Wall clock time and date at job start Tue Mar 31 2020 06:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99801 * 2 1 3 5 5 C 1.53002 * 109.46978 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46891 * 60.00410 * 5 4 2 7 7 C 1.53000 * 109.47328 * 299.99597 * 6 5 4 8 8 C 1.52997 * 109.47060 * 60.00126 * 7 6 5 9 9 H 1.08998 * 109.47533 * 59.99948 * 8 7 6 10 10 N 1.46500 * 109.47473 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99711 * 60.00297 * 10 8 7 12 12 C 1.34769 * 120.00163 * 240.00131 * 10 8 7 13 13 O 1.21279 * 120.00303 * 0.02562 * 12 10 8 14 14 C 1.50701 * 119.99833 * 179.97438 * 12 10 8 15 15 H 1.08993 * 109.47525 * 40.00127 * 14 12 10 16 16 N 1.46908 * 109.47149 * 160.00131 * 14 12 10 17 17 C 1.53000 * 109.47312 * 279.99535 * 14 12 10 18 18 C 1.53001 * 109.47354 * 175.00066 * 17 14 12 19 19 C 1.50697 * 109.46916 * 180.02562 * 18 17 14 20 20 H 1.07997 * 120.00198 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99629 * 180.02562 * 19 18 17 22 22 N 1.31508 * 119.99781 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99839 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46822 * 90.00481 * 23 21 19 25 25 H 1.48501 * 109.46842 * 209.99947 * 23 21 19 26 26 H 1.48498 * 109.47535 * 330.00133 * 23 21 19 27 27 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 29 29 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 30 30 H 1.09002 * 109.47045 * 59.99942 * 4 2 1 31 31 H 1.09001 * 109.47375 * 299.99867 * 4 2 1 32 32 H 1.08992 * 109.47056 * 300.00064 * 5 4 2 33 33 H 1.09004 * 109.47006 * 180.02562 * 5 4 2 34 34 H 1.09004 * 109.47368 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47372 * 59.99964 * 6 5 4 36 36 H 1.09002 * 109.47398 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47194 * 300.00476 * 7 6 5 38 38 H 1.08993 * 109.47565 * 90.00263 * 11 10 8 39 39 H 1.09007 * 109.46761 * 210.00296 * 11 10 8 40 40 H 1.09002 * 109.46792 * 329.99948 * 11 10 8 41 41 H 1.00903 * 110.99775 * 296.04553 * 16 14 12 42 42 H 1.00902 * 110.99910 * 59.99873 * 16 14 12 43 43 H 1.08992 * 109.47384 * 295.00515 * 17 14 12 44 44 H 1.09010 * 109.46556 * 55.00275 * 17 14 12 45 45 H 1.08999 * 109.46944 * 300.00715 * 18 17 14 46 46 H 1.09000 * 109.46709 * 60.00210 * 18 17 14 47 47 H 0.97002 * 120.00494 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2494 6 6 4.0804 -1.4416 -0.0002 7 6 3.5705 -0.7204 1.2490 8 6 2.0405 -0.7209 1.2493 9 1 1.6774 -1.7486 1.2495 10 7 1.5521 -0.0298 2.4452 11 6 1.9055 1.3731 2.6761 12 6 0.7776 -0.6845 3.3328 13 8 0.4854 -1.8460 3.1419 14 6 0.2757 0.0263 4.5632 15 1 -0.0138 1.0442 4.3022 16 7 -0.8876 -0.6906 5.1026 17 6 1.3840 0.0658 5.6172 18 6 0.9184 0.8942 6.8163 19 6 2.0103 0.9335 7.8542 20 1 2.9432 0.4194 7.6762 21 6 1.8182 1.6258 9.0310 22 7 2.7712 1.6605 9.9365 23 14 0.2047 2.5155 9.3385 24 1 -0.7463 1.5965 10.0139 25 1 0.4486 3.6982 10.2028 26 1 -0.3707 2.9591 8.0434 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6766 -0.2075 -2.1392 31 1 1.6767 -1.7490 -1.2492 32 1 3.9329 0.3070 -1.2497 33 1 3.9334 -1.2342 -2.1397 34 1 5.1705 -1.4416 -0.0006 35 1 3.7175 -2.4694 0.0000 36 1 3.9345 -1.2337 2.1390 37 1 3.9334 0.3075 1.2488 38 1 1.1539 2.0171 2.2196 39 1 1.9463 1.5658 3.7482 40 1 2.8794 1.5802 2.2324 41 1 -1.6567 -0.6747 4.4497 42 1 -0.6448 -1.6375 5.3525 43 1 1.6118 -0.9490 5.9432 44 1 2.2778 0.5187 5.1878 45 1 0.6906 1.9090 6.4903 46 1 0.0246 0.4413 7.2456 47 1 2.6361 2.1473 10.7646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424194652.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:00 Heat of formation + Delta-G solvation = -66.759258 kcal Electronic energy + Delta-G solvation = -23591.510601 eV Core-core repulsion = 20386.781587 eV Total energy + Delta-G solvation = -3204.729014 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.55340 -38.56147 -35.38050 -35.07090 -32.77498 -32.72296 -30.52203 -30.24242 -27.12404 -26.91833 -26.13950 -23.79543 -22.25140 -21.47725 -20.23293 -19.76844 -19.02161 -17.18288 -16.75261 -16.34254 -15.56895 -15.34337 -14.92102 -14.76244 -14.36755 -14.14245 -14.09502 -13.42700 -13.36993 -13.01373 -12.94374 -12.58750 -12.56645 -12.27943 -12.20633 -12.10215 -11.82180 -11.67572 -11.35096 -11.13191 -10.94538 -10.86825 -10.73559 -10.55161 -10.42959 -10.24717 -9.94480 -9.70414 -9.56433 -9.10989 -8.59442 -8.49803 -8.34774 -5.99117 -3.96680 2.73224 3.03712 3.37829 3.44309 3.49657 4.34662 4.48922 4.51607 4.60266 4.70517 4.84257 4.90913 4.97118 5.09873 5.17325 5.19512 5.26179 5.28620 5.35405 5.39691 5.46365 5.48213 5.53409 5.67282 5.69929 5.74022 5.76322 5.78695 5.89089 5.90957 5.95647 6.05630 6.10762 6.23370 6.30313 6.48171 6.59683 6.88400 7.26421 7.38952 7.46792 7.57817 7.68607 7.86857 8.26911 8.58446 9.05640 9.63946 11.14379 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026416 B = 0.003862 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.712359 B = 7249.051123 C = 7667.066345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.072 0.928 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.130 4.130 8 C 0.143 3.857 9 H 0.097 0.903 10 N -0.607 5.607 11 C 0.066 3.934 12 C 0.486 3.514 13 O -0.554 6.554 14 C 0.074 3.926 15 H 0.097 0.903 16 N -0.812 5.812 17 C -0.089 4.089 18 C -0.004 4.004 19 C -0.521 4.521 20 H 0.069 0.931 21 C 0.066 3.934 22 N -0.906 5.906 23 Si 0.882 3.118 24 H -0.277 1.277 25 H -0.291 1.291 26 H -0.264 1.264 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.054 0.946 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.334 0.666 42 H 0.349 0.651 43 H 0.059 0.941 44 H 0.061 0.939 45 H 0.012 0.988 46 H 0.029 0.971 47 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.559 -1.890 -23.879 24.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.117 4.117 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.168 4.168 8 C 0.039 3.961 9 H 0.115 0.885 10 N -0.340 5.340 11 C -0.077 4.077 12 C 0.274 3.726 13 O -0.431 6.431 14 C -0.041 4.041 15 H 0.115 0.885 16 N -0.339 5.339 17 C -0.127 4.127 18 C -0.041 4.041 19 C -0.559 4.559 20 H 0.087 0.913 21 C -0.135 4.135 22 N -0.546 5.546 23 Si 0.710 3.290 24 H -0.203 1.203 25 H -0.217 1.217 26 H -0.189 1.189 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.082 0.918 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.146 0.854 42 H 0.163 0.837 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.030 0.970 46 H 0.048 0.952 47 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.680 -1.877 -23.188 23.324 hybrid contribution -0.533 -0.026 -0.569 0.780 sum -2.213 -1.903 -23.756 23.935 Atomic orbital electron populations 1.21755 0.94931 1.01915 1.01386 1.21443 0.96036 0.99900 0.94370 0.90971 1.21567 0.95497 1.00829 0.97069 1.21560 0.95583 1.00828 0.97823 1.21492 1.00395 0.99520 0.94025 1.21897 0.94995 1.01368 0.98541 1.21097 0.93404 0.97905 0.83693 0.88451 1.47968 1.50914 1.12607 1.22503 1.21987 1.00793 0.81142 1.03799 1.22582 0.77407 0.87527 0.85129 1.90626 1.58525 1.17145 1.76850 1.21869 0.93687 0.97850 0.90726 0.88521 1.59051 1.06843 1.22503 1.45550 1.21509 0.94246 1.01885 0.95042 1.19480 0.97480 0.94364 0.92788 1.21178 1.01465 1.32525 1.00720 0.91330 1.25015 0.96511 0.96084 0.95893 1.69923 1.33150 1.43135 1.08360 0.86736 0.84387 0.79402 0.78478 1.20291 1.21724 1.18892 0.92758 0.92715 0.92879 0.91789 0.91826 0.91932 0.91962 0.91666 0.91839 0.91356 0.91490 0.92747 0.89323 0.90962 0.85416 0.83680 0.92262 0.92011 0.96951 0.95244 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.04 37.16 0.34 -1.06 16 2 C -0.10 -0.91 2.11 -90.62 -0.19 -1.10 16 3 H 0.07 0.64 7.67 -51.93 -0.40 0.24 16 4 C -0.11 -0.88 5.20 -26.73 -0.14 -1.02 16 5 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 6 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 7 C -0.13 -1.32 5.18 -26.73 -0.14 -1.46 16 8 C 0.14 1.62 1.97 -67.93 -0.13 1.49 16 9 H 0.10 1.34 6.90 -51.93 -0.36 0.98 16 10 N -0.61 -7.70 1.99 -173.93 -0.35 -8.04 16 11 C 0.07 0.71 8.91 59.85 0.53 1.24 16 12 C 0.49 7.56 6.92 -10.99 -0.08 7.48 16 13 O -0.55 -10.04 15.58 5.56 0.09 -9.96 16 14 C 0.07 1.20 2.31 -68.86 -0.16 1.04 16 15 H 0.10 1.45 7.21 -51.93 -0.37 1.07 16 16 N -0.81 -13.00 8.44 -5.65 -0.05 -13.05 16 17 C -0.09 -1.72 4.45 -26.73 -0.12 -1.84 16 18 C 0.00 -0.09 3.93 -27.88 -0.11 -0.20 16 19 C -0.52 -14.82 9.66 -34.44 -0.33 -15.15 16 20 H 0.07 2.10 7.99 -52.49 -0.42 1.68 16 21 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 22 N -0.91 -28.13 13.96 55.43 0.77 -27.36 16 23 Si 0.88 22.01 27.47 -169.99 -4.67 17.34 16 24 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.05 0.60 7.60 -51.93 -0.39 0.20 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.63 6.66 -51.93 -0.35 0.29 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.09 1.09 4.83 -51.92 -0.25 0.83 16 40 H 0.07 0.66 6.43 -51.93 -0.33 0.33 16 41 H 0.33 4.64 9.06 -39.29 -0.36 4.29 16 42 H 0.35 5.75 8.58 -39.29 -0.34 5.41 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.06 1.15 6.43 -51.92 -0.33 0.81 16 45 H 0.01 0.29 7.20 -51.93 -0.37 -0.09 16 46 H 0.03 0.71 7.18 -51.93 -0.37 0.34 16 47 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 356.80 15.07 5.38 5.38 Total: -1.00 -32.10 356.80 -8.24 -40.33 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -8.47 Total: 6.28 kcal Atomic # 6 Polarization: -9.99 SS G_CDS: -0.94 Total: -10.93 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.38 Total: -48.45 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: 0.09 Total: -9.96 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.67 Total: 17.34 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.10 -8.24 -40.33 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424194652.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.425 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds