Wall clock time and date at job start Tue Mar 31 2020 06:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.53000 * 109.47328 * 239.99633 * 2 1 3 5 5 C 1.53002 * 109.46911 * 300.00267 * 4 2 1 6 6 C 1.52997 * 109.47143 * 299.99808 * 5 4 2 7 7 H 1.09002 * 109.47153 * 299.99965 * 6 5 4 8 8 N 1.46510 * 109.47071 * 180.02562 * 6 5 4 9 9 C 1.34774 * 119.99612 * 84.99838 * 8 6 5 10 10 O 1.21279 * 120.00399 * 0.02562 * 9 8 6 11 11 C 1.50702 * 119.99311 * 180.02562 * 9 8 6 12 12 H 1.08996 * 109.47544 * 319.99656 * 11 9 8 13 13 N 1.46907 * 109.46685 * 200.00047 * 11 9 8 14 14 C 1.52992 * 109.47294 * 80.00138 * 11 9 8 15 15 C 1.53002 * 109.47318 * 184.99612 * 14 11 9 16 16 C 1.50697 * 109.47462 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00203 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00183 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99788 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00098 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46934 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47073 * 119.99284 * 20 18 16 23 23 H 1.48503 * 109.46729 * 239.99375 * 20 18 16 24 24 C 1.52992 * 109.47482 * 60.00181 * 6 5 4 25 25 H 1.09002 * 109.47103 * 59.99753 * 24 6 5 26 26 C 1.52997 * 109.47482 * 179.97438 * 24 6 5 27 27 C 1.52999 * 109.46961 * 300.00361 * 24 6 5 28 28 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47108 * 300.00256 * 1 2 3 30 30 H 1.09000 * 109.46870 * 60.00150 * 1 2 3 31 31 H 1.08992 * 109.47399 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.46724 * 59.99817 * 4 2 1 33 33 H 1.09004 * 109.46930 * 179.97438 * 5 4 2 34 34 H 1.09002 * 109.47067 * 59.99825 * 5 4 2 35 35 H 0.96995 * 119.99596 * 264.99857 * 8 6 5 36 36 H 1.00900 * 110.99519 * 176.04551 * 13 11 9 37 37 H 1.00904 * 110.99819 * 299.99608 * 13 11 9 38 38 H 1.08996 * 109.47551 * 304.99390 * 14 11 9 39 39 H 1.09001 * 109.47805 * 65.00121 * 14 11 9 40 40 H 1.08996 * 109.47364 * 300.00235 * 15 14 11 41 41 H 1.09007 * 109.46906 * 59.99855 * 15 14 11 42 42 H 0.96998 * 119.99622 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47153 * 59.99783 * 26 24 6 44 44 H 1.09001 * 109.46832 * 299.99974 * 26 24 6 45 45 H 1.09004 * 109.47261 * 179.97438 * 26 24 6 46 46 H 1.09001 * 109.47362 * 180.02562 * 27 24 6 47 47 H 1.09002 * 109.46716 * 299.99630 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -2.1638 -1.2491 6 6 2.0399 -2.8850 0.0002 7 1 3.1299 -2.8850 0.0002 8 7 1.5520 -4.2665 -0.0001 9 6 2.2293 -5.2201 -0.6695 10 8 3.2428 -4.9349 -1.2713 11 6 1.7270 -6.6410 -0.6702 12 1 1.3547 -6.8953 0.3222 13 7 2.8254 -7.5484 -1.0284 14 6 0.5959 -6.7816 -1.6908 15 6 0.0027 -8.1893 -1.6039 16 6 -1.1118 -8.3277 -2.6088 17 1 -1.3714 -7.4948 -3.2454 18 6 -1.8008 -9.5172 -2.7147 19 7 -1.4850 -10.5313 -1.9391 20 14 -3.1819 -9.6890 -3.9608 21 1 -3.3380 -8.4137 -4.7055 22 1 -2.8570 -10.7818 -4.9123 23 1 -4.4488 -10.0077 -3.2546 24 6 1.5299 -2.1638 1.2494 25 1 0.4399 -2.1637 1.2493 26 6 2.0394 -2.8853 2.4986 27 6 2.0399 -0.7213 1.2493 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.1299 -0.7217 -1.2490 32 1 1.6766 -0.2075 -2.1392 33 1 1.8930 -2.6776 -2.1393 34 1 0.4399 -2.1638 -1.2491 35 1 0.7416 -4.4946 0.4816 36 1 2.5310 -8.5119 -0.9732 37 1 3.1880 -7.3330 -1.9450 38 1 -0.1800 -6.0467 -1.4769 39 1 0.9885 -6.6142 -2.6937 40 1 0.7785 -8.9244 -1.8178 41 1 -0.3899 -8.3569 -0.6010 42 1 -1.9695 -11.3683 -2.0139 43 1 3.1294 -2.8858 2.4989 44 1 1.6756 -3.9128 2.4984 45 1 1.6764 -2.3712 3.3886 46 1 1.6770 -0.2075 2.1395 47 1 3.1299 -0.7213 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424138469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:51 Heat of formation + Delta-G solvation = -83.474302 kcal Electronic energy + Delta-G solvation = -23143.598322 eV Core-core repulsion = 19938.144490 eV Total energy + Delta-G solvation = -3205.453832 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.33438 -38.74117 -35.48799 -34.59219 -32.84082 -32.70749 -30.63011 -29.86639 -27.12810 -26.79708 -25.87543 -23.88253 -22.30645 -21.27676 -20.62296 -19.78886 -18.84722 -17.20149 -16.44152 -16.17527 -15.36148 -15.07499 -14.78629 -14.57202 -14.43771 -14.13562 -13.87873 -13.67579 -13.29573 -12.97295 -12.87342 -12.77257 -12.32668 -12.15699 -12.13690 -12.01280 -11.70178 -11.50270 -11.22704 -11.08247 -11.02337 -10.93197 -10.66725 -10.54664 -10.41229 -10.22338 -9.98346 -9.85445 -9.25747 -9.15754 -8.84457 -8.44419 -8.15625 -6.08809 -4.11764 3.00870 3.25821 3.32900 3.34042 3.37977 4.39206 4.42578 4.46858 4.59099 4.82257 4.95006 5.07237 5.11045 5.21109 5.26555 5.27627 5.27787 5.31521 5.41829 5.52049 5.54163 5.61153 5.62305 5.69909 5.79422 5.80368 5.82082 5.93535 5.93953 6.03873 6.08726 6.14332 6.21183 6.30380 6.36192 6.53663 6.68749 6.88751 7.47145 7.52988 7.62519 7.78139 7.88598 7.93218 8.31389 8.55469 8.94522 9.53209 11.02145 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020183 B = 0.003601 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.954498 B = 7773.921342 C = 8395.342314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.094 4.094 3 H 0.069 0.931 4 C -0.111 4.111 5 C -0.133 4.133 6 C 0.154 3.846 7 H 0.084 0.916 8 N -0.730 5.730 9 C 0.527 3.473 10 O -0.539 6.539 11 C 0.074 3.926 12 H 0.095 0.905 13 N -0.831 5.831 14 C -0.136 4.136 15 C 0.024 3.976 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.058 3.942 19 N -0.893 5.893 20 Si 0.892 3.108 21 H -0.273 1.273 22 H -0.283 1.283 23 H -0.283 1.283 24 C -0.100 4.100 25 H 0.078 0.922 26 C -0.148 4.148 27 C -0.105 4.105 28 H 0.062 0.938 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.399 0.601 36 H 0.353 0.647 37 H 0.345 0.655 38 H 0.055 0.945 39 H 0.054 0.946 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.261 0.739 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.065 0.935 47 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.140 19.561 7.627 21.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.112 4.112 3 H 0.087 0.913 4 C -0.149 4.149 5 C -0.171 4.171 6 C 0.049 3.951 7 H 0.102 0.898 8 N -0.382 5.382 9 C 0.313 3.687 10 O -0.415 6.415 11 C -0.041 4.041 12 H 0.113 0.887 13 N -0.363 5.363 14 C -0.176 4.176 15 C -0.013 4.013 16 C -0.561 4.561 17 H 0.073 0.927 18 C -0.143 4.143 19 N -0.532 5.532 20 Si 0.720 3.280 21 H -0.198 1.198 22 H -0.209 1.209 23 H -0.209 1.209 24 C -0.119 4.119 25 H 0.096 0.904 26 C -0.205 4.205 27 C -0.143 4.143 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.233 0.767 36 H 0.168 0.832 37 H 0.158 0.842 38 H 0.074 0.926 39 H 0.072 0.928 40 H 0.036 0.964 41 H 0.036 0.964 42 H 0.071 0.929 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.073 0.927 46 H 0.084 0.916 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.230 19.872 7.864 22.261 hybrid contribution -1.931 -0.627 -1.249 2.384 sum 4.300 19.244 6.615 20.799 Atomic orbital electron populations 1.21952 0.95268 1.02315 1.01365 1.21133 0.96035 0.99026 0.95006 0.91303 1.21523 1.00710 0.95240 0.97457 1.21973 1.01237 0.95311 0.98595 1.20904 0.99700 0.80515 0.93968 0.89765 1.46073 1.29492 1.08233 1.54370 1.20850 0.83017 0.87343 0.77449 1.90622 1.24838 1.82863 1.43205 1.21477 0.91969 0.89347 1.01330 0.88747 1.58750 1.34078 1.07303 1.36128 1.22363 0.95920 1.02180 0.97151 1.19108 0.95582 0.89186 0.97456 1.21222 1.16892 0.98139 1.19838 0.92690 1.25015 0.97408 0.95911 0.96000 1.69961 1.41282 1.03155 1.38806 0.86537 0.82020 0.78125 0.81343 1.19761 1.20936 1.20946 1.21435 1.01075 0.95022 0.94379 0.90354 1.21829 1.01402 1.00551 0.96712 1.21575 1.00755 0.94298 0.97665 0.91870 0.92939 0.92862 0.91864 0.91850 0.91391 0.91438 0.76671 0.83153 0.84189 0.92598 0.92763 0.96411 0.96358 0.92948 0.92651 0.92236 0.92658 0.91627 0.91751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.50 37.16 0.32 -0.85 16 2 C -0.09 -0.73 3.19 -90.62 -0.29 -1.02 16 3 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -1.03 5.45 -26.73 -0.15 -1.17 16 5 C -0.13 -1.50 5.22 -26.73 -0.14 -1.64 16 6 C 0.15 1.76 1.90 -67.93 -0.13 1.63 16 7 H 0.08 1.14 7.58 -51.93 -0.39 0.75 16 8 N -0.73 -9.38 4.38 -53.80 -0.24 -9.61 16 9 C 0.53 8.71 7.04 -10.99 -0.08 8.63 16 10 O -0.54 -10.56 15.91 5.56 0.09 -10.47 16 11 C 0.07 1.27 3.21 -68.86 -0.22 1.04 16 12 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 13 N -0.83 -14.54 8.94 -5.65 -0.05 -14.59 16 14 C -0.14 -2.68 4.78 -26.73 -0.13 -2.81 16 15 C 0.02 0.58 4.74 -27.88 -0.13 0.45 16 16 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 20 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 21 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C -0.10 -0.88 2.02 -90.63 -0.18 -1.07 16 25 H 0.08 0.67 6.43 -51.93 -0.33 0.33 16 26 C -0.15 -1.29 9.04 37.16 0.34 -0.96 16 27 C -0.10 -0.82 4.73 -26.73 -0.13 -0.94 16 28 H 0.06 0.52 4.81 -51.93 -0.25 0.27 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.07 0.74 6.43 -51.93 -0.33 0.41 16 35 H 0.40 4.43 8.39 -40.82 -0.34 4.08 16 36 H 0.35 6.19 7.55 -39.29 -0.30 5.90 16 37 H 0.34 6.14 8.58 -39.29 -0.34 5.80 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 40 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 41 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.55 7.44 -51.93 -0.39 0.17 16 45 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 361.88 15.07 5.45 5.45 Total: -1.00 -30.63 361.88 -8.85 -39.48 By element: Atomic # 1 Polarization: 19.13 SS G_CDS: -8.49 Total: 10.64 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -1.33 Total: -11.85 kcal Atomic # 7 Polarization: -49.96 SS G_CDS: 0.45 Total: -49.51 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.09 Total: -10.47 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.63 -8.85 -39.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424138469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.996 kcal (2) G-P(sol) polarization free energy of solvation -30.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds