Wall clock time and date at job start Tue Mar 31 2020 06:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53191 * 109.31132 * 181.37889 * 4 2 1 6 6 N 1.46921 * 108.77411 * 305.35957 * 5 4 2 7 7 C 1.34777 * 120.63225 * 233.58641 * 6 5 4 8 8 O 1.21282 * 119.99945 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.99997 * 0.02846 * 7 6 5 10 10 H 1.08999 * 109.46693 * 319.99515 * 9 7 6 11 11 N 1.46895 * 109.47014 * 199.99800 * 9 7 6 12 12 C 1.53000 * 109.47234 * 79.99723 * 9 7 6 13 13 C 1.52993 * 109.47208 * 185.00177 * 12 9 7 14 14 C 1.50698 * 109.47248 * 179.97438 * 13 12 9 15 15 H 1.07996 * 119.99764 * 0.02562 * 14 13 12 16 16 C 1.37877 * 119.99843 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00021 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99807 * 180.02562 * 16 14 13 19 19 H 1.48493 * 109.47279 * 59.99963 * 18 16 14 20 20 H 1.48500 * 109.47313 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.47223 * 300.00354 * 18 16 14 22 22 C 1.46925 * 118.73795 * 53.61317 * 6 5 4 23 23 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 24 24 C 1.52996 * 109.49670 * 298.58564 * 23 2 1 25 25 C 1.53003 * 109.49313 * 58.64695 * 23 2 1 26 26 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 28 28 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 29 29 H 1.09004 * 109.49679 * 301.32867 * 4 2 1 30 30 H 1.08994 * 109.49744 * 61.42383 * 4 2 1 31 31 H 1.09002 * 109.58035 * 185.57574 * 5 4 2 32 32 H 1.09001 * 109.70369 * 65.22144 * 5 4 2 33 33 H 1.00901 * 110.99972 * 176.04729 * 11 9 7 34 34 H 1.00904 * 111.00419 * 299.99807 * 11 9 7 35 35 H 1.09004 * 109.46969 * 304.99973 * 12 9 7 36 36 H 1.09001 * 109.46919 * 65.00082 * 12 9 7 37 37 H 1.09004 * 109.46990 * 299.99784 * 13 12 9 38 38 H 1.08997 * 109.47439 * 59.99392 * 13 12 9 39 39 H 0.97008 * 119.99786 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.59222 * 186.59958 * 22 6 5 41 41 H 1.09000 * 109.58691 * 66.17848 * 22 6 5 42 42 H 1.08999 * 109.47538 * 59.99839 * 24 23 2 43 43 H 1.09005 * 109.46692 * 179.97438 * 24 23 2 44 44 H 1.08999 * 109.46838 * 299.99459 * 24 23 2 45 45 H 1.09005 * 109.47408 * 60.00203 * 25 23 2 46 46 H 1.09001 * 109.46808 * 179.97438 * 25 23 2 47 47 H 1.08996 * 109.47101 * 300.00051 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 3.5711 -0.6890 1.2645 6 7 4.0675 -1.2494 0.0004 7 6 4.9616 -2.2580 0.0005 8 8 5.3641 -2.7117 -1.0497 9 6 5.4610 -2.8220 1.3057 10 1 5.6234 -2.0097 2.0141 11 7 6.7255 -3.5345 1.0793 12 6 4.4230 -3.7929 1.8723 13 6 4.8720 -4.2698 3.2549 14 6 3.8493 -5.2255 3.8132 15 1 2.9675 -5.4688 3.2390 16 6 4.0399 -5.7902 5.0565 17 7 5.1139 -5.4943 5.7554 18 14 2.7726 -6.9754 5.7483 19 1 2.6395 -8.1431 4.8406 20 1 3.2083 -7.4383 7.0903 21 1 1.4621 -6.2868 5.8640 22 6 3.5714 -0.6891 -1.2639 23 6 2.0399 -0.7210 -1.2500 24 6 1.5593 -2.1734 -1.2335 25 6 1.5024 -0.0194 -2.4990 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.6569 -0.2207 2.1399 30 1 1.6973 -1.7556 1.2384 31 1 3.9411 -1.2850 2.0988 32 1 3.9163 0.3396 1.3688 33 1 7.1140 -3.8669 1.9492 34 1 6.6013 -4.2930 0.4256 35 1 3.4610 -3.2874 1.9570 36 1 4.3257 -4.6501 1.2061 37 1 5.8340 -4.7752 3.1702 38 1 4.9694 -3.4126 3.9210 39 1 5.2478 -5.8913 6.6303 40 1 3.9416 -1.2851 -2.0981 41 1 3.9146 0.3403 -1.3670 42 1 0.4697 -2.1956 -1.2206 43 1 1.9224 -2.6863 -2.1242 44 1 1.9434 -2.6730 -0.3441 45 1 1.8459 1.0150 -2.5110 46 1 1.8661 -0.5330 -3.3890 47 1 0.4127 -0.0403 -2.4868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424194249.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:39 Heat of formation + Delta-G solvation = -63.765869 kcal Electronic energy + Delta-G solvation = -24004.139949 eV Core-core repulsion = 20799.540739 eV Total energy + Delta-G solvation = -3204.599211 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.61820 -38.47806 -35.52729 -34.57265 -32.87898 -32.57664 -29.88942 -28.67558 -27.71713 -27.38647 -25.78523 -23.97150 -22.84531 -22.18758 -20.48961 -19.01820 -18.13914 -17.37779 -16.31483 -15.91382 -15.41764 -15.11994 -14.72460 -14.42869 -14.32325 -14.01961 -13.80050 -13.64249 -13.30266 -13.05877 -12.85365 -12.42629 -12.24167 -12.14153 -12.03026 -11.85250 -11.70825 -11.59481 -11.28338 -11.11751 -11.02822 -10.89642 -10.72040 -10.70681 -10.34120 -10.23810 -9.97743 -9.84363 -9.27495 -9.13310 -8.46595 -8.44088 -8.15109 -6.08816 -4.11935 2.96985 3.14621 3.27804 3.32895 3.35223 4.38731 4.46159 4.59097 4.61440 4.87277 4.91917 5.12489 5.18885 5.23813 5.27521 5.28874 5.36478 5.42114 5.54537 5.56809 5.61144 5.70554 5.74965 5.78344 5.78776 5.84603 5.84984 5.87955 5.90191 5.99619 6.12761 6.20518 6.26463 6.31056 6.46654 6.53480 6.67876 6.87650 7.44337 7.51466 7.60789 7.68794 7.88051 7.93067 8.30820 8.50199 8.93662 9.52939 11.02030 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.017830 B = 0.004776 C = 0.004119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.047703 B = 5860.753878 C = 6795.501548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.080 4.080 3 H 0.069 0.931 4 C -0.134 4.134 5 C 0.102 3.898 6 N -0.612 5.612 7 C 0.528 3.472 8 O -0.541 6.541 9 C 0.074 3.926 10 H 0.096 0.904 11 N -0.831 5.831 12 C -0.138 4.138 13 C 0.025 3.975 14 C -0.523 4.523 15 H 0.053 0.947 16 C 0.060 3.940 17 N -0.893 5.893 18 Si 0.892 3.108 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.123 3.877 23 C -0.074 4.074 24 C -0.142 4.142 25 C -0.141 4.141 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.065 0.935 33 H 0.353 0.647 34 H 0.345 0.655 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.017 0.983 38 H 0.018 0.982 39 H 0.262 0.738 40 H 0.090 0.910 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.062 0.938 45 H 0.054 0.946 46 H 0.055 0.945 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.318 12.987 -11.449 18.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.098 4.098 3 H 0.087 0.913 4 C -0.172 4.172 5 C -0.020 4.020 6 N -0.346 5.346 7 C 0.317 3.683 8 O -0.417 6.417 9 C -0.041 4.041 10 H 0.113 0.887 11 N -0.363 5.363 12 C -0.177 4.177 13 C -0.012 4.012 14 C -0.561 4.561 15 H 0.072 0.928 16 C -0.142 4.142 17 N -0.532 5.532 18 Si 0.719 3.281 19 H -0.202 1.202 20 H -0.212 1.212 21 H -0.202 1.202 22 C 0.000 4.000 23 C -0.074 4.074 24 C -0.199 4.199 25 C -0.198 4.198 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.114 0.886 32 H 0.084 0.916 33 H 0.169 0.831 34 H 0.158 0.842 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.036 0.964 38 H 0.036 0.964 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.073 0.927 46 H 0.074 0.926 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.705 13.391 -12.121 19.267 hybrid contribution -1.272 -1.435 1.003 2.164 sum -7.977 11.956 -11.118 18.171 Atomic orbital electron populations 1.21935 0.95184 1.02136 1.01453 1.21118 0.95696 0.98918 0.94078 0.91291 1.22055 0.95061 1.02243 0.97865 1.21841 0.94418 0.99288 0.86503 1.48018 1.43829 1.35909 1.06842 1.20862 0.77538 0.78228 0.91663 1.90611 1.57537 1.59719 1.33819 1.21505 0.91562 0.98183 0.92883 0.88663 1.58753 1.25381 1.34434 1.17720 1.22411 0.97425 0.97413 1.00495 1.19090 0.96777 0.96254 0.89048 1.21124 1.06572 1.26436 1.02017 0.92831 1.24994 0.95520 0.96671 0.96994 1.69937 1.26685 1.43956 1.12603 0.86663 0.81752 0.81449 0.78193 1.20242 1.21208 1.20227 1.21586 0.92527 0.98500 0.87394 1.20899 0.94891 0.96386 0.95272 1.21916 1.00664 0.94884 1.02422 1.21862 1.01207 1.00013 0.96745 0.92281 0.92802 0.92540 0.90609 0.90560 0.88574 0.91644 0.83146 0.84192 0.92399 0.92774 0.96442 0.96397 0.92829 0.89206 0.92061 0.92551 0.92929 0.91900 0.92683 0.92570 0.92015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.49 37.16 0.32 -0.95 16 2 C -0.08 -0.75 2.00 -90.57 -0.18 -0.93 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.13 -1.45 5.02 -26.61 -0.13 -1.59 16 5 C 0.10 1.23 5.76 -3.71 -0.02 1.21 16 6 N -0.61 -8.51 2.41 -172.77 -0.42 -8.93 16 7 C 0.53 9.13 6.95 -10.98 -0.08 9.05 16 8 O -0.54 -10.89 15.66 5.56 0.09 -10.80 16 9 C 0.07 1.29 2.35 -68.87 -0.16 1.12 16 10 H 0.10 1.59 6.80 -51.93 -0.35 1.23 16 11 N -0.83 -14.75 8.94 -5.66 -0.05 -14.80 16 12 C -0.14 -2.71 4.45 -26.73 -0.12 -2.83 16 13 C 0.03 0.61 4.74 -27.89 -0.13 0.48 16 14 C -0.52 -14.21 9.11 -34.44 -0.31 -14.52 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 16 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 17 N -0.89 -25.84 13.29 55.43 0.74 -25.11 16 18 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 22 C 0.12 1.50 5.11 -3.71 -0.02 1.48 16 23 C -0.07 -0.75 0.55 -154.39 -0.08 -0.84 16 24 C -0.14 -1.66 7.66 37.16 0.28 -1.37 16 25 C -0.14 -1.18 8.10 37.16 0.30 -0.88 16 26 H 0.06 0.54 6.46 -51.93 -0.34 0.20 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.43 6.40 -51.92 -0.33 0.09 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.08 0.96 6.34 -51.93 -0.33 0.63 16 31 H 0.10 1.27 4.84 -51.93 -0.25 1.02 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.35 6.23 7.55 -39.29 -0.30 5.93 16 34 H 0.34 6.21 8.58 -39.29 -0.34 5.88 16 35 H 0.06 1.09 6.97 -51.93 -0.36 0.73 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.09 1.26 7.01 -51.93 -0.36 0.90 16 41 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.59 6.47 -51.93 -0.34 0.25 16 43 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.87 5.97 -51.93 -0.31 0.56 16 45 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.06 0.48 6.40 -51.93 -0.33 0.14 16 LS Contribution 351.01 15.07 5.29 5.29 Total: -1.00 -30.25 351.01 -7.88 -38.13 By element: Atomic # 1 Polarization: 17.15 SS G_CDS: -8.06 Total: 9.09 kcal Atomic # 6 Polarization: -8.56 SS G_CDS: -0.44 Total: -9.00 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.27 Total: -48.83 kcal Atomic # 8 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.25 -7.88 -38.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424194249.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.636 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds