Wall clock time and date at job start Tue Mar 31 2020 06:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.78043 * 2 1 4 4 C 1.54245 * 109.62587 * 239.52216 * 2 1 3 5 5 C 1.45537 * 112.40049 * 160.30910 * 4 2 1 6 6 C 1.54241 * 112.41027 * 61.94024 * 5 4 2 7 7 C 1.50480 * 108.51114 * 279.99760 * 6 5 4 8 8 H 1.08997 * 108.87490 * 333.47553 * 7 6 5 9 9 N 1.46500 * 108.87657 * 214.93391 * 7 6 5 10 10 C 1.34775 * 120.00146 * 83.55887 * 9 7 6 11 11 O 1.21281 * 119.99765 * 359.97438 * 10 9 7 12 12 C 1.50694 * 119.99950 * 180.02562 * 10 9 7 13 13 H 1.09002 * 109.47433 * 320.00010 * 12 10 9 14 14 N 1.46904 * 109.47156 * 200.00053 * 12 10 9 15 15 C 1.52998 * 109.47303 * 80.00433 * 12 10 9 16 16 C 1.52999 * 109.47303 * 184.99896 * 15 12 10 17 17 C 1.50702 * 109.47525 * 179.97438 * 16 15 12 18 18 H 1.08002 * 119.99441 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00075 * 180.02562 * 17 16 15 20 20 N 1.31514 * 120.00481 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99886 * 179.73007 * 19 17 16 22 22 H 1.48502 * 109.46964 * 270.27509 * 21 19 17 23 23 H 1.48505 * 109.47036 * 30.26897 * 21 19 17 24 24 H 1.48490 * 109.47395 * 150.27411 * 21 19 17 25 25 C 1.54066 * 112.41835 * 94.20537 * 7 6 5 26 26 C 1.50472 * 109.62672 * 120.48398 * 2 1 3 27 27 H 1.09000 * 109.46788 * 180.48070 * 1 2 3 28 28 H 1.09006 * 109.47111 * 300.47809 * 1 2 3 29 29 H 1.08994 * 109.47192 * 60.47989 * 1 2 3 30 30 H 1.08995 * 108.89396 * 39.55414 * 4 2 1 31 31 H 1.08997 * 108.81588 * 281.01099 * 4 2 1 32 32 H 1.08997 * 108.89847 * 301.18273 * 5 4 2 33 33 H 1.08996 * 108.89223 * 182.68945 * 5 4 2 34 34 H 1.08998 * 109.62925 * 160.29509 * 6 5 4 35 35 H 1.08999 * 109.79592 * 39.79726 * 6 5 4 36 36 H 0.97001 * 119.99850 * 263.55889 * 9 7 6 37 37 H 1.00898 * 111.00224 * 176.04105 * 14 12 10 38 38 H 1.00894 * 110.99996 * 299.99958 * 14 12 10 39 39 H 1.08995 * 109.47540 * 64.99877 * 15 12 10 40 40 H 1.09001 * 109.46719 * 304.99677 * 15 12 10 41 41 H 1.09009 * 109.47378 * 59.99763 * 16 15 12 42 42 H 1.08998 * 109.47458 * 300.00225 * 16 15 12 43 43 H 0.97005 * 119.99656 * 359.72741 * 20 19 17 44 44 H 1.09003 * 108.81202 * 79.09701 * 25 7 6 45 45 H 1.09000 * 108.81373 * 197.37452 * 25 7 6 46 46 H 1.08997 * 108.87582 * 334.63093 * 26 2 1 47 47 H 1.09001 * 108.87380 * 93.18245 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8989 1.0257 0.0000 4 6 2.0481 -0.7369 -1.2521 5 6 3.4277 -0.3953 -1.5655 6 6 4.4028 -0.7946 -0.4392 7 6 4.3396 0.2516 0.6406 8 1 4.0334 1.1987 0.1965 9 7 5.6739 0.4117 1.2240 10 6 6.5774 1.2156 0.6292 11 8 6.2861 1.8061 -0.3893 12 6 7.9500 1.3799 1.2291 13 1 7.8678 1.4370 2.3145 14 7 8.5630 2.6136 0.7188 15 6 8.8208 0.1816 0.8459 16 6 10.1723 0.2856 1.5555 17 6 11.0298 -0.8950 1.1786 18 1 10.6490 -1.6443 0.5004 19 6 12.3003 -1.0184 1.6996 20 7 12.7642 -0.1057 2.5250 21 14 13.3604 -2.4857 1.2383 22 1 13.1208 -3.5914 2.2002 23 1 13.0107 -2.9377 -0.1324 24 1 14.7923 -2.0947 1.2804 25 6 3.3473 -0.1182 1.7596 26 6 2.0355 -0.7190 1.2214 27 1 -0.3633 -1.0276 0.0086 28 1 -0.3634 0.5213 0.8857 29 1 -0.3633 0.5063 -0.8942 30 1 1.4178 -0.4750 -2.1018 31 1 1.9806 -1.8112 -1.0808 32 1 3.4970 0.6803 -1.7275 33 1 3.7186 -0.9079 -2.4824 34 1 5.4166 -0.8510 -0.8355 35 1 4.1158 -1.7626 -0.0284 36 1 5.9070 -0.0608 2.0384 37 1 9.4574 2.7802 1.1550 38 1 8.6503 2.5852 -0.2859 39 1 8.9764 0.1757 -0.2329 40 1 8.3227 -0.7402 1.1463 41 1 10.0168 0.2915 2.6344 42 1 10.6704 1.2075 1.2553 43 1 12.2139 0.6564 2.7643 44 1 3.8202 -0.8418 2.4237 45 1 3.1122 0.7794 2.3316 46 1 1.2762 -0.6655 2.0015 47 1 2.2078 -1.7652 0.9686 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424180869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:00 Heat of formation + Delta-G solvation = -103.995894 kcal Electronic energy + Delta-G solvation = -22916.863291 eV Core-core repulsion = 19710.519576 eV Total energy + Delta-G solvation = -3206.343715 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.37733 -39.78737 -37.31276 -36.04807 -35.09044 -33.73087 -32.35818 -31.54628 -28.65283 -27.70202 -25.96920 -25.00622 -23.91300 -22.71195 -21.60983 -21.07342 -20.29375 -19.17404 -18.23731 -17.42341 -16.52743 -16.17055 -15.92790 -15.90302 -15.66109 -15.42903 -15.31441 -14.99695 -14.86727 -14.31996 -14.12892 -14.09964 -13.71657 -13.49877 -13.41503 -13.06329 -12.98905 -12.64196 -12.37096 -12.19611 -12.07021 -11.94933 -11.92802 -11.75068 -11.53392 -11.36927 -11.23873 -11.07650 -10.89820 -10.67530 -10.56225 -10.09715 -9.74950 -8.69915 -6.41558 1.50918 1.57868 1.59384 1.77254 2.10418 2.54120 3.13696 3.53847 3.63670 3.70641 3.72790 3.97470 4.00092 4.09186 4.11885 4.16023 4.20253 4.35382 4.43275 4.48263 4.49760 4.65142 4.69871 4.76611 4.85866 4.87658 4.96942 5.03545 5.11533 5.13149 5.17325 5.20678 5.27715 5.33773 5.38639 5.41163 5.42910 5.47316 5.58053 5.61178 5.95363 5.96654 6.15996 6.35840 6.51609 6.57184 7.22177 7.38664 8.71120 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026148 B = 0.003169 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1070.570129 B = 8834.374830 C = 9230.774304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.095 4.095 3 H 0.058 0.942 4 C -0.109 4.109 5 C -0.111 4.111 6 C -0.123 4.123 7 C 0.149 3.851 8 H 0.062 0.938 9 N -0.719 5.719 10 C 0.526 3.474 11 O -0.570 6.570 12 C 0.079 3.921 13 H 0.109 0.891 14 N -0.829 5.829 15 C -0.112 4.112 16 C 0.014 3.986 17 C -0.621 4.621 18 H 0.045 0.955 19 C -0.035 4.035 20 N -0.935 5.935 21 Si 1.116 2.884 22 H -0.270 1.270 23 H -0.274 1.274 24 H -0.283 1.283 25 C -0.117 4.117 26 C -0.106 4.106 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.059 0.941 34 H 0.039 0.961 35 H 0.083 0.917 36 H 0.410 0.590 37 H 0.351 0.649 38 H 0.344 0.656 39 H 0.041 0.959 40 H 0.065 0.935 41 H -0.001 1.001 42 H -0.002 1.002 43 H 0.259 0.741 44 H 0.079 0.921 45 H 0.067 0.933 46 H 0.078 0.922 47 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.554 -2.805 -2.165 24.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.113 4.113 3 H 0.076 0.924 4 C -0.147 4.147 5 C -0.149 4.149 6 C -0.161 4.161 7 C 0.045 3.955 8 H 0.081 0.919 9 N -0.371 5.371 10 C 0.313 3.687 11 O -0.448 6.448 12 C -0.036 4.036 13 H 0.127 0.873 14 N -0.360 5.360 15 C -0.152 4.152 16 C -0.023 4.023 17 C -0.659 4.659 18 H 0.063 0.937 19 C -0.233 4.233 20 N -0.573 5.573 21 Si 0.938 3.062 22 H -0.196 1.196 23 H -0.199 1.199 24 H -0.208 1.208 25 C -0.155 4.155 26 C -0.144 4.144 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.247 0.753 37 H 0.165 0.835 38 H 0.157 0.843 39 H 0.060 0.940 40 H 0.084 0.916 41 H 0.018 0.982 42 H 0.016 0.984 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.086 0.914 46 H 0.097 0.903 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -23.959 -2.688 -2.330 24.221 hybrid contribution -0.132 0.255 -0.296 0.412 sum -24.091 -2.434 -2.625 24.355 Atomic orbital electron populations 1.21849 0.93982 1.02241 1.01863 1.20951 0.96285 0.99271 0.94825 0.92375 1.20540 0.95080 1.00879 0.98156 1.20355 0.95829 1.00792 0.97948 1.21729 0.98831 0.99534 0.96017 1.20913 0.81342 0.98913 0.94358 0.91938 1.46195 1.13577 1.47484 1.29853 1.20619 0.86541 0.77736 0.83834 1.90618 1.80139 1.48310 1.25752 1.21443 0.90971 0.90393 1.00832 0.87307 1.58753 1.30714 1.34824 1.11721 1.21986 0.96241 0.97494 0.99472 1.19134 0.92667 0.95826 0.94648 1.22464 1.02421 1.09925 1.31111 0.93660 1.27318 0.98400 1.04024 0.93586 1.70896 1.40304 1.12060 1.34012 0.82933 0.74427 0.72187 0.76659 1.19567 1.19860 1.20838 1.22120 0.95071 1.01974 0.96378 1.21347 0.95424 0.99979 0.97623 0.91929 0.92254 0.92793 0.91725 0.91175 0.93698 0.92275 0.94190 0.89810 0.75347 0.83451 0.84335 0.94012 0.91610 0.98231 0.98365 0.93187 0.90195 0.91447 0.90320 0.91198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.87 71.98 0.64 -0.93 16 2 C -0.09 -1.32 2.40 -11.19 -0.03 -1.35 16 3 H 0.06 1.00 6.98 -2.39 -0.02 0.99 16 4 C -0.11 -1.64 4.69 28.74 0.13 -1.51 16 5 C -0.11 -2.24 5.26 28.74 0.15 -2.09 16 6 C -0.12 -2.70 5.26 30.20 0.16 -2.54 16 7 C 0.15 3.27 1.97 44.54 0.09 3.36 16 8 H 0.06 1.68 6.03 -2.39 -0.01 1.67 16 9 N -0.72 -17.96 4.95 -444.72 -2.20 -20.16 16 10 C 0.53 17.35 6.81 87.66 0.60 17.95 16 11 O -0.57 -22.52 15.90 -3.03 -0.05 -22.57 16 12 C 0.08 2.68 3.21 44.17 0.14 2.82 16 13 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 14 N -0.83 -29.01 8.94 -171.80 -1.54 -30.55 16 15 C -0.11 -4.44 4.78 30.59 0.15 -4.30 16 16 C 0.01 0.70 4.05 29.85 0.12 0.83 16 17 C -0.62 -34.74 9.11 25.60 0.23 -34.51 16 18 H 0.05 2.51 7.74 -2.91 -0.02 2.48 16 19 C -0.04 -2.01 5.46 84.65 0.46 -1.54 16 20 N -0.94 -56.66 13.65 21.45 0.29 -56.36 16 21 Si 1.12 49.75 29.90 68.60 2.05 51.80 16 22 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 23 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 24 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 25 C -0.12 -1.78 5.39 31.29 0.17 -1.61 16 26 C -0.11 -1.32 4.89 30.12 0.15 -1.17 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.60 8.11 -2.38 -0.02 0.58 16 29 H 0.05 0.60 8.13 -2.39 -0.02 0.58 16 30 H 0.06 0.91 7.96 -2.39 -0.02 0.89 16 31 H 0.07 0.93 7.47 -2.39 -0.02 0.91 16 32 H 0.04 1.07 7.47 -2.39 -0.02 1.06 16 33 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.04 1.12 7.74 -2.39 -0.02 1.10 16 35 H 0.08 1.53 6.99 -2.39 -0.02 1.52 16 36 H 0.41 8.33 8.44 -92.71 -0.78 7.55 16 37 H 0.35 12.24 7.55 -89.70 -0.68 11.56 16 38 H 0.34 12.40 8.58 -89.70 -0.77 11.63 16 39 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 41 H 0.00 -0.03 8.01 -2.38 -0.02 -0.05 16 42 H 0.00 -0.09 6.73 -2.39 -0.02 -0.11 16 43 H 0.26 15.65 7.22 -92.70 -0.67 14.98 16 44 H 0.08 1.04 7.91 -2.39 -0.02 1.02 16 45 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.08 0.80 7.68 -2.39 -0.02 0.78 16 47 H 0.07 0.82 6.63 -2.39 -0.02 0.80 16 Total: -1.00 -67.78 359.02 0.56 -67.23 By element: Atomic # 1 Polarization: 38.38 SS G_CDS: -1.17 Total: 37.22 kcal Atomic # 6 Polarization: -29.77 SS G_CDS: 3.16 Total: -26.61 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -3.44 Total: -107.07 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.05 Total: -22.57 kcal Atomic # 14 Polarization: 49.75 SS G_CDS: 2.05 Total: 51.80 kcal Total: -67.78 0.56 -67.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424180869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.767 kcal (2) G-P(sol) polarization free energy of solvation -67.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds