Wall clock time and date at job start Tue Mar 31 2020 06:15:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 108.85416 * 2 1 4 4 C 1.54065 * 108.87693 * 241.53146 * 2 1 3 5 5 C 1.54066 * 112.81475 * 197.50553 * 4 2 1 6 6 C 1.50478 * 112.50044 * 318.28696 * 5 4 2 7 7 C 1.54242 * 108.52284 * 94.15310 * 6 5 4 8 8 H 1.09001 * 108.82125 * 40.71219 * 7 6 5 9 9 N 1.46497 * 108.89652 * 159.26622 * 7 6 5 10 10 C 1.34781 * 119.99716 * 277.88226 * 9 7 6 11 11 O 1.21286 * 119.99983 * 359.97438 * 10 9 7 12 12 C 1.50699 * 120.00160 * 179.97438 * 10 9 7 13 13 H 1.09002 * 109.46753 * 39.99710 * 12 10 9 14 14 N 1.46898 * 109.47192 * 159.99754 * 12 10 9 15 15 C 1.52992 * 109.47482 * 279.99980 * 12 10 9 16 16 C 1.52997 * 109.47482 * 174.99860 * 15 12 10 17 17 C 1.50701 * 109.47212 * 179.97438 * 16 15 12 18 18 H 1.07998 * 120.00129 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99861 * 179.97438 * 17 16 15 20 20 N 1.31510 * 119.99913 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99734 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47094 * 90.00289 * 21 19 17 23 23 H 1.48505 * 109.47195 * 210.00171 * 21 19 17 24 24 H 1.48493 * 109.47449 * 330.00136 * 21 19 17 25 25 C 1.45545 * 112.40114 * 280.01527 * 7 6 5 26 26 C 1.50477 * 108.87573 * 118.55877 * 2 1 3 27 27 H 1.09000 * 109.47053 * 301.44147 * 1 2 3 28 28 H 1.09003 * 109.46803 * 61.43933 * 1 2 3 29 29 H 1.08995 * 109.47290 * 181.44031 * 1 2 3 30 30 H 1.08996 * 108.81478 * 318.37216 * 4 2 1 31 31 H 1.09005 * 108.81205 * 76.76050 * 4 2 1 32 32 H 1.09005 * 108.87367 * 79.06446 * 5 4 2 33 33 H 1.09000 * 108.87810 * 197.60548 * 5 4 2 34 34 H 1.08994 * 109.62974 * 334.43840 * 6 5 4 35 35 H 1.09001 * 109.62265 * 213.86018 * 6 5 4 36 36 H 0.96994 * 120.00502 * 97.87359 * 9 7 6 37 37 H 1.00899 * 111.00057 * 59.99855 * 14 12 10 38 38 H 1.00898 * 110.99947 * 183.96241 * 14 12 10 39 39 H 1.09002 * 109.47103 * 54.99613 * 15 12 10 40 40 H 1.08998 * 109.46862 * 295.00425 * 15 12 10 41 41 H 1.09002 * 109.47153 * 59.99783 * 16 15 12 42 42 H 1.09001 * 109.46832 * 299.99974 * 16 15 12 43 43 H 0.97002 * 119.99768 * 179.97438 * 20 19 17 44 44 H 1.08995 * 108.89583 * 182.69396 * 25 7 6 45 45 H 1.09004 * 108.88778 * 301.28087 * 25 7 6 46 46 H 1.08993 * 109.62818 * 95.22136 * 26 2 1 47 47 H 1.09001 * 109.62965 * 334.64183 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8823 1.0316 0.0000 4 6 2.0285 -0.6949 -1.2815 5 6 3.5033 -1.1310 -1.1896 6 6 4.3715 -0.0913 -0.5341 7 6 4.4788 -0.4195 0.9692 8 1 4.5894 -1.4975 1.0867 9 7 5.6668 0.2412 1.5154 10 6 6.8800 -0.3283 1.3729 11 8 6.9882 -1.3880 0.7929 12 6 8.1022 0.3515 1.9342 13 1 7.8635 0.7835 2.9061 14 7 9.1827 -0.6319 2.0875 15 6 8.5528 1.4597 0.9805 16 6 9.7159 2.2308 1.6076 17 6 10.1601 3.3219 0.6678 18 1 9.6622 3.4527 -0.2816 19 6 11.2014 4.1540 1.0206 20 7 11.8072 3.9951 2.1770 21 14 11.7514 5.5070 -0.1440 22 1 10.9894 6.7485 0.1445 23 1 13.2023 5.7619 0.0435 24 1 11.4999 5.0862 -1.5456 25 6 3.3099 0.0187 1.7174 26 6 2.0169 -0.6807 1.2506 27 1 -0.3633 0.5361 0.8768 28 1 -0.3633 0.4913 -0.9027 29 1 -0.3633 -1.0273 0.0258 30 1 1.4125 -1.5749 -1.4665 31 1 1.9186 -0.0069 -2.1199 32 1 3.5627 -2.0544 -0.6133 33 1 3.8789 -1.3188 -2.1955 34 1 3.9233 0.8939 -0.6627 35 1 5.3641 -0.1067 -0.9841 36 1 5.5803 1.0885 1.9794 37 1 9.4224 -1.0469 1.1996 38 1 9.9921 -0.2149 2.5222 39 1 7.7220 2.1411 0.7970 40 1 8.8757 1.0184 0.0376 41 1 10.5466 1.5493 1.7911 42 1 9.3929 2.6720 2.5505 43 1 12.5400 4.5803 2.4250 44 1 3.4661 -0.1971 2.7743 45 1 3.1929 1.0950 1.5908 46 1 2.2237 -1.7298 1.0396 47 1 1.2575 -0.6036 2.0288 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424180872.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:06 Heat of formation + Delta-G solvation = -98.988406 kcal Electronic energy + Delta-G solvation = -22840.666094 eV Core-core repulsion = 19634.539520 eV Total energy + Delta-G solvation = -3206.126574 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.37495 -39.71907 -37.10460 -36.05064 -34.83954 -33.52484 -32.47057 -31.68737 -28.57538 -27.73297 -26.19654 -25.05682 -23.72357 -22.39202 -21.79408 -20.99034 -19.90267 -18.86383 -18.08661 -17.64261 -16.57753 -16.29605 -16.07363 -15.85044 -15.76255 -15.44936 -15.05361 -14.87050 -14.55689 -14.20893 -14.02689 -13.93807 -13.58356 -13.50969 -13.44084 -12.94286 -12.74555 -12.66409 -12.54043 -12.35529 -12.17969 -11.96418 -11.81252 -11.68669 -11.53523 -11.31042 -11.26714 -11.19294 -11.06544 -10.66886 -10.56634 -10.03086 -9.64267 -8.22193 -6.32669 1.39041 1.39913 1.50537 1.65092 2.15946 2.39566 3.11440 3.62613 3.73576 3.77181 3.80973 3.97760 4.09868 4.13756 4.19440 4.25709 4.30467 4.39035 4.46240 4.50578 4.66170 4.74660 4.80605 4.83423 4.88082 4.94604 5.06754 5.08759 5.10514 5.18794 5.21695 5.28080 5.30622 5.36215 5.45763 5.47070 5.50661 5.59367 5.64604 5.65203 5.79982 6.07418 6.20668 6.46932 6.58827 6.82832 7.28703 7.36524 8.88640 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.021846 B = 0.003257 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.378810 B = 8593.778962 C = 9208.703381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 H 0.068 0.932 4 C -0.107 4.107 5 C -0.114 4.114 6 C -0.121 4.121 7 C 0.154 3.846 8 H 0.061 0.939 9 N -0.720 5.720 10 C 0.527 3.473 11 O -0.571 6.571 12 C 0.079 3.921 13 H 0.109 0.891 14 N -0.830 5.830 15 C -0.119 4.119 16 C 0.030 3.970 17 C -0.546 4.546 18 H 0.054 0.946 19 C 0.005 3.995 20 N -0.927 5.927 21 Si 0.959 3.041 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.268 1.268 25 C -0.126 4.126 26 C -0.102 4.102 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.411 0.589 37 H 0.343 0.657 38 H 0.352 0.648 39 H 0.065 0.935 40 H 0.041 0.959 41 H 0.002 0.998 42 H 0.002 0.998 43 H 0.264 0.736 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.062 0.938 47 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.912 -7.080 -2.241 24.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.086 0.914 4 C -0.145 4.145 5 C -0.152 4.152 6 C -0.159 4.159 7 C 0.050 3.950 8 H 0.079 0.921 9 N -0.372 5.372 10 C 0.313 3.687 11 O -0.450 6.450 12 C -0.036 4.036 13 H 0.126 0.874 14 N -0.362 5.362 15 C -0.158 4.158 16 C -0.007 4.007 17 C -0.584 4.584 18 H 0.072 0.928 19 C -0.193 4.193 20 N -0.567 5.567 21 Si 0.784 3.216 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.193 1.193 25 C -0.164 4.164 26 C -0.140 4.140 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.056 0.944 36 H 0.247 0.753 37 H 0.156 0.844 38 H 0.167 0.833 39 H 0.084 0.916 40 H 0.060 0.940 41 H 0.020 0.980 42 H 0.021 0.979 43 H 0.073 0.927 44 H 0.091 0.909 45 H 0.097 0.903 46 H 0.081 0.919 47 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -23.220 -8.178 -2.066 24.704 hybrid contribution 1.466 1.708 -0.928 2.435 sum -21.754 -6.470 -2.993 22.892 Atomic orbital electron populations 1.21923 0.94443 1.02000 1.01970 1.20978 0.96140 0.99859 0.94155 0.91398 1.21963 0.94276 1.00574 0.97656 1.21219 0.95391 0.98260 1.00299 1.21657 0.99053 1.00428 0.94776 1.19942 0.84612 0.97268 0.93138 0.92063 1.46202 1.06107 1.26099 1.58773 1.20682 0.85175 0.84425 0.78390 1.90614 1.86704 1.23883 1.43771 1.21433 0.90696 0.91319 1.00157 0.87363 1.58759 1.12741 1.34410 1.30244 1.22104 0.99574 0.96532 0.97638 1.18964 0.92627 0.93915 0.95166 1.21624 1.16859 1.15835 1.04046 0.92760 1.25870 0.96486 1.00106 0.96859 1.70061 1.23914 1.39950 1.22752 0.85533 0.77453 0.79340 0.79249 1.19606 1.20792 1.19267 1.20743 0.93734 1.01954 0.99994 1.21310 0.95640 0.99572 0.97509 0.92097 0.92728 0.92467 0.91510 0.92092 0.92562 0.92647 0.90488 0.94424 0.75285 0.84413 0.83323 0.91598 0.93979 0.98020 0.97922 0.92705 0.90940 0.90291 0.91898 0.89883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.79 71.98 0.63 -0.88 16 2 C -0.09 -1.18 2.21 -11.25 -0.02 -1.20 16 3 H 0.07 0.91 6.62 -2.39 -0.02 0.89 16 4 C -0.11 -1.54 5.23 31.31 0.16 -1.38 16 5 C -0.11 -2.17 5.31 30.14 0.16 -2.01 16 6 C -0.12 -2.68 5.18 30.20 0.16 -2.53 16 7 C 0.15 3.38 1.94 43.14 0.08 3.46 16 8 H 0.06 1.62 6.91 -2.39 -0.02 1.61 16 9 N -0.72 -17.93 5.03 -451.44 -2.27 -20.20 16 10 C 0.53 17.36 6.81 87.66 0.60 17.96 16 11 O -0.57 -22.59 15.92 -3.05 -0.05 -22.63 16 12 C 0.08 2.70 3.21 44.17 0.14 2.84 16 13 H 0.11 3.40 8.14 -2.39 -0.02 3.38 16 14 N -0.83 -29.37 8.94 -171.81 -1.54 -30.90 16 15 C -0.12 -4.67 4.78 30.59 0.15 -4.53 16 16 C 0.03 1.50 4.74 29.85 0.14 1.64 16 17 C -0.55 -30.12 9.11 25.60 0.23 -29.89 16 18 H 0.05 2.93 7.74 -2.91 -0.02 2.90 16 19 C 0.01 0.30 5.46 84.66 0.46 0.76 16 20 N -0.93 -54.51 13.29 21.45 0.28 -54.22 16 21 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 22 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 25 C -0.13 -1.95 4.60 28.74 0.13 -1.82 16 26 C -0.10 -1.33 5.13 30.20 0.15 -1.17 16 27 H 0.06 0.57 8.08 -2.39 -0.02 0.55 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.07 0.87 7.98 -2.39 -0.02 0.85 16 31 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.06 1.14 6.63 -2.38 -0.02 1.12 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.52 6.97 -2.39 -0.02 1.51 16 35 H 0.04 1.08 7.90 -2.39 -0.02 1.06 16 36 H 0.41 8.33 8.55 -92.71 -0.79 7.54 16 37 H 0.34 12.43 8.58 -89.69 -0.77 11.67 16 38 H 0.35 12.56 7.55 -89.70 -0.68 11.89 16 39 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 40 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.00 0.08 6.87 -2.39 -0.02 0.06 16 42 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 43 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 44 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.08 1.08 7.46 -2.38 -0.02 1.06 16 46 H 0.06 0.91 6.98 -2.39 -0.02 0.89 16 47 H 0.08 0.87 7.67 -2.39 -0.02 0.86 16 Total: -1.00 -65.58 360.62 0.36 -65.22 By element: Atomic # 1 Polarization: 37.29 SS G_CDS: -1.28 Total: 36.01 kcal Atomic # 6 Polarization: -21.92 SS G_CDS: 3.18 Total: -18.74 kcal Atomic # 7 Polarization: -101.80 SS G_CDS: -3.52 Total: -105.32 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.63 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -65.58 0.36 -65.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424180872.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.769 kcal (2) G-P(sol) polarization free energy of solvation -65.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds