Wall clock time and date at job start Tue Mar 31 2020 06:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.78386 * 2 1 4 4 C 1.54245 * 109.62833 * 239.51304 * 2 1 3 5 5 C 1.45534 * 112.40255 * 160.30863 * 4 2 1 6 6 C 1.54241 * 112.40870 * 61.94099 * 5 4 2 7 7 C 1.50465 * 108.51499 * 280.00061 * 6 5 4 8 8 H 1.09003 * 108.87974 * 333.47685 * 7 6 5 9 9 N 1.46504 * 108.88106 * 214.93380 * 7 6 5 10 10 C 1.34775 * 119.99959 * 83.55172 * 9 7 6 11 11 O 1.21283 * 120.00078 * 0.02562 * 10 9 7 12 12 C 1.50707 * 119.99898 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.46844 * 40.00384 * 12 10 9 14 14 N 1.46897 * 109.46776 * 160.00621 * 12 10 9 15 15 C 1.52999 * 109.46980 * 280.00771 * 12 10 9 16 16 C 1.53006 * 109.46626 * 175.00014 * 15 12 10 17 17 C 1.50699 * 109.46866 * 179.97438 * 16 15 12 18 18 H 1.08003 * 119.99963 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00270 * 179.97438 * 17 16 15 20 20 N 1.31522 * 119.99835 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00496 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47183 * 60.00274 * 21 19 17 23 23 H 1.48496 * 109.47425 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47216 * 300.00267 * 21 19 17 25 25 C 1.54069 * 112.42177 * 94.20622 * 7 6 5 26 26 C 1.50477 * 109.62676 * 120.47840 * 2 1 3 27 27 H 1.09002 * 109.47215 * 180.48740 * 1 2 3 28 28 H 1.09002 * 109.46733 * 300.48448 * 1 2 3 29 29 H 1.08997 * 109.46863 * 60.48739 * 1 2 3 30 30 H 1.09004 * 108.89219 * 39.55523 * 4 2 1 31 31 H 1.08998 * 108.82101 * 281.01515 * 4 2 1 32 32 H 1.09002 * 108.89635 * 301.18763 * 5 4 2 33 33 H 1.08996 * 108.89351 * 182.69401 * 5 4 2 34 34 H 1.08999 * 109.62832 * 160.29235 * 6 5 4 35 35 H 1.08998 * 109.79125 * 39.80344 * 6 5 4 36 36 H 0.97004 * 119.99861 * 263.56717 * 9 7 6 37 37 H 1.00888 * 111.00369 * 60.00291 * 14 12 10 38 38 H 1.00900 * 110.99476 * 183.96192 * 14 12 10 39 39 H 1.08993 * 109.47839 * 55.00083 * 15 12 10 40 40 H 1.09000 * 109.47160 * 294.99645 * 15 12 10 41 41 H 1.09000 * 109.47050 * 299.99699 * 16 15 12 42 42 H 1.09001 * 109.46801 * 59.99811 * 16 15 12 43 43 H 0.96992 * 120.00038 * 180.02562 * 20 19 17 44 44 H 1.08992 * 108.81803 * 79.09434 * 25 7 6 45 45 H 1.09004 * 108.81208 * 197.37712 * 25 7 6 46 46 H 1.08997 * 108.87575 * 334.63459 * 26 2 1 47 47 H 1.08998 * 108.87550 * 93.17885 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8990 1.0256 0.0000 4 6 2.0482 -0.7371 -1.2520 5 6 3.4277 -0.3955 -1.5655 6 6 4.4028 -0.7947 -0.4390 7 6 4.3396 0.2515 0.6406 8 1 4.0334 1.1987 0.1964 9 7 5.6739 0.4118 1.2241 10 6 6.5774 1.2155 0.6292 11 8 6.2859 1.8065 -0.3890 12 6 7.9501 1.3799 1.2291 13 1 8.3034 0.4168 1.5973 14 7 8.8754 1.8819 0.2044 15 6 7.8840 2.3760 2.3886 16 6 9.2487 2.4492 3.0764 17 6 9.1838 3.4307 4.2181 18 1 8.2615 3.9507 4.4314 19 6 10.3017 3.6650 4.9903 20 7 11.4250 3.0322 4.7302 21 14 10.2215 4.8822 6.4049 22 1 9.1966 4.4373 7.3832 23 1 11.5460 4.9532 7.0727 24 1 9.8582 6.2243 5.8832 25 6 3.3474 -0.1181 1.7597 26 6 2.0355 -0.7189 1.2215 27 1 -0.3634 -1.0276 0.0087 28 1 -0.3633 0.5214 0.8856 29 1 -0.3633 0.5062 -0.8943 30 1 1.4178 -0.4753 -2.1018 31 1 1.9806 -1.8114 -1.0807 32 1 3.4970 0.6801 -1.7275 33 1 3.7187 -0.9082 -2.4822 34 1 5.4166 -0.8512 -0.8353 35 1 4.1158 -1.7626 -0.0282 36 1 5.9070 -0.0608 2.0385 37 1 8.5695 2.7744 -0.1529 38 1 9.8163 1.9394 0.5640 39 1 7.1323 2.0485 3.1066 40 1 7.6165 3.3612 2.0064 41 1 9.5163 1.4640 3.4586 42 1 10.0004 2.7768 2.3583 43 1 12.2113 3.1967 5.2737 44 1 3.8200 -0.8416 2.4239 45 1 3.1122 0.7795 2.3316 46 1 1.2762 -0.6654 2.0016 47 1 2.2078 -1.7651 0.9689 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424180868.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:58 Heat of formation + Delta-G solvation = -79.479431 kcal Electronic energy + Delta-G solvation = -22832.811810 eV Core-core repulsion = 19627.531208 eV Total energy + Delta-G solvation = -3205.280602 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.20165 -38.72542 -35.60112 -34.85696 -32.95951 -32.82622 -31.38701 -29.86746 -27.74923 -26.39600 -24.84958 -23.71123 -22.95983 -20.75454 -20.67283 -19.74033 -19.38667 -17.26260 -16.35991 -16.19832 -15.42075 -15.11228 -14.70677 -14.55908 -14.45610 -14.22934 -14.09569 -13.61374 -13.44627 -13.10137 -12.98171 -12.88273 -12.59670 -12.27721 -12.12229 -11.69720 -11.61617 -11.31240 -11.07317 -10.95179 -10.89116 -10.79433 -10.70228 -10.58529 -10.52650 -10.34429 -9.97701 -9.86075 -9.27805 -9.16523 -8.89792 -8.43648 -8.15403 -6.08388 -4.11618 3.00804 3.28346 3.32590 3.33274 3.35956 4.33727 4.39393 4.43884 4.66203 4.81886 4.94682 4.96569 5.07233 5.15353 5.22559 5.25191 5.27756 5.31316 5.36537 5.50999 5.51340 5.61543 5.63766 5.77714 5.78171 5.80122 5.91049 5.97387 5.98083 6.05086 6.07545 6.20555 6.28688 6.30131 6.31251 6.53701 6.69973 6.88774 7.46993 7.52758 7.62662 7.77716 7.88685 7.93349 8.31476 8.55293 8.94216 9.53199 11.02518 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025522 B = 0.003168 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1096.828371 B = 8836.146795 C = 9557.557732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.074 0.926 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.124 4.124 7 C 0.148 3.852 8 H 0.083 0.917 9 N -0.734 5.734 10 C 0.526 3.474 11 O -0.538 6.538 12 C 0.074 3.926 13 H 0.095 0.905 14 N -0.831 5.831 15 C -0.137 4.137 16 C 0.025 3.975 17 C -0.525 4.525 18 H 0.054 0.946 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.893 3.107 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.124 4.124 26 C -0.108 4.108 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.059 0.941 34 H 0.069 0.931 35 H 0.064 0.936 36 H 0.399 0.601 37 H 0.345 0.655 38 H 0.353 0.647 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.262 0.738 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.063 0.937 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.732 -9.847 -8.474 22.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 H 0.092 0.908 4 C -0.148 4.148 5 C -0.155 4.155 6 C -0.163 4.163 7 C 0.043 3.957 8 H 0.101 0.899 9 N -0.387 5.387 10 C 0.312 3.688 11 O -0.414 6.414 12 C -0.041 4.041 13 H 0.113 0.887 14 N -0.363 5.363 15 C -0.176 4.176 16 C -0.013 4.013 17 C -0.563 4.563 18 H 0.072 0.928 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.162 4.162 26 C -0.146 4.146 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.233 0.767 37 H 0.158 0.842 38 H 0.169 0.831 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.085 0.915 46 H 0.082 0.918 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.940 -10.081 -9.579 23.497 hybrid contribution 0.351 1.217 2.001 2.369 sum -18.589 -8.864 -7.578 21.944 Atomic orbital electron populations 1.21878 0.95179 1.01575 1.01609 1.20969 0.95313 1.00255 0.94848 0.90779 1.20566 0.96561 1.00155 0.97567 1.20394 0.94635 1.02194 0.98233 1.21760 1.00148 0.98616 0.95763 1.20780 0.81881 0.99750 0.93272 0.89859 1.46266 1.13548 1.49058 1.29835 1.20857 0.86670 0.77510 0.83719 1.90624 1.79649 1.46871 1.24251 1.21483 0.89846 1.00791 0.92029 0.88715 1.58741 1.05613 1.35206 1.36705 1.22368 1.02340 0.97293 0.95645 1.19097 0.89800 0.97353 0.95000 1.21153 0.96780 1.24248 1.14099 0.92785 1.25013 0.95448 0.96178 0.97670 1.69941 1.01223 1.42197 1.39879 0.86640 0.77174 0.81708 0.82389 1.20215 1.21213 1.20222 1.22152 0.95140 1.01506 0.97450 1.21343 0.95990 0.99856 0.97434 0.92805 0.92722 0.92780 0.92340 0.92305 0.91681 0.92234 0.91213 0.91695 0.76730 0.84182 0.83148 0.92594 0.92758 0.96356 0.96422 0.92821 0.91511 0.91545 0.91795 0.91895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 8.87 37.16 0.33 -0.67 16 2 C -0.10 -0.76 2.40 -91.23 -0.22 -0.98 16 3 H 0.07 0.69 6.98 -51.93 -0.36 0.33 16 4 C -0.11 -0.90 4.69 -29.60 -0.14 -1.04 16 5 C -0.12 -1.16 5.26 -29.60 -0.16 -1.31 16 6 C -0.12 -1.34 5.26 -27.35 -0.14 -1.49 16 7 C 0.15 1.69 1.97 -68.64 -0.13 1.56 16 8 H 0.08 1.14 6.03 -51.93 -0.31 0.82 16 9 N -0.73 -9.55 4.95 -54.49 -0.27 -9.82 16 10 C 0.53 8.74 6.81 -10.98 -0.07 8.67 16 11 O -0.54 -10.51 15.90 5.55 0.09 -10.42 16 12 C 0.07 1.27 3.21 -68.86 -0.22 1.05 16 13 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 14 N -0.83 -14.58 8.94 -5.65 -0.05 -14.63 16 15 C -0.14 -2.70 4.78 -26.73 -0.13 -2.83 16 16 C 0.02 0.60 4.74 -27.88 -0.13 0.47 16 17 C -0.52 -14.45 9.11 -34.44 -0.31 -14.77 16 18 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.12 13.29 55.43 0.74 -25.39 16 21 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C -0.12 -1.13 5.39 -25.65 -0.14 -1.26 16 26 C -0.11 -0.84 4.89 -27.47 -0.13 -0.97 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.36 8.11 -51.93 -0.42 -0.06 16 29 H 0.05 0.36 8.13 -51.93 -0.42 -0.06 16 30 H 0.06 0.45 7.97 -51.93 -0.41 0.03 16 31 H 0.06 0.45 7.47 -51.93 -0.39 0.06 16 32 H 0.06 0.75 7.47 -51.93 -0.39 0.36 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.91 7.74 -51.93 -0.40 0.51 16 35 H 0.06 0.61 6.99 -51.93 -0.36 0.25 16 36 H 0.40 4.42 8.44 -40.82 -0.34 4.07 16 37 H 0.35 6.15 8.58 -39.30 -0.34 5.82 16 38 H 0.35 6.21 7.55 -39.29 -0.30 5.91 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 43 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 44 H 0.07 0.55 7.91 -51.93 -0.41 0.14 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.06 0.45 7.68 -51.93 -0.40 0.05 16 47 H 0.06 0.47 6.63 -51.93 -0.34 0.12 16 LS Contribution 360.33 15.07 5.43 5.43 Total: -1.00 -30.69 360.33 -9.25 -39.94 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -8.46 Total: 10.63 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -1.70 Total: -12.03 kcal Atomic # 7 Polarization: -50.25 SS G_CDS: 0.42 Total: -49.84 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.09 Total: -10.42 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.69 -9.25 -39.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424180868.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.541 kcal (2) G-P(sol) polarization free energy of solvation -30.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds