Wall clock time and date at job start Tue Mar 31 2020 06:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.78043 * 2 1 4 4 C 1.54245 * 109.62587 * 239.52216 * 2 1 3 5 5 C 1.45537 * 112.40049 * 160.30910 * 4 2 1 6 6 C 1.54241 * 112.41027 * 61.94024 * 5 4 2 7 7 C 1.50480 * 108.51114 * 279.99760 * 6 5 4 8 8 H 1.08997 * 108.87490 * 333.47553 * 7 6 5 9 9 N 1.46500 * 108.87657 * 214.93391 * 7 6 5 10 10 C 1.34775 * 120.00146 * 83.55887 * 9 7 6 11 11 O 1.21281 * 119.99765 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99950 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.47433 * 320.00010 * 12 10 9 14 14 N 1.46904 * 109.47156 * 200.00053 * 12 10 9 15 15 C 1.52998 * 109.47303 * 80.00433 * 12 10 9 16 16 C 1.52999 * 109.47303 * 184.99896 * 15 12 10 17 17 C 1.50702 * 109.47525 * 179.97438 * 16 15 12 18 18 H 1.08002 * 119.99441 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00075 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00481 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99886 * 179.73007 * 19 17 16 22 22 H 1.48502 * 109.46964 * 270.27509 * 21 19 17 23 23 H 1.48505 * 109.47036 * 30.26897 * 21 19 17 24 24 H 1.48490 * 109.47395 * 150.27411 * 21 19 17 25 25 C 1.54066 * 112.41835 * 94.20537 * 7 6 5 26 26 C 1.50472 * 109.62672 * 120.48398 * 2 1 3 27 27 H 1.09000 * 109.46788 * 180.48070 * 1 2 3 28 28 H 1.09006 * 109.47111 * 300.47809 * 1 2 3 29 29 H 1.08994 * 109.47192 * 60.47989 * 1 2 3 30 30 H 1.08995 * 108.89396 * 39.55414 * 4 2 1 31 31 H 1.08997 * 108.81588 * 281.01099 * 4 2 1 32 32 H 1.08997 * 108.89847 * 301.18273 * 5 4 2 33 33 H 1.08996 * 108.89223 * 182.68945 * 5 4 2 34 34 H 1.08998 * 109.62925 * 160.29509 * 6 5 4 35 35 H 1.08999 * 109.79592 * 39.79726 * 6 5 4 36 36 H 0.97001 * 119.99850 * 263.55889 * 9 7 6 37 37 H 1.00898 * 111.00224 * 176.04105 * 14 12 10 38 38 H 1.00894 * 110.99996 * 299.99958 * 14 12 10 39 39 H 1.08995 * 109.47540 * 64.99877 * 15 12 10 40 40 H 1.09001 * 109.46719 * 304.99677 * 15 12 10 41 41 H 1.09009 * 109.47378 * 59.99763 * 16 15 12 42 42 H 1.08998 * 109.47458 * 300.00225 * 16 15 12 43 43 H 0.97005 * 119.99656 * 359.72741 * 20 19 17 44 44 H 1.09003 * 108.81202 * 79.09701 * 25 7 6 45 45 H 1.09000 * 108.81373 * 197.37452 * 25 7 6 46 46 H 1.08997 * 108.87582 * 334.63093 * 26 2 1 47 47 H 1.09001 * 108.87380 * 93.18245 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0481 -0.7369 -1.2521 5 6 3.4277 -0.3953 -1.5655 6 6 4.4028 -0.7946 -0.4392 7 6 4.3396 0.2516 0.6406 8 1 4.0334 1.1987 0.1965 9 7 5.6739 0.4117 1.2240 10 6 6.5774 1.2156 0.6292 11 8 6.2861 1.8061 -0.3893 12 6 7.9500 1.3799 1.2291 13 1 7.8678 1.4370 2.3145 14 7 8.5630 2.6136 0.7188 15 6 8.8208 0.1816 0.8459 16 6 10.1723 0.2856 1.5555 17 6 11.0298 -0.8950 1.1786 18 1 10.6490 -1.6443 0.5004 19 6 12.3003 -1.0184 1.6996 20 7 12.7642 -0.1057 2.5250 21 14 13.3604 -2.4857 1.2383 22 1 13.1208 -3.5914 2.2002 23 1 13.0107 -2.9377 -0.1324 24 1 14.7923 -2.0947 1.2804 25 6 3.3473 -0.1182 1.7596 26 6 2.0355 -0.7190 1.2214 27 1 -0.3633 -1.0276 0.0086 28 1 -0.3634 0.5213 0.8857 29 1 -0.3633 0.5063 -0.8942 30 1 1.4178 -0.4750 -2.1018 31 1 1.9806 -1.8112 -1.0808 32 1 3.4970 0.6803 -1.7275 33 1 3.7186 -0.9079 -2.4824 34 1 5.4166 -0.8510 -0.8355 35 1 4.1158 -1.7626 -0.0284 36 1 5.9070 -0.0608 2.0384 37 1 9.4574 2.7802 1.1550 38 1 8.6503 2.5852 -0.2859 39 1 8.9764 0.1757 -0.2329 40 1 8.3227 -0.7402 1.1463 41 1 10.0168 0.2915 2.6344 42 1 10.6704 1.2075 1.2553 43 1 12.2139 0.6564 2.7643 44 1 3.8202 -0.8418 2.4237 45 1 3.1122 0.7794 2.3316 46 1 1.2762 -0.6655 2.0015 47 1 2.2078 -1.7652 0.9686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424180869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:01 Heat of formation + Delta-G solvation = -83.236577 kcal Electronic energy + Delta-G solvation = -22915.963100 eV Core-core repulsion = 19710.519576 eV Total energy + Delta-G solvation = -3205.443524 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.25603 -38.78000 -35.75029 -34.93470 -33.11415 -32.95519 -31.43879 -29.74038 -27.75998 -26.28568 -24.71569 -23.63408 -22.97416 -21.03237 -20.73794 -19.81694 -19.46683 -17.44849 -16.52122 -16.37235 -15.50339 -15.10763 -14.70307 -14.57716 -14.56326 -14.14644 -13.77541 -13.68796 -13.52219 -13.32670 -13.08763 -12.98280 -12.62214 -12.30127 -12.27605 -11.69634 -11.65370 -11.40196 -11.25059 -10.97912 -10.84547 -10.81195 -10.61500 -10.55242 -10.37566 -10.25179 -10.13552 -10.11188 -9.36358 -8.95021 -8.71384 -8.40668 -8.24026 -6.43595 -4.13960 2.93353 3.26280 3.39237 3.42856 3.58701 4.30742 4.41050 4.48510 4.63153 4.78475 4.92102 4.92865 5.01241 5.09670 5.13539 5.22321 5.27128 5.33091 5.33587 5.47917 5.48796 5.50244 5.60418 5.67354 5.75139 5.76657 5.87568 5.93877 5.95398 6.02628 6.05915 6.16856 6.18726 6.25858 6.29513 6.38691 6.64469 6.72160 7.21711 7.33387 7.39243 7.69802 7.80996 8.11406 8.37893 8.48088 8.80366 9.58106 10.96855 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026148 B = 0.003169 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.570129 B = 8834.374830 C = 9230.774304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.073 0.927 4 C -0.111 4.111 5 C -0.117 4.117 6 C -0.126 4.126 7 C 0.148 3.852 8 H 0.084 0.916 9 N -0.734 5.734 10 C 0.526 3.474 11 O -0.537 6.537 12 C 0.072 3.928 13 H 0.094 0.906 14 N -0.830 5.830 15 C -0.129 4.129 16 C 0.011 3.989 17 C -0.604 4.604 18 H 0.048 0.952 19 C 0.016 3.984 20 N -0.911 5.911 21 Si 1.071 2.929 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.283 1.283 25 C -0.123 4.123 26 C -0.109 4.109 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.398 0.602 37 H 0.351 0.649 38 H 0.346 0.654 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.009 0.991 42 H 0.008 0.992 43 H 0.269 0.731 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.063 0.937 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.987 -1.235 -2.647 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.092 0.908 4 C -0.149 4.149 5 C -0.155 4.155 6 C -0.164 4.164 7 C 0.044 3.956 8 H 0.102 0.898 9 N -0.387 5.387 10 C 0.313 3.687 11 O -0.413 6.413 12 C -0.043 4.043 13 H 0.112 0.888 14 N -0.362 5.362 15 C -0.169 4.169 16 C -0.026 4.026 17 C -0.642 4.642 18 H 0.067 0.933 19 C -0.188 4.188 20 N -0.547 5.547 21 Si 0.899 3.101 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.209 1.209 25 C -0.162 4.162 26 C -0.147 4.147 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.232 0.768 37 H 0.166 0.834 38 H 0.159 0.841 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.027 0.973 42 H 0.027 0.973 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -22.350 -1.105 -2.838 22.557 hybrid contribution -0.589 -0.267 -0.135 0.660 sum -22.939 -1.373 -2.972 23.171 Atomic orbital electron populations 1.21878 0.95159 1.01619 1.01579 1.20965 0.95317 1.00195 0.94868 0.90827 1.20569 0.96549 1.00222 0.97547 1.20393 0.94632 1.02131 0.98296 1.21774 1.00218 0.98683 0.95770 1.20795 0.81748 0.99781 0.93310 0.89799 1.46260 1.13518 1.48930 1.29956 1.20777 0.86362 0.77374 0.84205 1.90628 1.79575 1.46689 1.24364 1.21503 0.90971 0.91857 0.99981 0.88787 1.58736 1.30736 1.34825 1.11860 1.22226 0.97870 0.95720 1.01056 1.19230 0.90919 0.97484 0.94976 1.22030 1.01684 1.09024 1.31479 0.93331 1.25859 0.96612 1.02144 0.94209 1.70772 1.40084 1.11462 1.32389 0.83513 0.76056 0.74733 0.75784 1.21404 1.21491 1.20911 1.22145 0.95197 1.01372 0.97443 1.21345 0.95897 0.99976 0.97442 0.92768 0.92757 0.92762 0.92306 0.92244 0.91721 0.92171 0.91216 0.91578 0.76753 0.83403 0.84057 0.92582 0.92412 0.97286 0.97338 0.92083 0.91512 0.91668 0.91790 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.87 37.16 0.33 -0.63 16 2 C -0.10 -0.75 2.40 -91.23 -0.22 -0.97 16 3 H 0.07 0.66 6.98 -51.93 -0.36 0.30 16 4 C -0.11 -0.92 4.69 -29.60 -0.14 -1.06 16 5 C -0.12 -1.19 5.26 -29.60 -0.16 -1.35 16 6 C -0.13 -1.43 5.26 -27.34 -0.14 -1.57 16 7 C 0.15 1.69 1.97 -68.63 -0.13 1.56 16 8 H 0.08 1.12 6.03 -51.93 -0.31 0.81 16 9 N -0.73 -9.53 4.95 -54.50 -0.27 -9.80 16 10 C 0.53 8.74 6.81 -10.99 -0.07 8.66 16 11 O -0.54 -10.47 15.90 5.56 0.09 -10.38 16 12 C 0.07 1.24 3.21 -68.87 -0.22 1.02 16 13 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 14 N -0.83 -14.46 8.94 -5.65 -0.05 -14.51 16 15 C -0.13 -2.57 4.78 -26.73 -0.13 -2.69 16 16 C 0.01 0.27 4.05 -27.88 -0.11 0.15 16 17 C -0.60 -16.88 9.11 -34.44 -0.31 -17.19 16 18 H 0.05 1.35 7.74 -52.49 -0.41 0.95 16 19 C 0.02 0.45 5.46 -17.82 -0.10 0.35 16 20 N -0.91 -27.40 13.65 55.43 0.76 -26.65 16 21 Si 1.07 25.10 29.90 -169.99 -5.08 20.02 16 22 H -0.29 -6.47 7.11 56.52 0.40 -6.06 16 23 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 25 C -0.12 -1.08 5.39 -25.65 -0.14 -1.21 16 26 C -0.11 -0.82 4.89 -27.47 -0.13 -0.96 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.05 0.34 8.11 -51.93 -0.42 -0.08 16 29 H 0.05 0.35 8.13 -51.93 -0.42 -0.07 16 30 H 0.06 0.46 7.96 -51.93 -0.41 0.04 16 31 H 0.06 0.47 7.47 -51.93 -0.39 0.08 16 32 H 0.06 0.75 7.47 -51.93 -0.39 0.36 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.97 7.74 -51.93 -0.40 0.57 16 35 H 0.07 0.67 6.99 -51.93 -0.36 0.31 16 36 H 0.40 4.42 8.44 -40.82 -0.34 4.07 16 37 H 0.35 6.06 7.55 -39.29 -0.30 5.77 16 38 H 0.35 6.15 8.58 -39.29 -0.34 5.82 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.01 0.22 8.01 -51.92 -0.42 -0.19 16 42 H 0.01 0.21 6.73 -51.93 -0.35 -0.14 16 43 H 0.27 7.98 7.22 -40.82 -0.29 7.69 16 44 H 0.07 0.54 7.91 -51.93 -0.41 0.13 16 45 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.06 0.43 7.68 -51.93 -0.40 0.03 16 47 H 0.06 0.48 6.63 -51.93 -0.34 0.14 16 LS Contribution 359.02 15.07 5.41 5.41 Total: -1.00 -31.57 359.02 -9.24 -40.80 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: -8.40 Total: 11.01 kcal Atomic # 6 Polarization: -14.22 SS G_CDS: -1.68 Total: -15.90 kcal Atomic # 7 Polarization: -51.40 SS G_CDS: 0.44 Total: -50.96 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: -5.08 Total: 20.02 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.57 -9.24 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424180869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.433 kcal (2) G-P(sol) polarization free energy of solvation -31.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds