Wall clock time and date at job start Tue Mar 31 2020 06:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 108.85416 * 2 1 4 4 C 1.54065 * 108.87693 * 241.53146 * 2 1 3 5 5 C 1.54066 * 112.81475 * 197.50553 * 4 2 1 6 6 C 1.50478 * 112.50044 * 318.28696 * 5 4 2 7 7 C 1.54242 * 108.52284 * 94.15310 * 6 5 4 8 8 H 1.09001 * 108.82125 * 40.71219 * 7 6 5 9 9 N 1.46497 * 108.89652 * 159.26622 * 7 6 5 10 10 C 1.34781 * 119.99716 * 277.88226 * 9 7 6 11 11 O 1.21286 * 119.99983 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00160 * 179.97438 * 10 9 7 13 13 H 1.09002 * 109.46753 * 39.99710 * 12 10 9 14 14 N 1.46898 * 109.47192 * 159.99754 * 12 10 9 15 15 C 1.52992 * 109.47482 * 279.99980 * 12 10 9 16 16 C 1.52997 * 109.47482 * 174.99860 * 15 12 10 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47094 * 90.00289 * 21 19 17 23 23 H 1.48505 * 109.47195 * 210.00171 * 21 19 17 24 24 H 1.48493 * 109.47449 * 330.00136 * 21 19 17 25 25 C 1.45545 * 112.40114 * 280.01527 * 7 6 5 26 26 C 1.50477 * 108.87573 * 118.55877 * 2 1 3 27 27 H 1.09000 * 109.47053 * 301.44147 * 1 2 3 28 28 H 1.09003 * 109.46803 * 61.43933 * 1 2 3 29 29 H 1.08995 * 109.47290 * 181.44031 * 1 2 3 30 30 H 1.08996 * 108.81478 * 318.37216 * 4 2 1 31 31 H 1.09005 * 108.81205 * 76.76050 * 4 2 1 32 32 H 1.09005 * 108.87367 * 79.06446 * 5 4 2 33 33 H 1.09000 * 108.87810 * 197.60548 * 5 4 2 34 34 H 1.08994 * 109.62974 * 334.43840 * 6 5 4 35 35 H 1.09001 * 109.62265 * 213.86018 * 6 5 4 36 36 H 0.96994 * 120.00502 * 97.87359 * 9 7 6 37 37 H 1.00899 * 111.00057 * 59.99855 * 14 12 10 38 38 H 1.00898 * 110.99947 * 183.96241 * 14 12 10 39 39 H 1.09002 * 109.47103 * 54.99613 * 15 12 10 40 40 H 1.08998 * 109.46862 * 295.00425 * 15 12 10 41 41 H 1.09002 * 109.47153 * 59.99783 * 16 15 12 42 42 H 1.09001 * 109.46832 * 299.99974 * 16 15 12 43 43 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 44 44 H 1.08995 * 108.89583 * 182.69396 * 25 7 6 45 45 H 1.09004 * 108.88778 * 301.28087 * 25 7 6 46 46 H 1.08993 * 109.62818 * 95.22136 * 26 2 1 47 47 H 1.09001 * 109.62965 * 334.64183 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8823 1.0316 0.0000 4 6 2.0285 -0.6949 -1.2815 5 6 3.5033 -1.1310 -1.1896 6 6 4.3715 -0.0913 -0.5341 7 6 4.4788 -0.4195 0.9692 8 1 4.5894 -1.4975 1.0867 9 7 5.6668 0.2412 1.5154 10 6 6.8800 -0.3283 1.3729 11 8 6.9882 -1.3880 0.7929 12 6 8.1022 0.3515 1.9342 13 1 7.8635 0.7835 2.9061 14 7 9.1827 -0.6319 2.0875 15 6 8.5528 1.4597 0.9805 16 6 9.7159 2.2308 1.6076 17 6 10.1601 3.3219 0.6678 18 1 9.6622 3.4527 -0.2816 19 6 11.2014 4.1540 1.0206 20 7 11.8072 3.9951 2.1770 21 14 11.7514 5.5070 -0.1440 22 1 10.9894 6.7485 0.1445 23 1 13.2023 5.7619 0.0435 24 1 11.4999 5.0862 -1.5456 25 6 3.3099 0.0187 1.7174 26 6 2.0169 -0.6807 1.2506 27 1 -0.3633 0.5361 0.8768 28 1 -0.3633 0.4913 -0.9027 29 1 -0.3633 -1.0273 0.0258 30 1 1.4125 -1.5749 -1.4665 31 1 1.9186 -0.0069 -2.1199 32 1 3.5627 -2.0544 -0.6133 33 1 3.8789 -1.3188 -2.1955 34 1 3.9233 0.8939 -0.6627 35 1 5.3641 -0.1067 -0.9841 36 1 5.5803 1.0885 1.9794 37 1 9.4224 -1.0469 1.1996 38 1 9.9921 -0.2149 2.5222 39 1 7.7220 2.1411 0.7970 40 1 8.8757 1.0184 0.0376 41 1 10.5466 1.5493 1.7911 42 1 9.3929 2.6720 2.5505 43 1 12.5400 4.5803 2.4250 44 1 3.4661 -0.1971 2.7743 45 1 3.1929 1.0950 1.5908 46 1 2.2237 -1.7298 1.0396 47 1 1.2575 -0.6036 2.0288 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424180872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:07 Heat of formation + Delta-G solvation = -78.940593 kcal Electronic energy + Delta-G solvation = -22839.796756 eV Core-core repulsion = 19634.539520 eV Total energy + Delta-G solvation = -3205.257236 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.27373 -38.68821 -35.62460 -34.94274 -32.86059 -32.72056 -31.54867 -29.86774 -27.56886 -26.41828 -25.01544 -23.66443 -22.93678 -20.92485 -20.66701 -19.65831 -19.20403 -17.29815 -16.60034 -16.20737 -15.35788 -15.13391 -14.95035 -14.48083 -14.43967 -14.28806 -13.91863 -13.65127 -13.28190 -13.02228 -12.90186 -12.86057 -12.78375 -12.15902 -12.05392 -11.73353 -11.63659 -11.39898 -11.15808 -11.04981 -10.91746 -10.78914 -10.67908 -10.58418 -10.47222 -10.38521 -9.97916 -9.86225 -9.26717 -9.16164 -8.88080 -8.44042 -8.15526 -6.08604 -4.11657 3.00672 3.26797 3.30744 3.33679 3.37205 4.38280 4.39566 4.50165 4.57337 4.84960 4.89727 5.02118 5.06673 5.11311 5.21692 5.25288 5.27788 5.32594 5.37764 5.43536 5.52717 5.61393 5.66398 5.72482 5.79232 5.81653 5.85399 5.93139 5.96969 6.06366 6.06761 6.19211 6.24397 6.30568 6.34274 6.53884 6.67640 6.88900 7.47096 7.52939 7.62656 7.77868 7.88672 7.93378 8.31480 8.55236 8.94414 9.53227 11.02340 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021846 B = 0.003257 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.378810 B = 8593.778962 C = 9208.703381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.125 4.125 7 C 0.151 3.849 8 H 0.081 0.919 9 N -0.735 5.735 10 C 0.526 3.474 11 O -0.538 6.538 12 C 0.073 3.927 13 H 0.095 0.905 14 N -0.831 5.831 15 C -0.136 4.136 16 C 0.024 3.976 17 C -0.524 4.524 18 H 0.054 0.946 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.893 3.107 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.274 1.274 25 C -0.130 4.130 26 C -0.106 4.106 27 H 0.054 0.946 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.399 0.601 37 H 0.345 0.655 38 H 0.353 0.647 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.018 0.982 42 H 0.018 0.982 43 H 0.262 0.738 44 H 0.067 0.933 45 H 0.067 0.933 46 H 0.068 0.932 47 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.056 -7.908 -1.969 22.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.112 4.112 3 H 0.088 0.912 4 C -0.149 4.149 5 C -0.154 4.154 6 C -0.164 4.164 7 C 0.046 3.954 8 H 0.099 0.901 9 N -0.387 5.387 10 C 0.313 3.687 11 O -0.414 6.414 12 C -0.042 4.042 13 H 0.113 0.887 14 N -0.363 5.363 15 C -0.176 4.176 16 C -0.013 4.013 17 C -0.562 4.562 18 H 0.073 0.927 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.720 3.280 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.168 4.168 26 C -0.144 4.144 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.233 0.767 37 H 0.158 0.842 38 H 0.169 0.831 39 H 0.074 0.926 40 H 0.072 0.928 41 H 0.036 0.964 42 H 0.036 0.964 43 H 0.071 0.929 44 H 0.086 0.914 45 H 0.086 0.914 46 H 0.087 0.913 47 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.324 -9.024 -1.801 23.225 hybrid contribution 0.893 1.988 -1.025 2.409 sum -20.431 -7.036 -2.826 21.792 Atomic orbital electron populations 1.21952 0.95483 1.01625 1.01538 1.20987 0.95294 1.00222 0.94714 0.91202 1.21996 0.95815 1.00074 0.97029 1.21250 0.94200 0.98990 1.00931 1.21718 1.00417 0.99260 0.94979 1.19834 0.84342 0.98459 0.92745 0.90105 1.46259 1.06676 1.25970 1.59793 1.20858 0.84414 0.84778 0.78686 1.90624 1.86152 1.22393 1.42234 1.21483 0.90355 0.92140 1.00199 0.88728 1.58741 1.12650 1.34471 1.30422 1.22361 1.01024 0.96124 0.98089 1.19101 0.91595 0.94490 0.96098 1.21188 1.16569 1.14884 1.03550 0.92733 1.25014 0.96372 0.97671 0.95271 1.69949 1.23372 1.38828 1.21079 0.86584 0.77864 0.82214 0.81304 1.20613 1.21146 1.19881 1.20769 0.94524 1.01211 1.00249 1.21317 0.96038 1.00085 0.96973 0.92724 0.92922 0.92793 0.92304 0.92394 0.91946 0.92155 0.91599 0.91251 0.76705 0.84179 0.83147 0.92592 0.92762 0.96420 0.96366 0.92882 0.91407 0.91420 0.91350 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.79 37.16 0.33 -0.64 16 2 C -0.09 -0.70 2.21 -91.32 -0.20 -0.90 16 3 H 0.07 0.56 6.62 -51.93 -0.34 0.22 16 4 C -0.11 -0.90 5.23 -25.62 -0.13 -1.03 16 5 C -0.12 -1.14 5.31 -27.43 -0.15 -1.28 16 6 C -0.13 -1.42 5.18 -27.34 -0.14 -1.57 16 7 C 0.15 1.72 1.94 -70.80 -0.14 1.58 16 8 H 0.08 1.08 6.91 -51.93 -0.36 0.72 16 9 N -0.73 -9.52 5.03 -56.62 -0.28 -9.80 16 10 C 0.53 8.75 6.81 -10.98 -0.07 8.67 16 11 O -0.54 -10.54 15.92 5.55 0.09 -10.46 16 12 C 0.07 1.26 3.21 -68.87 -0.22 1.04 16 13 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 14 N -0.83 -14.60 8.94 -5.66 -0.05 -14.66 16 15 C -0.14 -2.69 4.78 -26.74 -0.13 -2.82 16 16 C 0.02 0.59 4.74 -27.88 -0.13 0.46 16 17 C -0.52 -14.42 9.11 -34.44 -0.31 -14.74 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 21 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.13 -1.13 4.60 -29.60 -0.14 -1.27 16 26 C -0.11 -0.81 5.13 -27.34 -0.14 -0.95 16 27 H 0.05 0.33 8.08 -51.93 -0.42 -0.09 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.44 7.98 -51.93 -0.41 0.03 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.64 6.63 -51.93 -0.34 0.29 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.70 6.97 -51.93 -0.36 0.34 16 35 H 0.07 0.98 7.90 -51.93 -0.41 0.57 16 36 H 0.40 4.40 8.55 -40.82 -0.35 4.06 16 37 H 0.35 6.16 8.58 -39.29 -0.34 5.82 16 38 H 0.35 6.21 7.55 -39.29 -0.30 5.92 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.02 0.45 6.87 -51.93 -0.36 0.09 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 45 H 0.07 0.56 7.46 -51.93 -0.39 0.17 16 46 H 0.07 0.55 6.98 -51.93 -0.36 0.19 16 47 H 0.07 0.46 7.67 -51.93 -0.40 0.06 16 LS Contribution 360.62 15.07 5.43 5.43 Total: -1.00 -30.76 360.62 -9.26 -40.02 By element: Atomic # 1 Polarization: 18.93 SS G_CDS: -8.49 Total: 10.44 kcal Atomic # 6 Polarization: -10.22 SS G_CDS: -1.68 Total: -11.90 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.40 Total: -49.83 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -30.76 -9.26 -40.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424180872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.921 kcal (2) G-P(sol) polarization free energy of solvation -30.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds