Wall clock time and date at job start Tue Mar 31 2020 06:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53191 * 109.31132 * 181.37889 * 4 2 1 6 6 N 1.46921 * 108.77411 * 305.35957 * 5 4 2 7 7 C 1.34777 * 120.63225 * 233.58641 * 6 5 4 8 8 O 1.21282 * 119.99945 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.99997 * 0.02846 * 7 6 5 10 10 H 1.08997 * 109.46917 * 39.99504 * 9 7 6 11 11 N 1.46900 * 109.46957 * 159.99761 * 9 7 6 12 12 C 1.53001 * 109.46973 * 279.99844 * 9 7 6 13 13 C 1.53001 * 109.47246 * 175.00055 * 12 9 7 14 14 C 1.50693 * 109.47076 * 179.97438 * 13 12 9 15 15 H 1.07999 * 119.99975 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99646 * 180.02562 * 14 13 12 17 17 N 1.31522 * 119.99731 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 120.00294 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47437 * 90.00218 * 18 16 14 20 20 H 1.48500 * 109.47310 * 210.00458 * 18 16 14 21 21 H 1.48509 * 109.47148 * 330.00341 * 18 16 14 22 22 C 1.46925 * 118.73795 * 53.61317 * 6 5 4 23 23 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 24 24 C 1.52996 * 109.49670 * 298.58564 * 23 2 1 25 25 C 1.53003 * 109.49313 * 58.64695 * 23 2 1 26 26 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 28 28 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 29 29 H 1.09004 * 109.49679 * 301.32867 * 4 2 1 30 30 H 1.08994 * 109.49744 * 61.42383 * 4 2 1 31 31 H 1.09002 * 109.58035 * 185.57574 * 5 4 2 32 32 H 1.09002 * 109.58818 * 65.15445 * 5 4 2 33 33 H 1.00901 * 110.99859 * 296.04212 * 11 9 7 34 34 H 1.00899 * 111.00235 * 60.00300 * 11 9 7 35 35 H 1.08999 * 109.46883 * 295.00019 * 12 9 7 36 36 H 1.08998 * 109.47192 * 54.99494 * 12 9 7 37 37 H 1.09005 * 109.46733 * 300.00362 * 13 12 9 38 38 H 1.08997 * 109.46745 * 59.99574 * 13 12 9 39 39 H 0.96997 * 119.99458 * 179.97438 * 17 16 14 40 40 H 1.09003 * 109.59222 * 186.59958 * 22 6 5 41 41 H 1.09000 * 109.58691 * 66.17848 * 22 6 5 42 42 H 1.08999 * 109.47538 * 59.99839 * 24 23 2 43 43 H 1.09005 * 109.46692 * 179.97438 * 24 23 2 44 44 H 1.08999 * 109.46838 * 299.99459 * 24 23 2 45 45 H 1.09005 * 109.47408 * 60.00203 * 25 23 2 46 46 H 1.09001 * 109.46808 * 179.97438 * 25 23 2 47 47 H 1.08996 * 109.47101 * 300.00051 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 3.5711 -0.6890 1.2645 6 7 4.0675 -1.2494 0.0004 7 6 4.9616 -2.2580 0.0005 8 8 5.3641 -2.7117 -1.0497 9 6 5.4610 -2.8220 1.3057 10 1 4.6347 -2.8860 2.0137 11 7 6.0166 -4.1629 1.0790 12 6 6.5492 -1.9083 1.8730 13 6 6.9683 -2.4118 3.2557 14 6 8.0405 -1.5121 3.8142 15 1 8.3885 -0.6661 3.2401 16 6 8.5778 -1.7697 5.0575 17 7 9.5140 -0.9849 5.5447 18 14 7.9763 -3.2334 6.0500 19 1 8.7988 -4.4256 5.7221 20 1 8.0970 -2.9322 7.4991 21 1 6.5548 -3.5062 5.7179 22 6 3.5714 -0.6891 -1.2639 23 6 2.0399 -0.7210 -1.2500 24 6 1.5593 -2.1734 -1.2335 25 6 1.5024 -0.0194 -2.4990 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 1.6569 -0.2207 2.1399 30 1 1.6973 -1.7556 1.2384 31 1 3.9411 -1.2850 2.0988 32 1 3.9142 0.3405 1.3677 33 1 5.3017 -4.8022 0.7652 34 1 6.7848 -4.1303 0.4257 35 1 7.4121 -1.9143 1.2072 36 1 6.1629 -0.8926 1.9579 37 1 6.1052 -2.4058 3.9215 38 1 7.3545 -3.4275 3.1707 39 1 9.8917 -1.1659 6.4196 40 1 3.9416 -1.2851 -2.0981 41 1 3.9146 0.3403 -1.3670 42 1 0.4697 -2.1956 -1.2206 43 1 1.9224 -2.6863 -2.1242 44 1 1.9434 -2.6730 -0.3441 45 1 1.8459 1.0150 -2.5110 46 1 1.8661 -0.5330 -3.3890 47 1 0.4127 -0.0403 -2.4868 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424194251.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:42 Heat of formation + Delta-G solvation = -59.684097 kcal Electronic energy + Delta-G solvation = -23788.734020 eV Core-core repulsion = 20584.311808 eV Total energy + Delta-G solvation = -3204.422212 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.77862 -38.71520 -35.42837 -34.71771 -32.86275 -32.65090 -30.48473 -28.83171 -27.83054 -27.54952 -26.04410 -23.96492 -22.65184 -22.32770 -20.22800 -19.18139 -18.35172 -17.26559 -16.70848 -16.06939 -15.65234 -15.57348 -15.03647 -14.46246 -14.33491 -14.08493 -13.98650 -13.64712 -13.43061 -13.23861 -12.73028 -12.53902 -12.42621 -12.26251 -12.16579 -11.95687 -11.91540 -11.66793 -11.42481 -11.29437 -10.96029 -10.86700 -10.84092 -10.53866 -10.38550 -10.19517 -9.97211 -9.69744 -9.56282 -9.10701 -8.60283 -8.49703 -8.35808 -5.98830 -3.96322 2.73926 3.04298 3.37873 3.44368 3.49545 4.32370 4.44176 4.47189 4.51779 4.71237 4.76957 4.89753 4.98313 5.07624 5.15280 5.22847 5.31123 5.34964 5.38445 5.43370 5.44499 5.57298 5.64295 5.65363 5.68250 5.68874 5.72739 5.74165 5.78804 5.83377 5.94197 6.04902 6.12160 6.27092 6.30646 6.46744 6.54957 6.88279 7.26943 7.38905 7.47123 7.58206 7.68219 7.87187 8.26413 8.58966 9.06061 9.64258 11.14715 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024590 B = 0.004092 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.407677 B = 6840.430657 C = 7238.804619 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 H 0.072 0.928 4 C -0.134 4.134 5 C 0.101 3.899 6 N -0.607 5.607 7 C 0.487 3.513 8 O -0.555 6.555 9 C 0.074 3.926 10 H 0.098 0.902 11 N -0.811 5.811 12 C -0.088 4.088 13 C -0.003 4.003 14 C -0.521 4.521 15 H 0.069 0.931 16 C 0.066 3.934 17 N -0.907 5.907 18 Si 0.882 3.118 19 H -0.277 1.277 20 H -0.291 1.291 21 H -0.264 1.264 22 C 0.118 3.882 23 C -0.073 4.073 24 C -0.139 4.139 25 C -0.141 4.141 26 H 0.056 0.944 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.334 0.666 34 H 0.349 0.651 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.012 0.988 38 H 0.029 0.971 39 H 0.262 0.738 40 H 0.089 0.911 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.487 1.006 -12.766 24.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.100 4.100 3 H 0.090 0.910 4 C -0.172 4.172 5 C -0.022 4.022 6 N -0.340 5.340 7 C 0.274 3.726 8 O -0.433 6.433 9 C -0.042 4.042 10 H 0.115 0.885 11 N -0.339 5.339 12 C -0.126 4.126 13 C -0.041 4.041 14 C -0.559 4.559 15 H 0.087 0.913 16 C -0.135 4.135 17 N -0.546 5.546 18 Si 0.710 3.290 19 H -0.203 1.203 20 H -0.217 1.217 21 H -0.189 1.189 22 C -0.005 4.005 23 C -0.074 4.074 24 C -0.196 4.196 25 C -0.199 4.199 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.095 0.905 30 H 0.089 0.911 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.146 0.854 34 H 0.164 0.836 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.030 0.970 38 H 0.047 0.953 39 H 0.071 0.929 40 H 0.107 0.893 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -19.951 0.779 -12.375 23.490 hybrid contribution -0.540 -0.407 -0.381 0.776 sum -20.491 0.373 -12.756 24.140 Atomic orbital electron populations 1.21932 0.95136 1.01944 1.01645 1.21133 0.95694 0.99237 0.93931 0.90995 1.22067 0.95260 1.01691 0.98146 1.21897 0.93923 1.00167 0.86219 1.48159 1.43311 1.35588 1.06928 1.22557 0.77724 0.78821 0.93492 1.90632 1.58034 1.60566 1.34042 1.21883 0.99384 0.90992 0.91928 0.88470 1.59054 1.13339 1.06622 1.54916 1.21485 0.95290 0.96279 0.99583 1.19476 0.96400 0.97480 0.90728 1.21177 1.19656 1.12622 1.02403 0.91323 1.25014 0.94595 0.96320 0.97564 1.69929 1.27625 1.38567 1.18465 0.86738 0.80121 0.83304 0.78848 1.20286 1.21719 1.18906 1.21636 0.92484 0.98873 0.87467 1.20891 0.94891 0.96211 0.95408 1.21895 1.00635 0.95073 1.02047 1.21866 1.01177 1.00219 0.96640 0.92461 0.92732 0.92425 0.90473 0.91133 0.88607 0.90892 0.85421 0.83649 0.92267 0.92132 0.96985 0.95260 0.92853 0.89258 0.91820 0.92514 0.92937 0.92357 0.92504 0.92554 0.91987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.49 37.16 0.32 -0.72 16 2 C -0.08 -0.66 2.00 -90.57 -0.18 -0.84 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 4 C -0.13 -1.18 5.02 -26.61 -0.13 -1.32 16 5 C 0.10 1.12 5.58 -3.71 -0.02 1.10 16 6 N -0.61 -7.79 2.41 -172.77 -0.42 -8.21 16 7 C 0.49 7.63 6.94 -10.98 -0.08 7.56 16 8 O -0.55 -10.16 15.66 5.56 0.09 -10.07 16 9 C 0.07 1.19 2.30 -68.86 -0.16 1.03 16 10 H 0.10 1.45 6.54 -51.93 -0.34 1.11 16 11 N -0.81 -13.00 8.44 -5.65 -0.05 -13.05 16 12 C -0.09 -1.72 4.55 -26.73 -0.12 -1.84 16 13 C 0.00 -0.08 3.93 -27.89 -0.11 -0.19 16 14 C -0.52 -14.84 9.66 -34.44 -0.33 -15.18 16 15 H 0.07 2.11 7.99 -52.49 -0.42 1.69 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.91 -28.17 13.96 55.43 0.77 -27.40 16 18 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 19 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 21 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 22 C 0.12 1.35 5.11 -3.71 -0.02 1.34 16 23 C -0.07 -0.65 0.55 -154.39 -0.08 -0.74 16 24 C -0.14 -1.32 7.66 37.16 0.28 -1.03 16 25 C -0.14 -1.06 8.10 37.16 0.30 -0.76 16 26 H 0.06 0.40 6.46 -51.93 -0.34 0.07 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.37 6.40 -51.92 -0.33 0.03 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.65 6.34 -51.93 -0.33 0.32 16 31 H 0.10 1.13 5.19 -51.93 -0.27 0.86 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.33 4.64 9.06 -39.29 -0.36 4.28 16 34 H 0.35 5.76 8.58 -39.29 -0.34 5.42 16 35 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.06 1.14 7.20 -51.93 -0.37 0.76 16 37 H 0.01 0.28 7.20 -51.93 -0.37 -0.10 16 38 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 39 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 40 H 0.09 1.18 7.01 -51.93 -0.36 0.81 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.46 6.47 -51.93 -0.34 0.13 16 43 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.06 0.62 5.97 -51.93 -0.31 0.31 16 45 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.41 6.40 -51.93 -0.33 0.08 16 LS Contribution 349.61 15.07 5.27 5.27 Total: -1.00 -32.23 349.61 -7.59 -39.82 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -8.15 Total: 6.07 kcal Atomic # 6 Polarization: -9.33 SS G_CDS: -0.43 Total: -9.77 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.31 Total: -48.66 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.23 -7.59 -39.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424194251.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.867 kcal (2) G-P(sol) polarization free energy of solvation -32.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds