Wall clock time and date at job start Tue Mar 31 2020 06:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09005 * 108.85108 * 2 1 4 4 C 1.54061 * 108.87925 * 241.53627 * 2 1 3 5 5 C 1.54066 * 112.81767 * 197.50634 * 4 2 1 6 6 C 1.50544 * 112.41361 * 318.27696 * 5 4 2 7 7 C 1.54253 * 108.48403 * 94.26749 * 6 5 4 8 8 H 1.08996 * 108.89305 * 40.58476 * 7 6 5 9 9 N 1.46499 * 108.89829 * 159.17776 * 7 6 5 10 10 C 1.34777 * 119.99665 * 276.67294 * 9 7 6 11 11 O 1.21283 * 119.99990 * 359.71991 * 10 9 7 12 12 C 1.50698 * 119.99538 * 179.72653 * 10 9 7 13 13 H 1.09004 * 109.47330 * 319.99391 * 12 10 9 14 14 N 1.46907 * 109.46627 * 199.99924 * 12 10 9 15 15 C 1.52998 * 109.47522 * 79.99747 * 12 10 9 16 16 C 1.52996 * 109.47058 * 184.99883 * 15 12 10 17 17 C 1.50700 * 109.46838 * 180.02562 * 16 15 12 18 18 H 1.08002 * 120.00466 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00190 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99887 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00366 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46843 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47386 * 120.00085 * 21 19 17 24 24 H 1.48507 * 109.46835 * 240.00232 * 21 19 17 25 25 C 1.45537 * 112.32457 * 279.88401 * 7 6 5 26 26 C 1.50469 * 108.87543 * 118.55788 * 2 1 3 27 27 H 1.08996 * 109.46906 * 301.43845 * 1 2 3 28 28 H 1.09001 * 109.46687 * 61.43931 * 1 2 3 29 29 H 1.08999 * 109.47045 * 181.43692 * 1 2 3 30 30 H 1.09004 * 108.81368 * 318.36830 * 4 2 1 31 31 H 1.09003 * 108.81433 * 76.75393 * 4 2 1 32 32 H 1.09002 * 108.87283 * 79.06393 * 5 4 2 33 33 H 1.09004 * 108.87674 * 197.60139 * 5 4 2 34 34 H 1.09006 * 109.72195 * 334.52818 * 6 5 4 35 35 H 1.09001 * 109.57884 * 213.92088 * 6 5 4 36 36 H 0.97001 * 119.99790 * 96.39007 * 9 7 6 37 37 H 1.00903 * 110.99748 * 299.99524 * 14 12 10 38 38 H 1.00897 * 111.00361 * 63.95474 * 14 12 10 39 39 H 1.08993 * 109.46811 * 304.99874 * 15 12 10 40 40 H 1.09003 * 109.47236 * 64.99934 * 15 12 10 41 41 H 1.09006 * 109.47191 * 299.99406 * 16 15 12 42 42 H 1.08996 * 109.47643 * 60.00177 * 16 15 12 43 43 H 0.96997 * 119.99981 * 179.97438 * 20 19 17 44 44 H 1.09001 * 108.89399 * 182.73472 * 25 7 6 45 45 H 1.09004 * 108.89357 * 301.32296 * 25 7 6 46 46 H 1.09001 * 109.62487 * 95.22467 * 26 2 1 47 47 H 1.08995 * 109.63182 * 334.64373 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8823 1.0316 0.0000 4 6 2.0286 -0.6948 -1.2815 5 6 3.5034 -1.1309 -1.1897 6 6 4.3701 -0.0894 -0.5337 7 6 4.4789 -0.4194 0.9692 8 1 4.5895 -1.4974 1.0866 9 7 5.6669 0.2413 1.5154 10 6 6.8770 -0.3392 1.3926 11 8 6.9818 -1.4109 0.8345 12 6 8.0999 0.3434 1.9491 13 1 8.0372 1.4145 1.7569 14 7 9.3013 -0.2006 1.3019 15 6 8.1783 0.0995 3.4574 16 6 9.3478 0.8938 4.0423 17 6 9.4254 0.6530 5.5280 18 1 8.7116 -0.0007 6.0072 19 6 10.4076 1.2674 6.2756 20 7 11.2771 2.0631 5.6921 21 14 10.5033 0.9696 8.1172 22 1 9.4180 0.0419 8.5257 23 1 11.8198 0.3709 8.4542 24 1 10.3477 2.2598 8.8360 25 6 3.3099 0.0187 1.7174 26 6 2.0169 -0.6806 1.2506 27 1 -0.3633 0.5360 0.8768 28 1 -0.3633 0.4913 -0.9026 29 1 -0.3633 -1.0273 0.0258 30 1 1.4126 -1.5748 -1.4666 31 1 1.9186 -0.0068 -2.1199 32 1 3.5627 -2.0543 -0.6135 33 1 3.8789 -1.3187 -2.1956 34 1 3.9213 0.8958 -0.6606 35 1 5.3625 -0.1035 -0.9844 36 1 5.5830 1.0984 1.9617 37 1 9.3822 -1.1930 1.4655 38 1 9.3043 0.0045 0.3140 39 1 7.2490 0.4227 3.9264 40 1 8.3302 -0.9632 3.6463 41 1 10.2772 0.5705 3.5733 42 1 9.1960 1.9565 3.8536 43 1 11.9679 2.4955 6.2181 44 1 3.4661 -0.1971 2.7743 45 1 3.1929 1.0950 1.5908 46 1 2.2238 -1.7298 1.0395 47 1 1.2575 -0.6036 2.0287 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424180870.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:03 Heat of formation + Delta-G solvation = -99.318010 kcal Electronic energy + Delta-G solvation = -22765.236130 eV Core-core repulsion = 19559.095263 eV Total energy + Delta-G solvation = -3206.140867 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.44734 -39.78302 -36.84954 -36.10460 -34.80561 -33.53927 -32.49364 -31.91479 -28.54070 -27.72906 -26.17772 -24.91508 -23.72866 -22.34535 -21.83191 -21.01393 -19.93085 -18.66508 -18.00953 -17.72361 -16.94160 -16.49416 -16.20798 -15.84844 -15.74429 -15.54125 -14.97269 -14.74985 -14.41587 -14.26111 -14.04137 -13.81580 -13.60612 -13.51907 -13.41301 -12.82317 -12.73641 -12.52478 -12.40079 -12.27111 -12.17449 -11.99888 -11.74090 -11.62853 -11.54835 -11.28746 -11.22659 -11.21787 -11.08675 -10.96031 -10.49354 -10.07202 -9.59847 -8.13960 -6.24195 1.41405 1.42406 1.53842 1.55978 2.19071 2.44776 3.19089 3.57335 3.60720 3.76349 3.81281 3.96422 4.06992 4.13362 4.16907 4.27909 4.32754 4.37198 4.42839 4.47965 4.72663 4.77980 4.78749 4.85330 4.91269 4.95068 5.05411 5.08568 5.15703 5.19068 5.24789 5.26473 5.27860 5.33817 5.44880 5.48449 5.54865 5.57626 5.62308 5.84772 5.98837 6.10691 6.30627 6.47735 6.56000 6.94785 7.19475 7.43997 8.97518 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.025717 B = 0.003108 C = 0.002864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.530444 B = 9005.422182 C = 9775.704188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.071 0.929 4 C -0.107 4.107 5 C -0.115 4.115 6 C -0.116 4.116 7 C 0.150 3.850 8 H 0.057 0.943 9 N -0.717 5.717 10 C 0.489 3.511 11 O -0.582 6.582 12 C 0.084 3.916 13 H 0.109 0.891 14 N -0.819 5.819 15 C -0.081 4.081 16 C 0.039 3.961 17 C -0.543 4.543 18 H 0.055 0.945 19 C 0.001 3.999 20 N -0.930 5.930 21 Si 0.960 3.040 22 H -0.264 1.264 23 H -0.281 1.281 24 H -0.277 1.277 25 C -0.128 4.128 26 C -0.103 4.103 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.054 0.946 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.042 0.958 36 H 0.412 0.588 37 H 0.344 0.656 38 H 0.346 0.654 39 H 0.067 0.933 40 H 0.040 0.960 41 H 0.005 0.995 42 H -0.005 1.005 43 H 0.262 0.738 44 H 0.065 0.935 45 H 0.082 0.918 46 H 0.060 0.940 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.605 -2.404 -13.310 26.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 H 0.089 0.911 4 C -0.145 4.145 5 C -0.153 4.153 6 C -0.155 4.155 7 C 0.046 3.954 8 H 0.075 0.925 9 N -0.368 5.368 10 C 0.275 3.725 11 O -0.462 6.462 12 C -0.031 4.031 13 H 0.127 0.873 14 N -0.348 5.348 15 C -0.119 4.119 16 C 0.002 3.998 17 C -0.581 4.581 18 H 0.073 0.927 19 C -0.197 4.197 20 N -0.571 5.571 21 Si 0.785 3.215 22 H -0.188 1.188 23 H -0.207 1.207 24 H -0.202 1.202 25 C -0.166 4.166 26 C -0.141 4.141 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.061 0.939 36 H 0.248 0.752 37 H 0.158 0.842 38 H 0.159 0.841 39 H 0.086 0.914 40 H 0.059 0.941 41 H 0.023 0.977 42 H 0.013 0.987 43 H 0.071 0.929 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.980 -2.567 -13.187 25.761 hybrid contribution -0.015 -0.344 0.504 0.610 sum -21.995 -2.912 -12.683 25.557 Atomic orbital electron populations 1.21929 0.94531 1.01928 1.02022 1.20968 0.96081 0.99939 0.94013 0.91093 1.21962 0.94317 1.00573 0.97604 1.21241 0.95452 0.98188 1.00389 1.21648 0.99242 1.00491 0.94088 1.19975 0.84736 0.97164 0.93559 0.92498 1.46357 1.06525 1.25107 1.58814 1.22298 0.86559 0.85466 0.78222 1.90628 1.86845 1.23241 1.45503 1.21644 0.85610 1.00053 0.95837 0.87297 1.58978 1.37205 1.20930 1.17698 1.21373 0.99972 0.99727 0.90823 1.18830 0.93590 0.93790 0.93599 1.21764 1.13747 1.27584 0.94969 0.92654 1.25914 0.95330 0.95004 1.03446 1.70114 1.17851 1.31633 1.37468 0.85475 0.78074 0.78153 0.79778 1.18791 1.20709 1.20232 1.20753 0.93947 1.02090 0.99787 1.21314 0.95642 0.99517 0.97677 0.92238 0.92466 0.92654 0.91744 0.91688 0.93009 0.92269 0.90077 0.93896 0.75192 0.84217 0.84120 0.91433 0.94111 0.97689 0.98707 0.92926 0.91658 0.89990 0.92133 0.90217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 8.79 71.98 0.63 -0.82 16 2 C -0.09 -1.08 2.21 -11.25 -0.02 -1.11 16 3 H 0.07 0.84 6.62 -2.38 -0.02 0.82 16 4 C -0.11 -1.37 5.23 31.31 0.16 -1.21 16 5 C -0.11 -1.96 5.32 30.16 0.16 -1.80 16 6 C -0.12 -2.24 5.19 30.22 0.16 -2.09 16 7 C 0.15 3.15 1.96 43.14 0.08 3.24 16 8 H 0.06 1.51 6.87 -2.39 -0.02 1.50 16 9 N -0.72 -16.99 5.01 -451.45 -2.26 -19.26 16 10 C 0.49 15.15 6.85 87.66 0.60 15.75 16 11 O -0.58 -21.48 15.90 -3.04 -0.05 -21.53 16 12 C 0.08 2.82 3.15 44.17 0.14 2.96 16 13 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 14 N -0.82 -28.30 8.44 -171.79 -1.45 -29.75 16 15 C -0.08 -3.27 4.78 30.59 0.15 -3.12 16 16 C 0.04 2.04 4.86 29.85 0.15 2.19 16 17 C -0.54 -30.97 9.11 25.60 0.23 -30.74 16 18 H 0.06 3.05 7.74 -2.91 -0.02 3.03 16 19 C 0.00 0.04 5.46 84.65 0.46 0.51 16 20 N -0.93 -56.97 13.29 21.45 0.28 -56.68 16 21 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 22 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 23 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 24 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 25 C -0.13 -2.02 4.61 28.74 0.13 -1.89 16 26 C -0.10 -1.39 5.13 30.20 0.15 -1.23 16 27 H 0.06 0.55 8.08 -2.39 -0.02 0.53 16 28 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.78 7.98 -2.38 -0.02 0.76 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 1.00 6.63 -2.39 -0.02 0.98 16 33 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 34 H 0.08 1.31 6.96 -2.38 -0.02 1.30 16 35 H 0.04 1.03 7.95 -2.39 -0.02 1.01 16 36 H 0.41 8.00 8.57 -92.71 -0.79 7.21 16 37 H 0.34 12.23 8.58 -89.69 -0.77 11.46 16 38 H 0.35 10.29 9.06 -89.70 -0.81 9.48 16 39 H 0.07 2.51 8.14 -2.39 -0.02 2.50 16 40 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.00 0.27 7.75 -2.38 -0.02 0.25 16 42 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 43 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 44 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.08 1.08 7.46 -2.38 -0.02 1.06 16 46 H 0.06 0.92 6.98 -2.39 -0.02 0.90 16 47 H 0.08 0.93 7.67 -2.39 -0.02 0.91 16 Total: -1.00 -68.55 362.62 0.32 -68.23 By element: Atomic # 1 Polarization: 33.13 SS G_CDS: -1.42 Total: 31.72 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 3.19 Total: -19.35 kcal Atomic # 7 Polarization: -102.26 SS G_CDS: -3.43 Total: -105.69 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.05 Total: -21.53 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Total: -68.55 0.32 -68.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424180870.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.083 kcal (2) G-P(sol) polarization free energy of solvation -68.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds