Wall clock time and date at job start Tue Mar 31 2020 06:24:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.46904 * 2 1 4 4 C 1.53003 * 109.47079 * 240.00011 * 2 1 3 5 5 C 1.53000 * 109.47104 * 300.00057 * 4 2 1 6 6 C 1.53000 * 109.47093 * 299.99840 * 5 4 2 7 7 H 1.08999 * 109.46866 * 300.00181 * 6 5 4 8 8 N 1.46501 * 109.47271 * 180.02562 * 6 5 4 9 9 C 1.34778 * 119.99693 * 85.00025 * 8 6 5 10 10 O 1.21284 * 120.00447 * 359.97438 * 9 8 6 11 11 C 1.50703 * 119.99500 * 180.02562 * 9 8 6 12 12 H 1.08989 * 109.47395 * 39.99846 * 11 9 8 13 13 N 1.46904 * 109.46604 * 159.99997 * 11 9 8 14 14 C 1.52994 * 109.47021 * 279.99392 * 11 9 8 15 15 C 1.52996 * 109.47119 * 175.00079 * 14 11 9 16 16 C 1.50702 * 109.47159 * 180.02562 * 15 14 11 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72211 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48496 * 109.47341 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.46983 * 120.00379 * 20 18 16 23 23 H 1.48503 * 109.47491 * 240.00192 * 20 18 16 24 24 C 1.52994 * 109.47153 * 59.99929 * 6 5 4 25 25 H 1.08999 * 109.47028 * 60.00352 * 24 6 5 26 26 C 1.53005 * 109.47311 * 180.02562 * 24 6 5 27 27 C 1.52991 * 109.47364 * 119.99946 * 2 1 3 28 28 H 1.09001 * 109.47459 * 299.99708 * 1 2 3 29 29 H 1.09002 * 109.47685 * 59.99904 * 1 2 3 30 30 H 1.09000 * 109.46904 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46793 * 59.99538 * 4 2 1 32 32 H 1.08999 * 109.47242 * 179.97438 * 4 2 1 33 33 H 1.09007 * 109.46947 * 179.97438 * 5 4 2 34 34 H 1.08999 * 109.47413 * 59.99687 * 5 4 2 35 35 H 0.96993 * 120.00105 * 264.99780 * 8 6 5 36 36 H 1.00900 * 111.00049 * 59.99874 * 13 11 9 37 37 H 1.00908 * 110.99698 * 183.95171 * 13 11 9 38 38 H 1.09004 * 109.46806 * 55.00342 * 14 11 9 39 39 H 1.09000 * 109.47828 * 295.00646 * 14 11 9 40 40 H 1.09004 * 109.47066 * 60.00422 * 15 14 11 41 41 H 1.08994 * 109.47405 * 300.00252 * 15 14 11 42 42 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.47034 * 60.00053 * 26 24 6 44 44 H 1.08992 * 109.46947 * 180.02562 * 26 24 6 45 45 H 1.09000 * 109.46924 * 300.00235 * 26 24 6 46 46 H 1.08999 * 109.47478 * 299.99883 * 27 2 1 47 47 H 1.08999 * 109.47475 * 179.97438 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5299 -2.1637 -1.2493 6 6 2.0400 -2.8850 -0.0001 7 1 3.1300 -2.8850 -0.0001 8 7 1.5521 -4.2664 -0.0003 9 6 2.2295 -5.2201 -0.6698 10 8 3.2426 -4.9346 -1.2725 11 6 1.7273 -6.6410 -0.6706 12 1 0.6411 -6.6424 -0.7606 13 7 2.3138 -7.3669 -1.8051 14 6 2.1316 -7.3254 0.6366 15 6 1.5168 -8.7254 0.6907 16 6 1.9146 -9.3993 1.9786 17 1 2.5427 -8.8809 2.6879 18 6 1.4715 -10.6756 2.2543 19 7 0.7063 -11.3068 1.3907 20 14 1.9582 -11.5080 3.8541 21 1 2.8168 -10.5922 4.6474 22 1 0.7369 -11.8385 4.6317 23 1 2.7073 -12.7550 3.5554 24 6 1.5301 -2.1638 1.2492 25 1 0.4401 -2.1638 1.2492 26 6 2.0406 -2.8847 2.4985 27 6 2.0400 -0.7212 1.2492 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6765 -0.2074 -2.1392 32 1 3.1300 -0.7209 -1.2495 33 1 1.8929 -2.6775 -2.1395 34 1 0.4400 -2.1638 -1.2492 35 1 0.7418 -4.4947 0.4813 36 1 3.3209 -7.3797 -1.7446 37 1 1.9432 -8.3035 -1.8655 38 1 1.7715 -6.7376 1.4810 39 1 3.2178 -7.4034 0.6852 40 1 1.8770 -9.3132 -0.1537 41 1 0.4308 -8.6474 0.6422 42 1 0.3949 -12.2049 1.5845 43 1 3.1306 -2.8843 2.4982 44 1 1.6769 -2.3711 3.3883 45 1 1.6776 -3.9125 2.4987 46 1 1.6767 -0.2074 2.1392 47 1 3.1300 -0.7216 1.2489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424138468.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:47 Heat of formation + Delta-G solvation = -103.172766 kcal Electronic energy + Delta-G solvation = -23135.540196 eV Core-core repulsion = 19929.232174 eV Total energy + Delta-G solvation = -3206.308022 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.40068 -39.82397 -37.06307 -35.64524 -34.83382 -33.52713 -31.68958 -31.53669 -28.39207 -27.52369 -27.06645 -25.51755 -23.36086 -22.30757 -21.96776 -21.13711 -19.66955 -18.76169 -18.03531 -17.49605 -16.55625 -16.17751 -15.99220 -15.93069 -15.67426 -15.53414 -14.90052 -14.71276 -14.62966 -14.35349 -14.01416 -13.80513 -13.61493 -13.44576 -13.11310 -12.95259 -12.88153 -12.69581 -12.67450 -12.50389 -12.24718 -11.96799 -11.81714 -11.75539 -11.72182 -11.30332 -11.27809 -11.15484 -11.00620 -10.62197 -10.56698 -9.98152 -9.63351 -8.21901 -6.32147 1.38316 1.39938 1.51734 1.65477 2.17251 2.39811 3.11810 3.61623 3.71473 3.77533 3.80579 3.94415 4.12317 4.13175 4.21838 4.25690 4.36763 4.43566 4.50121 4.56019 4.66470 4.69341 4.76779 4.84418 4.85598 4.97246 5.01043 5.08408 5.10575 5.11093 5.17064 5.25008 5.28674 5.39551 5.41569 5.46123 5.46872 5.60496 5.64971 5.66584 5.80433 6.07615 6.21050 6.47102 6.58760 6.83452 7.28865 7.36998 8.89070 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024277 B = 0.003480 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.101470 B = 8043.412594 C = 8742.249876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 H 0.081 0.919 4 C -0.109 4.109 5 C -0.125 4.125 6 C 0.153 3.847 7 H 0.059 0.941 8 N -0.714 5.714 9 C 0.528 3.472 10 O -0.573 6.573 11 C 0.080 3.920 12 H 0.108 0.892 13 N -0.830 5.830 14 C -0.119 4.119 15 C 0.030 3.970 16 C -0.544 4.544 17 H 0.054 0.946 18 C 0.005 3.995 19 N -0.927 5.927 20 Si 0.959 3.041 21 H -0.266 1.266 22 H -0.276 1.276 23 H -0.280 1.280 24 C -0.091 4.091 25 H 0.091 0.909 26 C -0.149 4.149 27 C -0.104 4.104 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.071 0.929 32 H 0.055 0.945 33 H 0.039 0.961 34 H 0.077 0.923 35 H 0.410 0.590 36 H 0.343 0.657 37 H 0.352 0.648 38 H 0.066 0.934 39 H 0.042 0.958 40 H 0.001 0.999 41 H 0.002 0.998 42 H 0.264 0.736 43 H 0.043 0.957 44 H 0.072 0.928 45 H 0.049 0.951 46 H 0.082 0.918 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.710 23.329 -0.376 23.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 H 0.100 0.900 4 C -0.147 4.147 5 C -0.164 4.164 6 C 0.048 3.952 7 H 0.077 0.923 8 N -0.365 5.365 9 C 0.314 3.686 10 O -0.452 6.452 11 C -0.035 4.035 12 H 0.126 0.874 13 N -0.361 5.361 14 C -0.159 4.159 15 C -0.007 4.007 16 C -0.582 4.582 17 H 0.072 0.928 18 C -0.194 4.194 19 N -0.567 5.567 20 Si 0.784 3.216 21 H -0.190 1.190 22 H -0.202 1.202 23 H -0.206 1.206 24 C -0.110 4.110 25 H 0.110 0.890 26 C -0.207 4.207 27 C -0.142 4.142 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.247 0.753 36 H 0.156 0.844 37 H 0.167 0.833 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.068 0.932 46 H 0.100 0.900 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.418 23.944 -1.292 24.020 hybrid contribution 0.342 -1.836 1.452 2.366 sum -1.076 22.107 0.160 22.134 Atomic orbital electron populations 1.21938 0.94654 1.02089 1.02061 1.21115 0.96457 0.99357 0.93836 0.90043 1.21516 1.00309 0.94090 0.98799 1.21893 1.01582 0.96173 0.96753 1.21024 0.98455 0.79807 0.95879 0.92291 1.45985 1.29356 1.08343 1.52836 1.20679 0.83170 0.87400 0.77330 1.90613 1.26558 1.83288 1.44721 1.21420 1.00832 0.90267 0.90992 0.87433 1.58762 1.11986 1.22418 1.42974 1.22108 0.99704 0.97756 0.96290 1.18969 0.95004 0.91105 0.95639 1.21645 1.31097 1.00388 1.05027 0.92753 1.25869 0.94986 0.98170 1.00327 1.70071 1.35846 1.13535 1.37206 0.85486 0.78222 0.78336 0.79533 1.18984 1.20202 1.20603 1.21401 1.01632 0.95354 0.92566 0.89046 1.21847 1.00771 1.00364 0.97699 1.21591 1.00540 0.93451 0.98591 0.91924 0.92560 0.92446 0.91031 0.92660 0.94258 0.90463 0.75337 0.84423 0.83324 0.91562 0.93953 0.98023 0.97923 0.92736 0.93746 0.90943 0.93228 0.89959 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 8.50 71.98 0.61 -1.11 16 2 C -0.09 -1.14 3.19 -10.80 -0.03 -1.17 16 3 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.11 -1.79 5.45 30.60 0.17 -1.63 16 5 C -0.13 -2.60 5.22 30.59 0.16 -2.44 16 6 C 0.15 3.40 1.90 44.99 0.09 3.49 16 7 H 0.06 1.65 7.58 -2.39 -0.02 1.63 16 8 N -0.71 -17.86 4.39 -442.53 -1.94 -19.80 16 9 C 0.53 17.41 7.04 87.66 0.62 18.03 16 10 O -0.57 -22.79 15.91 -3.04 -0.05 -22.84 16 11 C 0.08 2.73 3.21 44.17 0.14 2.87 16 12 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 13 N -0.83 -29.36 8.94 -171.81 -1.54 -30.89 16 14 C -0.12 -4.66 4.78 30.59 0.15 -4.51 16 15 C 0.03 1.48 4.74 29.85 0.14 1.62 16 16 C -0.54 -29.90 9.11 25.60 0.23 -29.67 16 17 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 18 C 0.00 0.27 5.46 84.66 0.46 0.74 16 19 N -0.93 -54.36 13.29 21.45 0.28 -54.07 16 20 Si 0.96 43.39 29.54 68.60 2.03 45.41 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 22 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 24 C -0.09 -1.48 2.02 -10.79 -0.02 -1.51 16 25 H 0.09 1.30 6.43 -2.39 -0.02 1.28 16 26 C -0.15 -2.70 9.04 71.98 0.65 -2.05 16 27 C -0.10 -1.41 4.73 30.59 0.14 -1.27 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.72 4.81 -2.39 -0.01 0.70 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.08 1.42 6.43 -2.39 -0.02 1.41 16 35 H 0.41 8.50 8.39 -92.71 -0.78 7.72 16 36 H 0.34 12.43 8.58 -89.69 -0.77 11.66 16 37 H 0.35 12.56 7.55 -89.69 -0.68 11.88 16 38 H 0.07 2.44 8.14 -2.38 -0.02 2.42 16 39 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.00 0.08 6.87 -2.38 -0.02 0.06 16 41 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 42 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 43 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.05 1.01 7.45 -2.39 -0.02 0.99 16 46 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 47 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -65.44 361.89 1.03 -64.41 By element: Atomic # 1 Polarization: 37.67 SS G_CDS: -1.26 Total: 36.40 kcal Atomic # 6 Polarization: -22.13 SS G_CDS: 3.50 Total: -18.62 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -3.19 Total: -104.76 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.05 Total: -22.84 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Total: -65.44 1.03 -64.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424138468.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.763 kcal (2) G-P(sol) polarization free energy of solvation -65.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.409 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds