4.144 28 H 0.071 0.929 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.233 0.767 36 H 0.158 0.842 37 H 0.168 0.832 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.694 22.312 -2.644 22.479 hybrid contribution 0.132 -1.355 1.891 2.330 sum -0.562 20.957 -0.753 20.978 Atomic orbital electron populations 1.21946 0.95323 1.02232 1.01333 1.21133 0.95992 0.99049 0.95043 0.91303 1.21521 1.00776 0.95209 0.97416 1.21960 1.01043 0.95327 0.98628 1.20905 0.99775 0.80512 0.93950 0.89792 1.46068 1.29617 1.08177 1.54297 1.20856 0.83446 0.87213 0.77151 1.90623 1.25076 1.82842 1.42983 1.21477 1.00141 0.89940 0.92568 0.88737 1.58747 1.12092 1.22481 1.42942 1.22363 1.00950 0.99942 0.94346 1.19107 0.95949 0.88930 0.97348 1.21224 1.31152 0.99793 1.03915 0.92683 1.25018 0.95039 0.97404 0.96900 1.69963 1.34823 1.13089 1.35322 0.86534 0.78339 0.79489 0.83644 1.19757 1.20951 1.20949 1.21435 1.00966 0.94985 0.94447 0.90428 1.21844 1.01456 1.00764 0.96615 1.21583 1.00810 0.94335 0.97629 0.92921 0.92922 0.91927 0.91899 0.91837 0.91366 0.91589 0.76668 0.84187 0.83151 0.92605 0.92760 0.96418 0.96356 0.92949 0.92635 0.92624 0.91999 0.91597 0.91722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 8.50 37.16 0.32 -0.77 16 2 C -0.09 -0.71 3.19 -90.62 -0.29 -1.00 16 3 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.11 -0.98 5.45 -26.73 -0.15 -1.13 16 5 C -0.13 -1.40 5.22 -26.73 -0.14 -1.54 16 6 C 0.15 1.76 1.90 -67.93 -0.13 1.63 16 7 H 0.08 1.16 7.58 -51.93 -0.39 0.76 16 8 N -0.73 -9.37 4.39 -53.81 -0.24 -9.61 16 9 C 0.53 8.70 7.04 -10.98 -0.08 8.62 16 10 O -0.54 -10.55 15.91 5.55 0.09 -10.47 16 11 C 0.07 1.26 3.21 -68.86 -0.22 1.04 16 12 H 0.09 1.53 8.14 -51.94 -0.42 1.11 16 13 N -0.83 -14.53 8.94 -5.66 -0.05 -14.58 16 14 C -0.14 -2.67 4.78 -26.74 -0.13 -2.80 16 15 C 0.02 0.58 4.74 -27.88 -0.13 0.44 16 16 C -0.52 -14.33 9.11 -34.44 -0.31 -14.65 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 19 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 20 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 21 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C -0.10 -0.91 2.02 -90.62 -0.18 -1.09 16 25 H 0.08 0.66 6.43 -51.93 -0.33 0.33 16 26 C -0.15 -1.47 9.04 37.16 0.34 -1.13 16 27 C -0.11 -0.84 4.73 -26.73 -0.13 -0.97 16 28 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.48 4.81 -51.93 -0.25 0.23 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.66 6.43 -51.93 -0.33 0.33 16 35 H 0.40 4.42 8.39 -40.82 -0.34 4.08 16 36 H 0.34 6.14 8.58 -39.29 -0.34 5.80 16 37 H 0.35 6.19 7.55 -39.29 -0.30 5.89 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.67 7.45 -51.93 -0.39 0.29 16 46 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 361.89 15.07 5.45 5.45 Total: -1.00 -30.58 361.89 -8.85 -39.43 By element: Atomic # 1 Polarization: 19.14 SS G_CDS: -8.49 Total: 10.65 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -1.33 Total: -11.83 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: 0.45 Total: -49.48 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.58 -8.85 -39.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424138468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.087 kcal (2) G-P(sol) polarization free energy of solvation -30.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds