Wall clock time and date at job start Tue Mar 31 2020 06:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47372 * 2 1 4 4 C 1.53000 * 109.47328 * 239.99633 * 2 1 3 5 5 C 1.53002 * 109.46911 * 300.00267 * 4 2 1 6 6 C 1.52997 * 109.47143 * 299.99808 * 5 4 2 7 7 H 1.09002 * 109.47153 * 299.99965 * 6 5 4 8 8 N 1.46510 * 109.47071 * 180.02562 * 6 5 4 9 9 C 1.34774 * 119.99612 * 84.99838 * 8 6 5 10 10 O 1.21279 * 120.00399 * 0.02562 * 9 8 6 11 11 C 1.50702 * 119.99311 * 180.02562 * 9 8 6 12 12 H 1.08996 * 109.47544 * 319.99656 * 11 9 8 13 13 N 1.46907 * 109.46685 * 200.00047 * 11 9 8 14 14 C 1.52992 * 109.47294 * 80.00138 * 11 9 8 15 15 C 1.53002 * 109.47318 * 184.99612 * 14 11 9 16 16 C 1.50697 * 109.47462 * 179.97438 * 15 14 11 17 17 H 1.07998 * 120.00203 * 359.97438 * 16 15 14 18 18 C 1.37878 * 120.00183 * 180.02562 * 16 15 14 19 19 N 1.31516 * 119.99788 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00098 * 180.02562 * 18 16 15 21 21 H 1.48502 * 109.46934 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47073 * 119.99284 * 20 18 16 23 23 H 1.48503 * 109.46729 * 239.99375 * 20 18 16 24 24 C 1.52992 * 109.47482 * 60.00181 * 6 5 4 25 25 H 1.09002 * 109.47103 * 59.99753 * 24 6 5 26 26 C 1.52997 * 109.47482 * 179.97438 * 24 6 5 27 27 C 1.52999 * 109.46961 * 300.00361 * 24 6 5 28 28 H 1.09001 * 109.47372 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47108 * 300.00256 * 1 2 3 30 30 H 1.09000 * 109.46870 * 60.00150 * 1 2 3 31 31 H 1.08992 * 109.47399 * 180.02562 * 4 2 1 32 32 H 1.09004 * 109.46724 * 59.99817 * 4 2 1 33 33 H 1.09004 * 109.46930 * 179.97438 * 5 4 2 34 34 H 1.09002 * 109.47067 * 59.99825 * 5 4 2 35 35 H 0.96995 * 119.99596 * 264.99857 * 8 6 5 36 36 H 1.00900 * 110.99519 * 176.04551 * 13 11 9 37 37 H 1.00904 * 110.99819 * 299.99608 * 13 11 9 38 38 H 1.08996 * 109.47551 * 304.99390 * 14 11 9 39 39 H 1.09001 * 109.47805 * 65.00121 * 14 11 9 40 40 H 1.08996 * 109.47364 * 300.00235 * 15 14 11 41 41 H 1.09007 * 109.46906 * 59.99855 * 15 14 11 42 42 H 0.96998 * 119.99622 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.47153 * 59.99783 * 26 24 6 44 44 H 1.09001 * 109.46832 * 299.99974 * 26 24 6 45 45 H 1.09004 * 109.47261 * 179.97438 * 26 24 6 46 46 H 1.09001 * 109.47362 * 180.02562 * 27 24 6 47 47 H 1.09002 * 109.46716 * 299.99630 * 27 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.5300 -2.1638 -1.2491 6 6 2.0399 -2.8850 0.0002 7 1 3.1299 -2.8850 0.0002 8 7 1.5520 -4.2665 -0.0001 9 6 2.2293 -5.2201 -0.6695 10 8 3.2428 -4.9349 -1.2713 11 6 1.7270 -6.6410 -0.6702 12 1 1.3547 -6.8953 0.3222 13 7 2.8254 -7.5484 -1.0284 14 6 0.5959 -6.7816 -1.6908 15 6 0.0027 -8.1893 -1.6039 16 6 -1.1118 -8.3277 -2.6088 17 1 -1.3714 -7.4948 -3.2454 18 6 -1.8008 -9.5172 -2.7147 19 7 -1.4850 -10.5313 -1.9391 20 14 -3.1819 -9.6890 -3.9608 21 1 -3.3380 -8.4137 -4.7055 22 1 -2.8570 -10.7818 -4.9123 23 1 -4.4488 -10.0077 -3.2546 24 6 1.5299 -2.1638 1.2494 25 1 0.4399 -2.1637 1.2493 26 6 2.0394 -2.8853 2.4986 27 6 2.0399 -0.7213 1.2493 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 3.1299 -0.7217 -1.2490 32 1 1.6766 -0.2075 -2.1392 33 1 1.8930 -2.6776 -2.1393 34 1 0.4399 -2.1638 -1.2491 35 1 0.7416 -4.4946 0.4816 36 1 2.5310 -8.5119 -0.9732 37 1 3.1880 -7.3330 -1.9450 38 1 -0.1800 -6.0467 -1.4769 39 1 0.9885 -6.6142 -2.6937 40 1 0.7785 -8.9244 -1.8178 41 1 -0.3899 -8.3569 -0.6010 42 1 -1.9695 -11.3683 -2.0139 43 1 3.1294 -2.8858 2.4989 44 1 1.6756 -3.9128 2.4984 45 1 1.6764 -2.3712 3.3886 46 1 1.6770 -0.2075 2.1395 47 1 3.1299 -0.7213 1.2493 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424138469.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:50 Heat of formation + Delta-G solvation = -103.169751 kcal Electronic energy + Delta-G solvation = -23144.452381 eV Core-core repulsion = 19938.144490 eV Total energy + Delta-G solvation = -3206.307891 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.40159 -39.82530 -37.06534 -35.64657 -34.83588 -33.52395 -31.68774 -31.54672 -28.39406 -27.51741 -27.08721 -25.50884 -23.32942 -22.36045 -21.98207 -21.09201 -19.70139 -18.76069 -18.03051 -17.47735 -16.57237 -16.18972 -16.02481 -15.90077 -15.68688 -15.53895 -14.83744 -14.72535 -14.66393 -14.38642 -13.94961 -13.82716 -13.61570 -13.44644 -13.12734 -12.96569 -12.88237 -12.69714 -12.66899 -12.50601 -12.24404 -11.96762 -11.82232 -11.75584 -11.72462 -11.29432 -11.28991 -11.15779 -11.00898 -10.62889 -10.56837 -9.97543 -9.64148 -8.22070 -6.32382 1.38200 1.39793 1.51577 1.65363 2.17290 2.39638 3.11647 3.61618 3.72762 3.75022 3.81723 3.94451 4.12159 4.12660 4.20975 4.26046 4.36084 4.43206 4.49917 4.56238 4.66174 4.68877 4.77362 4.84251 4.85968 4.97694 5.00232 5.07637 5.10182 5.11475 5.16297 5.24753 5.27711 5.39085 5.42020 5.46128 5.46396 5.60080 5.64703 5.66216 5.80202 6.07435 6.20883 6.46938 6.58712 6.83180 7.28785 7.36835 8.88917 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020183 B = 0.003601 C = 0.003334 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.954498 B = 7773.921342 C = 8395.342314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.089 4.089 3 H 0.082 0.918 4 C -0.109 4.109 5 C -0.129 4.129 6 C 0.154 3.846 7 H 0.062 0.938 8 N -0.714 5.714 9 C 0.528 3.472 10 O -0.573 6.573 11 C 0.080 3.920 12 H 0.108 0.892 13 N -0.830 5.830 14 C -0.119 4.119 15 C 0.030 3.970 16 C -0.544 4.544 17 H 0.054 0.946 18 C 0.006 3.994 19 N -0.926 5.926 20 Si 0.959 3.041 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.276 1.276 24 C -0.092 4.092 25 H 0.088 0.912 26 C -0.147 4.147 27 C -0.103 4.103 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.068 0.932 33 H 0.036 0.964 34 H 0.073 0.927 35 H 0.410 0.590 36 H 0.352 0.648 37 H 0.343 0.657 38 H 0.065 0.935 39 H 0.041 0.959 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.264 0.736 43 H 0.046 0.954 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.083 0.917 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.007 21.303 8.280 23.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.108 4.108 3 H 0.100 0.900 4 C -0.147 4.147 5 C -0.167 4.167 6 C 0.050 3.950 7 H 0.081 0.919 8 N -0.365 5.365 9 C 0.314 3.686 10 O -0.452 6.452 11 C -0.035 4.035 12 H 0.126 0.874 13 N -0.361 5.361 14 C -0.159 4.159 15 C -0.007 4.007 16 C -0.582 4.582 17 H 0.072 0.928 18 C -0.193 4.193 19 N -0.566 5.566 20 Si 0.784 3.216 21 H -0.190 1.190 22 H -0.206 1.206 23 H -0.202 1.202 24 C -0.111 4.111 25 H 0.107 0.893 26 C -0.204 4.204 27 C -0.141 4.141 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.247 0.753 36 H 0.167 0.833 37 H 0.156 0.844 38 H 0.084 0.916 39 H 0.060 0.940 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.070 0.930 45 H 0.091 0.909 46 H 0.102 0.898 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 5.077 21.641 8.541 23.813 hybrid contribution -1.559 -1.163 -1.436 2.418 sum 3.518 20.478 7.105 21.959 Atomic orbital electron populations 1.21945 0.94871 1.02001 1.02018 1.21118 0.96275 0.99429 0.93941 0.89960 1.21516 1.00392 0.93987 0.98818 1.21918 1.01434 0.96381 0.96998 1.21019 0.98539 0.79757 0.95726 0.91938 1.45990 1.29194 1.08382 1.52958 1.20675 0.82849 0.87479 0.77569 1.90611 1.26434 1.83249 1.44878 1.21420 0.90956 0.90057 1.01072 0.87400 1.58766 1.34069 1.07314 1.35975 1.22109 0.96825 0.99559 0.97394 1.18971 0.94546 0.91438 0.95760 1.21641 1.17826 0.98290 1.20448 0.92793 1.25863 0.99920 0.95618 0.97890 1.70068 1.42557 1.03686 1.40334 0.85491 0.78966 0.78248 0.78898 1.19025 1.20562 1.20182 1.21406 1.01549 0.95415 0.92737 0.89336 1.21829 1.00872 1.00372 0.97352 1.21584 1.00640 0.93427 0.98414 0.92613 0.91747 0.92830 0.92409 0.91361 0.94546 0.90878 0.75343 0.83322 0.84432 0.91612 0.93975 0.97995 0.97902 0.92725 0.93514 0.92951 0.90859 0.89811 0.92055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.50 71.98 0.61 -1.31 16 2 C -0.09 -1.19 3.19 -10.79 -0.03 -1.22 16 3 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 4 C -0.11 -1.91 5.45 30.60 0.17 -1.74 16 5 C -0.13 -2.86 5.22 30.59 0.16 -2.70 16 6 C 0.15 3.43 1.90 44.99 0.09 3.52 16 7 H 0.06 1.71 7.58 -2.39 -0.02 1.69 16 8 N -0.71 -17.87 4.38 -442.53 -1.94 -19.81 16 9 C 0.53 17.42 7.04 87.66 0.62 18.04 16 10 O -0.57 -22.79 15.91 -3.03 -0.05 -22.84 16 11 C 0.08 2.73 3.21 44.17 0.14 2.87 16 12 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 13 N -0.83 -29.35 8.94 -171.80 -1.54 -30.88 16 14 C -0.12 -4.69 4.78 30.59 0.15 -4.54 16 15 C 0.03 1.48 4.74 29.85 0.14 1.62 16 16 C -0.54 -29.98 9.11 25.60 0.23 -29.75 16 17 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 18 C 0.01 0.31 5.46 84.65 0.46 0.77 16 19 N -0.93 -54.36 13.29 21.45 0.28 -54.07 16 20 Si 0.96 43.42 29.54 68.60 2.03 45.44 16 21 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 C -0.09 -1.45 2.02 -10.80 -0.02 -1.47 16 25 H 0.09 1.26 6.43 -2.39 -0.02 1.25 16 26 C -0.15 -2.29 9.04 71.98 0.65 -1.64 16 27 C -0.10 -1.34 4.73 30.59 0.14 -1.20 16 28 H 0.05 0.79 4.81 -2.39 -0.01 0.78 16 29 H 0.06 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.04 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.07 1.53 6.43 -2.39 -0.02 1.51 16 35 H 0.41 8.50 8.39 -92.71 -0.78 7.73 16 36 H 0.35 12.55 7.55 -89.69 -0.68 11.88 16 37 H 0.34 12.44 8.58 -89.69 -0.77 11.67 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.00 0.09 6.87 -2.39 -0.02 0.08 16 41 H 0.00 0.14 8.14 -2.38 -0.02 0.12 16 42 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 43 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.05 0.89 7.44 -2.39 -0.02 0.87 16 45 H 0.07 0.90 8.14 -2.38 -0.02 0.88 16 46 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 47 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -65.50 361.88 1.03 -64.47 By element: Atomic # 1 Polarization: 37.70 SS G_CDS: -1.26 Total: 36.44 kcal Atomic # 6 Polarization: -22.26 SS G_CDS: 3.50 Total: -18.75 kcal Atomic # 7 Polarization: -101.57 SS G_CDS: -3.19 Total: -104.76 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: -0.05 Total: -22.84 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -65.50 1.03 -64.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424138469.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.699 kcal (2) G-P(sol) polarization free energy of solvation -65.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.471 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds