Wall clock time and date at job start Tue Mar 31 2020 06:42:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.45959 * 2 1 4 4 C 1.53036 * 109.45277 * 240.03080 * 2 1 3 5 5 C 1.53622 * 109.24613 * 178.50017 * 4 2 1 6 6 N 1.46931 * 108.54424 * 54.85288 * 5 4 2 7 7 C 1.34777 * 120.63086 * 126.36867 * 6 5 4 8 8 O 1.21283 * 119.99750 * 179.72075 * 7 6 5 9 9 C 1.50702 * 119.99928 * 0.02562 * 7 6 5 10 10 H 1.09003 * 109.46824 * 319.71785 * 9 7 6 11 11 N 1.46900 * 109.46704 * 199.72391 * 9 7 6 12 12 C 1.53002 * 109.47121 * 79.72099 * 9 7 6 13 13 C 1.52996 * 109.46946 * 185.00076 * 12 9 7 14 14 C 1.50694 * 109.47332 * 179.97438 * 13 12 9 15 15 H 1.08000 * 119.99886 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00223 * 179.97438 * 14 13 12 17 17 N 1.31512 * 119.99937 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99885 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47515 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47340 * 120.00537 * 18 16 14 21 21 H 1.48506 * 109.47296 * 240.00251 * 18 16 14 22 22 C 1.46925 * 118.73924 * 306.09826 * 6 5 4 23 23 C 1.53046 * 109.45875 * 119.96930 * 2 1 3 24 24 C 1.53000 * 109.49681 * 61.42106 * 23 2 1 25 25 C 1.52997 * 109.52033 * 301.34096 * 23 2 1 26 26 H 1.08995 * 109.47408 * 300.03524 * 1 2 3 27 27 H 1.09008 * 109.46530 * 60.03366 * 1 2 3 28 28 H 1.09000 * 109.47098 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.49561 * 298.57476 * 4 2 1 30 30 H 1.08996 * 109.50266 * 58.63522 * 4 2 1 31 31 H 1.09000 * 109.74013 * 295.12181 * 5 4 2 32 32 H 1.08995 * 109.66828 * 174.54938 * 5 4 2 33 33 H 1.00898 * 110.99811 * 299.99578 * 11 9 7 34 34 H 1.00898 * 111.00326 * 63.95847 * 11 9 7 35 35 H 1.08996 * 109.46933 * 304.99916 * 12 9 7 36 36 H 1.08998 * 109.47170 * 65.00270 * 12 9 7 37 37 H 1.09000 * 109.47119 * 300.00211 * 13 12 9 38 38 H 1.09002 * 109.47419 * 59.99484 * 13 12 9 39 39 H 0.97004 * 119.99765 * 179.97438 * 17 16 14 40 40 H 1.08994 * 109.58707 * 173.64258 * 22 6 5 41 41 H 1.09001 * 109.58947 * 293.93117 * 22 6 5 42 42 H 1.08996 * 109.46822 * 179.84076 * 24 23 2 43 43 H 1.09006 * 109.47088 * 299.83974 * 24 23 2 44 44 H 1.08994 * 109.47142 * 59.83847 * 24 23 2 45 45 H 1.08997 * 109.47523 * 300.14146 * 25 23 2 46 46 H 1.09005 * 109.47545 * 60.14837 * 25 23 2 47 47 H 1.09002 * 109.47139 * 180.14559 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0396 -0.7208 -1.2501 5 6 3.5754 -0.6853 -1.2644 6 7 4.0677 -1.2493 -0.0001 7 6 4.9617 -2.2579 -0.0001 8 8 5.3642 -2.7115 1.0502 9 6 5.4663 -2.8174 -1.3053 10 1 4.6419 -2.8836 -2.0152 11 7 6.0270 -4.1563 -1.0797 12 6 6.5519 -1.8980 -1.8685 13 6 6.9760 -2.3973 -3.2512 14 6 8.0448 -1.4914 -3.8063 15 1 8.3875 -0.6446 -3.2303 16 6 8.5857 -1.7444 -5.0490 17 7 8.1687 -2.7759 -5.7501 18 14 9.9110 -0.6219 -5.7368 19 1 10.2019 0.4575 -4.7592 20 1 11.1455 -1.4086 -5.9866 21 1 9.4398 -0.0224 -7.0111 22 6 3.5714 -0.6889 1.2642 23 6 2.0398 -0.7209 1.2501 24 6 1.5594 -2.1734 1.2336 25 6 1.5029 -0.0195 2.4994 26 1 -0.3634 0.5143 0.8896 27 1 -0.3633 0.5134 -0.8904 28 1 -0.3633 -1.0277 0.0005 29 1 1.6974 -1.7557 -1.2382 30 1 1.6566 -0.2212 -2.1398 31 1 3.9189 0.3445 -1.3632 32 1 3.9483 -1.2788 -2.0990 33 1 6.7936 -4.1217 -0.4246 34 1 5.3143 -4.7992 -0.7687 35 1 6.1615 -0.8839 -1.9524 36 1 7.4135 -1.9016 -1.2009 37 1 7.3664 -3.4115 -3.1672 38 1 6.1144 -2.3938 -3.9188 39 1 8.5490 -2.9536 -6.6246 40 1 3.9416 -1.2849 2.0983 41 1 3.9165 0.3397 1.3684 42 1 1.9251 -2.6871 2.1227 43 1 0.4696 -2.1955 1.2236 44 1 1.9411 -2.6722 0.3429 45 1 1.8445 1.0155 2.5101 46 1 0.4132 -0.0425 2.4890 47 1 1.8686 -0.5320 3.3892 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424194253.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:45 Heat of formation + Delta-G solvation = -62.709034 kcal Electronic energy + Delta-G solvation = -23727.370944 eV Core-core repulsion = 20522.817561 eV Total energy + Delta-G solvation = -3204.553383 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.71002 -38.64324 -35.29231 -34.64552 -32.86230 -32.62891 -30.09339 -28.76011 -27.66872 -27.50970 -25.78448 -23.94964 -22.74656 -22.28638 -20.37239 -19.07729 -18.31285 -17.18812 -16.34899 -15.89374 -15.54476 -15.53029 -14.94934 -14.43765 -14.41840 -14.15487 -13.91207 -13.59386 -13.36070 -13.19929 -12.61157 -12.34117 -12.30834 -12.13561 -12.02060 -11.88616 -11.83881 -11.51998 -11.36871 -11.23494 -10.90580 -10.83243 -10.63362 -10.55099 -10.41976 -10.34334 -9.97428 -9.77446 -9.35037 -8.97913 -8.54551 -8.33101 -8.17608 -5.93488 -3.95452 2.81457 3.10951 3.34044 3.41790 3.45692 4.36417 4.48739 4.49799 4.51741 4.79157 4.82796 5.00758 5.02648 5.11774 5.21089 5.27095 5.34631 5.42087 5.45375 5.46624 5.51802 5.62225 5.67970 5.69462 5.73073 5.74609 5.77203 5.83217 5.86827 5.87616 5.98744 6.08710 6.15813 6.31512 6.44290 6.57052 6.68952 7.09328 7.39714 7.57324 7.76685 7.82157 7.96725 8.13767 8.33991 8.49263 9.12732 9.67801 11.17427 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024211 B = 0.003899 C = 0.003658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.218913 B = 7179.466666 C = 7652.282524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.081 4.081 3 H 0.071 0.929 4 C -0.133 4.133 5 C 0.101 3.899 6 N -0.607 5.607 7 C 0.485 3.515 8 O -0.557 6.557 9 C 0.077 3.923 10 H 0.097 0.903 11 N -0.807 5.807 12 C -0.096 4.096 13 C 0.032 3.968 14 C -0.521 4.521 15 H 0.052 0.948 16 C 0.058 3.942 17 N -0.892 5.892 18 Si 0.888 3.112 19 H -0.274 1.274 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.118 3.882 23 C -0.073 4.073 24 C -0.139 4.139 25 C -0.141 4.141 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.097 0.903 33 H 0.347 0.653 34 H 0.333 0.667 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.035 0.965 38 H 0.012 0.988 39 H 0.259 0.741 40 H 0.088 0.912 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.061 0.939 47 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.219 5.049 12.972 22.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.100 4.100 3 H 0.089 0.911 4 C -0.171 4.171 5 C -0.021 4.021 6 N -0.341 5.341 7 C 0.273 3.727 8 O -0.435 6.435 9 C -0.038 4.038 10 H 0.115 0.885 11 N -0.335 5.335 12 C -0.134 4.134 13 C -0.005 4.005 14 C -0.560 4.560 15 H 0.070 0.930 16 C -0.143 4.143 17 N -0.532 5.532 18 Si 0.716 3.284 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.005 4.005 23 C -0.074 4.074 24 C -0.197 4.197 25 C -0.199 4.199 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.116 0.884 33 H 0.161 0.839 34 H 0.144 0.856 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.031 0.969 39 H 0.068 0.932 40 H 0.107 0.893 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.767 4.705 12.571 21.478 hybrid contribution 0.380 0.871 0.524 1.085 sum -16.387 5.576 13.095 21.705 Atomic orbital electron populations 1.21933 0.95161 1.01962 1.01599 1.21130 0.95669 0.99192 0.93994 0.91072 1.22136 0.95262 1.01706 0.98027 1.21981 0.93856 1.00003 0.86307 1.48178 1.43484 1.35540 1.06860 1.22701 0.77598 0.78732 0.93654 1.90622 1.58137 1.60601 1.34133 1.21858 0.99326 0.91042 0.91580 0.88489 1.59018 1.13245 1.06470 1.54758 1.21674 0.94986 0.95953 1.00815 1.19012 0.95907 0.97492 0.88126 1.21313 1.21019 1.11733 1.01885 0.92962 1.24985 0.96877 0.95316 0.97122 1.69985 1.42958 1.27849 1.12377 0.86608 0.82009 0.80879 0.78905 1.19864 1.21065 1.21102 1.21622 0.92478 0.98787 0.87581 1.20888 0.94902 0.96231 0.95363 1.21894 1.00606 0.95051 1.02101 1.21864 1.01168 1.00177 0.96672 0.92462 0.92748 0.92435 0.91070 0.90534 0.91044 0.88441 0.83882 0.85559 0.92781 0.92904 0.94683 0.96934 0.93170 0.89321 0.91946 0.92953 0.92529 0.92285 0.92554 0.92008 0.92574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 8.49 37.16 0.32 -0.77 16 2 C -0.08 -0.69 2.00 -90.58 -0.18 -0.87 16 3 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 4 C -0.13 -1.25 5.03 -26.39 -0.13 -1.38 16 5 C 0.10 1.18 5.60 -3.48 -0.02 1.16 16 6 N -0.61 -8.12 2.41 -172.50 -0.41 -8.53 16 7 C 0.49 7.94 6.94 -10.98 -0.08 7.87 16 8 O -0.56 -10.54 15.66 5.55 0.09 -10.45 16 9 C 0.08 1.33 2.30 -68.86 -0.16 1.17 16 10 H 0.10 1.58 6.55 -51.93 -0.34 1.24 16 11 N -0.81 -13.95 8.44 -5.65 -0.05 -14.00 16 12 C -0.10 -1.96 4.54 -26.73 -0.12 -2.08 16 13 C 0.03 0.81 4.86 -27.89 -0.14 0.67 16 14 C -0.52 -14.71 9.11 -34.44 -0.31 -15.03 16 15 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.84 13.29 55.43 0.74 -26.10 16 18 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 19 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 C 0.12 1.40 5.11 -3.71 -0.02 1.38 16 23 C -0.07 -0.68 0.55 -154.39 -0.08 -0.76 16 24 C -0.14 -1.38 7.66 37.16 0.28 -1.09 16 25 C -0.14 -1.09 8.09 37.16 0.30 -0.79 16 26 H 0.06 0.38 6.41 -51.93 -0.33 0.05 16 27 H 0.05 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.06 0.42 6.47 -51.93 -0.34 0.09 16 29 H 0.07 0.70 6.33 -51.93 -0.33 0.37 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.10 1.24 5.18 -51.93 -0.27 0.97 16 33 H 0.35 6.12 8.58 -39.29 -0.34 5.78 16 34 H 0.33 5.03 9.06 -39.29 -0.36 4.67 16 35 H 0.05 1.04 7.17 -51.93 -0.37 0.67 16 36 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.03 0.97 7.75 -51.93 -0.40 0.57 16 38 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 40 H 0.09 1.20 7.00 -51.93 -0.36 0.84 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.48 6.47 -51.93 -0.34 0.15 16 44 H 0.06 0.66 5.97 -51.93 -0.31 0.35 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 0.43 6.42 -51.93 -0.33 0.09 16 47 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 353.22 15.07 5.32 5.32 Total: -1.00 -31.58 353.22 -7.96 -39.54 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -8.19 Total: 6.48 kcal Atomic # 6 Polarization: -8.51 SS G_CDS: -0.44 Total: -8.95 kcal Atomic # 7 Polarization: -48.91 SS G_CDS: 0.27 Total: -48.64 kcal Atomic # 8 Polarization: -10.54 SS G_CDS: 0.09 Total: -10.45 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.58 -7.96 -39.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424194253.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.170 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds