Wall clock time and date at job start Tue Mar 31 2020 06:42:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.45871 * 2 1 4 4 C 1.53039 * 109.45888 * 240.03335 * 2 1 3 5 5 C 1.53191 * 109.31416 * 178.62533 * 4 2 1 6 6 N 1.46928 * 108.77343 * 54.63452 * 5 4 2 7 7 C 1.34784 * 120.62829 * 126.41175 * 6 5 4 8 8 O 1.21276 * 119.99470 * 179.97438 * 7 6 5 9 9 C 1.50698 * 119.99966 * 359.97438 * 7 6 5 10 10 H 1.09003 * 109.47222 * 40.00193 * 9 7 6 11 11 N 1.46902 * 109.46975 * 159.99775 * 9 7 6 12 12 C 1.52995 * 109.47225 * 279.99843 * 9 7 6 13 13 C 1.53001 * 109.47304 * 175.00319 * 12 9 7 14 14 C 1.50705 * 109.47231 * 180.02562 * 13 12 9 15 15 H 1.07994 * 120.00025 * 359.97438 * 14 13 12 16 16 C 1.37875 * 119.99929 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99812 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 119.99914 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46853 * 90.00558 * 18 16 14 20 20 H 1.48505 * 109.47092 * 210.00160 * 18 16 14 21 21 H 1.48493 * 109.47254 * 330.00280 * 18 16 14 22 22 C 1.46919 * 118.73982 * 306.39079 * 6 5 4 23 23 C 1.53070 * 109.44404 * 119.82861 * 2 1 3 24 24 C 1.52992 * 109.38974 * 61.35989 * 23 2 1 25 25 C 1.52997 * 109.62317 * 301.25147 * 23 2 1 26 26 H 1.08999 * 109.47154 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46825 * 299.97111 * 1 2 3 28 28 H 1.08996 * 109.47631 * 59.96435 * 1 2 3 29 29 H 1.09002 * 109.49876 * 58.67511 * 4 2 1 30 30 H 1.09005 * 109.52615 * 298.59760 * 4 2 1 31 31 H 1.08998 * 109.58966 * 294.84519 * 5 4 2 32 32 H 1.08999 * 109.58758 * 174.41876 * 5 4 2 33 33 H 1.00902 * 111.00172 * 59.99795 * 11 9 7 34 34 H 1.00904 * 110.99933 * 183.95268 * 11 9 7 35 35 H 1.09005 * 109.47145 * 295.00350 * 12 9 7 36 36 H 1.08997 * 109.47424 * 55.00045 * 12 9 7 37 37 H 1.09005 * 109.47045 * 300.00092 * 13 12 9 38 38 H 1.08996 * 109.47377 * 60.00005 * 13 12 9 39 39 H 0.97005 * 119.99453 * 180.02562 * 17 16 14 40 40 H 1.09002 * 109.58751 * 173.39743 * 22 6 5 41 41 H 1.08996 * 109.58750 * 293.67928 * 22 6 5 42 42 H 1.08999 * 109.47306 * 179.75054 * 24 23 2 43 43 H 1.09002 * 109.47236 * 299.74934 * 24 23 2 44 44 H 1.08998 * 109.47429 * 59.75154 * 24 23 2 45 45 H 1.09005 * 109.47207 * 300.11103 * 25 23 2 46 46 H 1.09002 * 109.47201 * 60.10273 * 25 23 2 47 47 H 1.09001 * 109.47583 * 180.10888 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7208 -1.2501 5 6 3.5713 -0.6889 -1.2642 6 7 4.0676 -1.2493 0.0001 7 6 4.9616 -2.2579 0.0001 8 8 5.3639 -2.7115 1.0504 9 6 5.4612 -2.8219 -1.3050 10 1 5.6238 -2.0095 -2.0134 11 7 6.7258 -3.5343 -1.0784 12 6 4.4234 -3.7927 -1.8716 13 6 4.8726 -4.2698 -3.2542 14 6 3.8500 -5.2256 -3.8127 15 1 2.9682 -5.4688 -3.2387 16 6 4.0403 -5.7895 -5.0563 17 7 5.1145 -5.4936 -5.7551 18 14 2.7731 -6.9748 -5.7482 19 1 1.7570 -6.2169 -6.5217 20 1 3.4457 -7.9533 -6.6401 21 1 2.1094 -7.6963 -4.6329 22 6 3.5711 -0.6890 1.2643 23 6 2.0395 -0.7180 1.2522 24 6 1.5563 -2.1695 1.2374 25 6 1.5055 -0.0140 2.5012 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5134 0.8903 28 1 -0.3634 0.5144 -0.8896 29 1 1.6573 -0.2206 -2.1399 30 1 1.6975 -1.7556 -1.2390 31 1 3.9144 0.3406 -1.3672 32 1 3.9415 -1.2849 -2.0983 33 1 6.6015 -4.2927 -0.4246 34 1 7.1145 -3.8667 -1.9483 35 1 4.3260 -4.6500 -1.2055 36 1 3.4614 -3.2874 -1.9565 37 1 4.9701 -3.4125 -3.9204 38 1 5.8346 -4.7751 -3.1694 39 1 5.2482 -5.8901 -6.6303 40 1 3.9413 -1.2850 2.0985 41 1 3.9163 0.3396 1.3687 42 1 1.9222 -2.6833 2.1264 43 1 0.4665 -2.1896 1.2288 44 1 1.9360 -2.6698 0.3466 45 1 1.8490 1.0205 2.5101 46 1 0.4158 -0.0347 2.4921 47 1 1.8713 -0.5259 3.3913 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424194247.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:36 Heat of formation + Delta-G solvation = -63.921264 kcal Electronic energy + Delta-G solvation = -24001.906700 eV Core-core repulsion = 20797.300751 eV Total energy + Delta-G solvation = -3204.605949 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.61456 -38.47777 -35.52795 -34.57336 -32.87941 -32.57953 -29.88926 -28.67468 -27.71633 -27.38943 -25.78563 -23.97203 -22.84606 -22.19102 -20.49136 -19.02010 -18.13688 -17.37821 -16.31772 -15.91514 -15.41566 -15.11844 -14.72485 -14.42577 -14.32492 -14.02040 -13.80211 -13.64426 -13.30288 -13.05934 -12.85755 -12.42643 -12.24220 -12.14282 -12.03392 -11.85303 -11.70825 -11.59539 -11.28522 -11.11676 -11.02952 -10.91269 -10.72113 -10.68676 -10.34437 -10.23651 -9.98156 -9.84589 -9.26407 -9.13335 -8.46602 -8.44451 -8.15197 -6.09094 -4.12117 2.96940 3.14572 3.26173 3.33275 3.36527 4.38655 4.45867 4.59193 4.61361 4.87172 4.91780 5.12493 5.18817 5.23783 5.27360 5.28960 5.36357 5.42010 5.54461 5.56703 5.61053 5.70469 5.74910 5.78404 5.78753 5.84494 5.84943 5.87881 5.90125 5.99594 6.12670 6.20392 6.26421 6.30968 6.46589 6.53435 6.67881 6.87558 7.44276 7.51544 7.60651 7.68716 7.87990 7.93024 8.30660 8.50161 8.93732 9.52844 11.01801 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017831 B = 0.004775 C = 0.004118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.953500 B = 5862.832879 C = 6797.787106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.079 4.079 3 H 0.068 0.932 4 C -0.134 4.134 5 C 0.102 3.898 6 N -0.612 5.612 7 C 0.528 3.472 8 O -0.541 6.541 9 C 0.074 3.926 10 H 0.096 0.904 11 N -0.831 5.831 12 C -0.138 4.138 13 C 0.025 3.975 14 C -0.522 4.522 15 H 0.054 0.946 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.891 3.109 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.123 3.877 23 C -0.073 4.073 24 C -0.142 4.142 25 C -0.140 4.140 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.096 0.904 33 H 0.345 0.655 34 H 0.353 0.647 35 H 0.054 0.946 36 H 0.057 0.943 37 H 0.018 0.982 38 H 0.018 0.982 39 H 0.261 0.739 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.056 0.944 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.061 0.939 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.326 12.993 11.465 18.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 H 0.087 0.913 4 C -0.172 4.172 5 C -0.020 4.020 6 N -0.346 5.346 7 C 0.317 3.683 8 O -0.417 6.417 9 C -0.041 4.041 10 H 0.113 0.887 11 N -0.363 5.363 12 C -0.177 4.177 13 C -0.012 4.012 14 C -0.561 4.561 15 H 0.072 0.928 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.206 1.206 20 H -0.211 1.211 21 H -0.199 1.199 22 C 0.000 4.000 23 C -0.074 4.074 24 C -0.199 4.199 25 C -0.198 4.198 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.114 0.886 33 H 0.158 0.842 34 H 0.169 0.831 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.080 0.920 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.714 13.392 12.144 19.285 hybrid contribution -1.268 -1.426 -1.017 2.162 sum -7.981 11.967 11.127 18.186 Atomic orbital electron populations 1.21934 0.95183 1.02135 1.01453 1.21118 0.95696 0.98932 0.94059 0.91313 1.22054 0.95076 1.02239 0.97855 1.21845 0.94422 0.99276 0.86504 1.48018 1.43827 1.35914 1.06837 1.20862 0.77539 0.78221 0.91662 1.90609 1.57544 1.59716 1.33809 1.21505 0.91562 0.98183 0.92881 0.88659 1.58756 1.25372 1.34439 1.17721 1.22410 0.97425 0.97415 1.00494 1.19098 0.96794 0.96266 0.89055 1.21163 1.06548 1.26371 1.01974 0.92777 1.24998 0.95518 0.96688 0.97017 1.69953 1.26631 1.44067 1.12532 0.86603 0.81507 0.80966 0.79011 1.20610 1.21149 1.19907 1.21578 0.92536 0.98512 0.87393 1.20900 0.94881 0.96397 0.95260 1.21917 1.00651 0.94901 1.02427 1.21856 1.01216 1.00000 0.96733 0.92279 0.92541 0.92806 0.90602 0.90566 0.91644 0.88555 0.84192 0.83145 0.92771 0.92400 0.96392 0.96425 0.92894 0.89223 0.92080 0.92936 0.92549 0.91905 0.92678 0.92023 0.92555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.49 37.16 0.32 -0.95 16 2 C -0.08 -0.75 2.00 -90.57 -0.18 -0.93 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.13 -1.45 5.02 -26.61 -0.13 -1.58 16 5 C 0.10 1.23 5.76 -3.71 -0.02 1.21 16 6 N -0.61 -8.51 2.42 -172.77 -0.42 -8.93 16 7 C 0.53 9.13 6.95 -10.98 -0.08 9.05 16 8 O -0.54 -10.89 15.66 5.56 0.09 -10.80 16 9 C 0.07 1.29 2.35 -68.87 -0.16 1.12 16 10 H 0.10 1.59 6.80 -51.93 -0.35 1.23 16 11 N -0.83 -14.74 8.94 -5.65 -0.05 -14.79 16 12 C -0.14 -2.71 4.45 -26.73 -0.12 -2.82 16 13 C 0.02 0.60 4.74 -27.88 -0.13 0.47 16 14 C -0.52 -14.18 9.11 -34.44 -0.31 -14.49 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.12 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 C 0.12 1.50 5.10 -3.71 -0.02 1.48 16 23 C -0.07 -0.75 0.55 -154.38 -0.08 -0.83 16 24 C -0.14 -1.66 7.66 37.15 0.28 -1.37 16 25 C -0.14 -1.18 8.10 37.16 0.30 -0.87 16 26 H 0.06 0.54 6.47 -51.93 -0.34 0.20 16 27 H 0.06 0.43 6.41 -51.93 -0.33 0.09 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.95 6.34 -51.93 -0.33 0.62 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.10 1.28 4.84 -51.93 -0.25 1.02 16 33 H 0.34 6.21 8.58 -39.29 -0.34 5.87 16 34 H 0.35 6.23 7.55 -39.29 -0.30 5.93 16 35 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 36 H 0.06 1.09 6.97 -51.93 -0.36 0.73 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.02 0.44 6.87 -51.93 -0.36 0.09 16 39 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 40 H 0.09 1.26 7.01 -51.93 -0.36 0.90 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.59 6.47 -51.93 -0.34 0.25 16 44 H 0.06 0.87 5.97 -51.93 -0.31 0.56 16 45 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.47 6.42 -51.93 -0.33 0.14 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 LS Contribution 351.06 15.07 5.29 5.29 Total: -1.00 -30.29 351.06 -7.88 -38.17 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: -8.07 Total: 9.04 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: -0.44 Total: -8.99 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.27 Total: -48.83 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.29 -7.88 -38.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424194247.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.754 kcal (2) G-P(sol) polarization free energy of solvation -30.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds