Wall clock time and date at job start Tue Mar 31 2020 06:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47457 * 2 1 4 4 C 1.53007 * 109.46938 * 240.00200 * 2 1 3 5 5 C 1.53002 * 109.46938 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.46809 * 60.00403 * 5 4 2 7 7 C 1.52994 * 109.47203 * 299.99441 * 6 5 4 8 8 C 1.52997 * 109.47210 * 60.00285 * 7 6 5 9 9 H 1.08994 * 109.47433 * 179.97438 * 8 7 6 10 10 N 1.46500 * 109.46885 * 60.00134 * 8 7 6 11 11 C 1.46503 * 119.99944 * 247.70092 * 10 8 7 12 12 C 1.34774 * 120.00333 * 67.70081 * 10 8 7 13 13 O 1.21280 * 119.99842 * 359.97438 * 12 10 8 14 14 C 1.50696 * 120.00316 * 179.97438 * 12 10 8 15 15 H 1.09006 * 109.47026 * 39.99783 * 14 12 10 16 16 N 1.46900 * 109.47142 * 159.99740 * 14 12 10 17 17 C 1.52997 * 109.47336 * 279.99865 * 14 12 10 18 18 C 1.53004 * 109.47365 * 175.00085 * 17 14 12 19 19 C 1.50696 * 109.47139 * 180.02562 * 18 17 14 20 20 H 1.08004 * 120.00051 * 359.97438 * 19 18 17 21 21 C 1.37875 * 120.00048 * 179.97438 * 19 18 17 22 22 N 1.31510 * 119.99923 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99908 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47611 * 60.00063 * 23 21 19 25 25 H 1.48507 * 109.47031 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47231 * 299.99514 * 23 21 19 27 27 H 1.09002 * 109.46860 * 332.31111 * 1 2 3 28 28 H 1.09001 * 109.46879 * 92.31117 * 1 2 3 29 29 H 1.08993 * 109.46942 * 212.31009 * 1 2 3 30 30 H 1.08997 * 109.46884 * 300.00151 * 4 2 1 31 31 H 1.08999 * 109.46976 * 59.99822 * 4 2 1 32 32 H 1.08997 * 109.47457 * 299.99800 * 5 4 2 33 33 H 1.09004 * 109.46545 * 179.97438 * 5 4 2 34 34 H 1.09006 * 109.46651 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47500 * 60.00224 * 6 5 4 36 36 H 1.09005 * 109.47637 * 300.00267 * 7 6 5 37 37 H 1.09005 * 109.47457 * 180.02562 * 7 6 5 38 38 H 1.08991 * 109.47458 * 96.05658 * 11 10 8 39 39 H 1.09006 * 109.47289 * 216.05989 * 11 10 8 40 40 H 1.09009 * 109.47147 * 336.05489 * 11 10 8 41 41 H 1.00897 * 111.00257 * 60.00296 * 16 14 12 42 42 H 1.00901 * 110.99931 * 183.95578 * 16 14 12 43 43 H 1.08996 * 109.47107 * 295.00127 * 17 14 12 44 44 H 1.09003 * 109.47185 * 54.99731 * 17 14 12 45 45 H 1.09005 * 109.46507 * 299.99466 * 18 17 14 46 46 H 1.08997 * 109.46922 * 59.99912 * 18 17 14 47 47 H 0.96998 * 120.00106 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5700 -0.7218 -1.2490 6 6 4.0794 -1.4436 0.0002 7 6 3.5695 -0.7224 1.2494 8 6 2.0395 -0.7217 1.2492 9 1 1.6762 -0.2084 2.1394 10 7 1.5507 -2.1027 1.2488 11 6 0.8526 -2.6324 0.0747 12 6 1.7431 -2.8860 2.3285 13 8 2.3213 -2.4478 3.3003 14 6 1.2397 -4.3064 2.3284 15 1 1.4127 -4.7531 1.3492 16 7 1.9548 -5.0795 3.3526 17 6 -0.2591 -4.3164 2.6358 18 6 -0.7954 -5.7441 2.5133 19 6 -2.2717 -5.7538 2.8155 20 1 -2.7769 -4.8338 3.0700 21 6 -2.9775 -6.9372 2.7671 22 7 -2.3625 -8.0575 2.4567 23 14 -4.8077 -6.9491 3.1410 24 1 -5.5158 -6.0695 2.1766 25 1 -5.3285 -8.3347 3.0210 26 1 -5.0340 -6.4527 4.5221 27 1 -0.3633 0.9100 0.4775 28 1 -0.3633 -0.0414 -1.0269 29 1 -0.3633 -0.8685 0.5493 30 1 1.6766 -1.7489 -1.2493 31 1 1.6766 -0.2074 -2.1393 32 1 3.9338 0.3057 -1.2488 33 1 3.9333 -1.2360 -2.1388 34 1 5.1695 -1.4443 0.0001 35 1 3.7157 -2.4711 -0.0002 36 1 3.9333 0.3052 1.2498 37 1 3.9328 -1.2363 2.1394 38 1 1.5588 -3.1745 -0.5540 39 1 0.0602 -3.3079 0.3971 40 1 0.4192 -1.8086 -0.4926 41 1 1.8101 -4.6851 4.2699 42 1 1.6814 -6.0505 3.3292 43 1 -0.4244 -3.9520 3.6497 44 1 -0.7794 -3.6708 1.9283 45 1 -0.6301 -6.1085 1.4993 46 1 -0.2750 -6.3897 3.2208 47 1 -2.8590 -8.8901 2.4230 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424194651.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:58 Heat of formation + Delta-G solvation = -26.811490 kcal Electronic energy + Delta-G solvation = -24050.613526 eV Core-core repulsion = 20847.616777 eV Total energy + Delta-G solvation = -3202.996749 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.98557 -38.41850 -35.48943 -34.36154 -32.84476 -32.80041 -30.84351 -29.87471 -27.04582 -26.72626 -25.72793 -23.96194 -22.40464 -21.40596 -20.58328 -19.90119 -18.60392 -17.18532 -16.27881 -15.85602 -15.65428 -15.23095 -14.62659 -14.50813 -14.27738 -14.25105 -13.82883 -13.61106 -13.46129 -13.12395 -12.83745 -12.31972 -12.23273 -12.16441 -12.09294 -11.92265 -11.71177 -11.55900 -11.46605 -11.03683 -10.89775 -10.80261 -10.70439 -10.34296 -10.16963 -10.11595 -9.91873 -9.74539 -9.26402 -9.04771 -8.45852 -8.42645 -8.13101 -6.08566 -4.11809 3.00415 3.15081 3.28080 3.33103 3.35486 4.38867 4.43345 4.58983 4.60382 4.91699 5.00205 5.04976 5.17792 5.23556 5.27579 5.28774 5.32777 5.38306 5.43780 5.48322 5.57249 5.60388 5.67059 5.69654 5.79660 5.82327 5.90896 5.93501 5.97417 6.10727 6.15287 6.15895 6.24624 6.32089 6.34890 6.54817 6.78363 6.88700 7.44705 7.52044 7.61579 7.70282 7.88400 7.94214 8.31125 8.53485 8.93923 9.53093 11.02274 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023205 B = 0.004181 C = 0.003867 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1206.352608 B = 6694.688761 C = 7239.450899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.096 4.096 3 H 0.081 0.919 4 C -0.157 4.157 5 C -0.116 4.116 6 C -0.116 4.116 7 C -0.132 4.132 8 C 0.157 3.843 9 H 0.074 0.926 10 N -0.606 5.606 11 C 0.036 3.964 12 C 0.527 3.473 13 O -0.538 6.538 14 C 0.075 3.925 15 H 0.094 0.906 16 N -0.831 5.831 17 C -0.139 4.139 18 C 0.025 3.975 19 C -0.524 4.524 20 H 0.054 0.946 21 C 0.060 3.940 22 N -0.893 5.893 23 Si 0.892 3.108 24 H -0.277 1.277 25 H -0.287 1.287 26 H -0.277 1.277 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.056 0.944 39 H 0.080 0.920 40 H 0.107 0.893 41 H 0.345 0.655 42 H 0.353 0.647 43 H 0.054 0.946 44 H 0.058 0.942 45 H 0.018 0.982 46 H 0.017 0.983 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.212 14.839 -8.523 19.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.114 4.114 3 H 0.099 0.901 4 C -0.193 4.193 5 C -0.153 4.153 6 C -0.153 4.153 7 C -0.171 4.171 8 C 0.054 3.946 9 H 0.092 0.908 10 N -0.341 5.341 11 C -0.105 4.105 12 C 0.316 3.684 13 O -0.414 6.414 14 C -0.040 4.040 15 H 0.112 0.888 16 N -0.363 5.363 17 C -0.178 4.178 18 C -0.012 4.012 19 C -0.562 4.562 20 H 0.072 0.928 21 C -0.142 4.142 22 N -0.532 5.532 23 Si 0.720 3.280 24 H -0.202 1.202 25 H -0.212 1.212 26 H -0.202 1.202 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.119 0.881 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.098 0.902 40 H 0.125 0.875 41 H 0.158 0.842 42 H 0.168 0.832 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.036 0.964 46 H 0.036 0.964 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 10.163 15.084 -8.421 20.043 hybrid contribution -2.006 -0.242 0.483 2.078 sum 8.157 14.841 -7.938 18.703 Atomic orbital electron populations 1.22202 0.94836 1.02861 1.02270 1.21358 0.95891 0.99641 0.94546 0.90113 1.22629 0.96139 1.03839 0.96719 1.21504 0.95679 1.00328 0.97824 1.21458 0.99729 0.99938 0.94220 1.21898 0.95195 1.00798 0.99187 1.20928 0.93762 0.82080 0.97803 0.90773 1.47775 1.58084 1.12291 1.15971 1.22916 0.97479 1.01146 0.89005 1.20815 0.78104 0.87860 0.81649 1.90603 1.41809 1.75048 1.33916 1.21489 0.93990 0.90382 0.98136 0.88779 1.58752 1.62197 1.06788 1.08532 1.22423 0.92013 1.02381 1.01019 1.19091 0.95812 0.88979 0.97291 1.21139 0.93881 0.93763 1.47455 0.92811 1.24999 0.98428 0.95631 0.95149 1.69936 1.36218 0.98636 1.48393 0.86656 0.85363 0.77038 0.78947 1.20224 1.21215 1.20240 0.92651 0.92021 0.90803 0.88105 0.92057 0.92511 0.92256 0.92461 0.91787 0.91690 0.90376 0.92572 0.90210 0.87491 0.84229 0.83207 0.92764 0.92360 0.96378 0.96444 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.12 37.16 0.30 -1.20 16 2 C -0.10 -0.89 2.47 -90.62 -0.22 -1.11 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 4 C -0.16 -1.34 4.49 -26.73 -0.12 -1.46 16 5 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 6 C -0.12 -1.24 5.76 -26.74 -0.15 -1.40 16 7 C -0.13 -1.57 5.35 -26.74 -0.14 -1.71 16 8 C 0.16 1.90 2.19 -67.93 -0.15 1.75 16 9 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 10 N -0.61 -8.16 1.92 -174.64 -0.34 -8.50 16 11 C 0.04 0.42 6.31 59.85 0.38 0.80 16 12 C 0.53 8.94 6.67 -10.99 -0.07 8.86 16 13 O -0.54 -10.58 14.89 5.56 0.08 -10.50 16 14 C 0.08 1.31 2.38 -68.87 -0.16 1.14 16 15 H 0.09 1.57 7.30 -51.93 -0.38 1.20 16 16 N -0.83 -14.70 8.94 -5.66 -0.05 -14.75 16 17 C -0.14 -2.73 4.49 -26.73 -0.12 -2.85 16 18 C 0.03 0.61 4.74 -27.88 -0.13 0.48 16 19 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 20 H 0.05 1.44 7.74 -52.48 -0.41 1.03 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -25.88 13.29 55.43 0.74 -25.15 16 23 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.48 7.69 -51.93 -0.40 0.08 16 29 H 0.07 0.79 5.53 -51.93 -0.29 0.51 16 30 H 0.10 0.90 3.26 -52.81 -0.17 0.73 16 31 H 0.06 0.46 8.11 -51.93 -0.42 0.04 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.78 7.26 -51.93 -0.38 0.41 16 36 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.08 1.15 6.75 -51.93 -0.35 0.80 16 38 H 0.06 0.59 6.93 -51.93 -0.36 0.24 16 39 H 0.08 1.04 5.03 -51.93 -0.26 0.78 16 40 H 0.11 1.03 2.68 -51.92 -0.14 0.89 16 41 H 0.34 6.19 8.58 -39.29 -0.34 5.85 16 42 H 0.35 6.24 7.55 -39.29 -0.30 5.94 16 43 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 44 H 0.06 1.09 6.29 -51.93 -0.33 0.77 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.02 0.44 6.87 -51.93 -0.36 0.08 16 47 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 342.46 15.07 5.16 5.16 Total: -1.00 -30.19 342.46 -8.40 -38.59 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -7.81 Total: 9.92 kcal Atomic # 6 Polarization: -9.75 SS G_CDS: -1.17 Total: -10.92 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.35 Total: -48.40 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: 0.08 Total: -10.50 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -30.19 -8.40 -38.59 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424194651.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.781 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds