Wall clock time and date at job start Tue Mar 31 2020 06:08:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.52997 * 109.47232 * 239.99801 * 2 1 3 5 5 C 1.53002 * 109.46978 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.46891 * 60.00410 * 5 4 2 7 7 C 1.53000 * 109.47328 * 299.99597 * 6 5 4 8 8 C 1.52997 * 109.47060 * 60.00126 * 7 6 5 9 9 H 1.08998 * 109.47533 * 59.99948 * 8 7 6 10 10 N 1.46500 * 109.47473 * 180.02562 * 8 7 6 11 11 C 1.46502 * 119.99711 * 60.00297 * 10 8 7 12 12 C 1.34769 * 120.00163 * 240.00131 * 10 8 7 13 13 O 1.21279 * 120.00303 * 0.02562 * 12 10 8 14 14 C 1.50701 * 119.99833 * 179.97438 * 12 10 8 15 15 H 1.08993 * 109.47525 * 40.00127 * 14 12 10 16 16 N 1.46908 * 109.47149 * 160.00131 * 14 12 10 17 17 C 1.53000 * 109.47312 * 279.99535 * 14 12 10 18 18 C 1.53001 * 109.47354 * 175.00066 * 17 14 12 19 19 C 1.50697 * 109.46916 * 180.02562 * 18 17 14 20 20 H 1.07997 * 120.00198 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99629 * 180.02562 * 19 18 17 22 22 N 1.31508 * 119.99781 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99839 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.46822 * 90.00481 * 23 21 19 25 25 H 1.48501 * 109.46842 * 209.99947 * 23 21 19 26 26 H 1.48498 * 109.47535 * 330.00133 * 23 21 19 27 27 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 29 29 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 30 30 H 1.09002 * 109.47045 * 59.99942 * 4 2 1 31 31 H 1.09001 * 109.47375 * 299.99867 * 4 2 1 32 32 H 1.08992 * 109.47056 * 300.00064 * 5 4 2 33 33 H 1.09004 * 109.47006 * 180.02562 * 5 4 2 34 34 H 1.09004 * 109.47368 * 179.97438 * 6 5 4 35 35 H 1.09001 * 109.47372 * 59.99964 * 6 5 4 36 36 H 1.09002 * 109.47398 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47194 * 300.00476 * 7 6 5 38 38 H 1.08993 * 109.47565 * 90.00263 * 11 10 8 39 39 H 1.09007 * 109.46761 * 210.00296 * 11 10 8 40 40 H 1.09002 * 109.46792 * 329.99948 * 11 10 8 41 41 H 1.00903 * 110.99775 * 296.04553 * 16 14 12 42 42 H 1.00902 * 110.99910 * 59.99873 * 16 14 12 43 43 H 1.08992 * 109.47384 * 295.00515 * 17 14 12 44 44 H 1.09010 * 109.46556 * 55.00275 * 17 14 12 45 45 H 1.08999 * 109.46944 * 300.00715 * 18 17 14 46 46 H 1.09000 * 109.46709 * 60.00210 * 18 17 14 47 47 H 0.97002 * 120.00494 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7207 -1.2494 6 6 4.0804 -1.4416 -0.0002 7 6 3.5705 -0.7204 1.2490 8 6 2.0405 -0.7209 1.2493 9 1 1.6774 -1.7486 1.2495 10 7 1.5521 -0.0298 2.4452 11 6 1.9055 1.3731 2.6761 12 6 0.7776 -0.6845 3.3328 13 8 0.4854 -1.8460 3.1419 14 6 0.2757 0.0263 4.5632 15 1 -0.0138 1.0442 4.3022 16 7 -0.8876 -0.6906 5.1026 17 6 1.3840 0.0658 5.6172 18 6 0.9184 0.8942 6.8163 19 6 2.0103 0.9335 7.8542 20 1 2.9432 0.4194 7.6762 21 6 1.8182 1.6258 9.0310 22 7 2.7712 1.6605 9.9365 23 14 0.2047 2.5155 9.3385 24 1 -0.7463 1.5965 10.0139 25 1 0.4486 3.6982 10.2028 26 1 -0.3707 2.9591 8.0434 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6766 -0.2075 -2.1392 31 1 1.6767 -1.7490 -1.2492 32 1 3.9329 0.3070 -1.2497 33 1 3.9334 -1.2342 -2.1397 34 1 5.1705 -1.4416 -0.0006 35 1 3.7175 -2.4694 0.0000 36 1 3.9345 -1.2337 2.1390 37 1 3.9334 0.3075 1.2488 38 1 1.1539 2.0171 2.2196 39 1 1.9463 1.5658 3.7482 40 1 2.8794 1.5802 2.2324 41 1 -1.6567 -0.6747 4.4497 42 1 -0.6448 -1.6375 5.3525 43 1 1.6118 -0.9490 5.9432 44 1 2.2778 0.5187 5.1878 45 1 0.6906 1.9090 6.4903 46 1 0.0246 0.4413 7.2456 47 1 2.6361 2.1473 10.7646 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424194652.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:00 Heat of formation + Delta-G solvation = -87.368438 kcal Electronic energy + Delta-G solvation = -23592.404282 eV Core-core repulsion = 20386.781587 eV Total energy + Delta-G solvation = -3205.622695 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.62808 -39.52704 -36.89473 -36.06518 -34.78848 -33.48804 -32.30162 -31.10931 -28.46530 -27.95328 -27.18930 -25.25178 -23.26077 -22.34687 -21.84804 -20.63349 -20.16069 -18.87126 -18.31206 -17.45788 -16.90822 -16.45645 -16.18199 -15.79663 -15.51832 -15.30372 -15.05068 -14.81291 -14.62452 -14.37106 -13.97722 -13.82337 -13.72206 -13.54071 -13.35826 -13.15051 -12.86309 -12.75662 -12.55089 -12.48167 -12.09293 -11.94008 -11.84504 -11.75218 -11.59815 -11.43154 -11.30834 -11.25601 -11.19635 -11.02813 -10.70958 -9.65418 -9.60647 -8.24721 -6.28045 1.41780 1.43055 1.49553 1.55809 2.00108 2.41632 3.11907 3.42249 3.59599 3.74605 3.75847 3.90089 4.04456 4.12998 4.17949 4.23873 4.25023 4.43364 4.45031 4.48627 4.53798 4.64525 4.68463 4.72991 4.78760 4.82268 4.90200 4.96618 5.03058 5.11371 5.12934 5.15558 5.23595 5.25661 5.31613 5.37845 5.49963 5.52393 5.60964 5.64926 5.72421 6.03914 6.32247 6.34275 6.47742 6.80185 7.08768 7.36458 8.92187 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.026416 B = 0.003862 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1059.712359 B = 7249.051123 C = 7667.066345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.091 4.091 3 H 0.086 0.914 4 C -0.109 4.109 5 C -0.116 4.116 6 C -0.115 4.115 7 C -0.127 4.127 8 C 0.141 3.859 9 H 0.068 0.932 10 N -0.600 5.600 11 C 0.060 3.940 12 C 0.485 3.515 13 O -0.586 6.586 14 C 0.085 3.915 15 H 0.117 0.883 16 N -0.818 5.818 17 C -0.079 4.079 18 C 0.005 3.995 19 C -0.531 4.531 20 H 0.027 0.973 21 C 0.004 3.996 22 N -0.955 5.955 23 Si 0.953 3.047 24 H -0.273 1.273 25 H -0.286 1.286 26 H -0.241 1.241 27 H 0.037 0.963 28 H 0.042 0.958 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.053 0.947 36 H 0.044 0.956 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.074 0.926 40 H 0.091 0.909 41 H 0.347 0.653 42 H 0.345 0.655 43 H 0.036 0.964 44 H 0.067 0.933 45 H 0.025 0.975 46 H 0.026 0.974 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.689 -0.065 -26.236 26.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.110 4.110 3 H 0.104 0.896 4 C -0.147 4.147 5 C -0.153 4.153 6 C -0.153 4.153 7 C -0.165 4.165 8 C 0.038 3.962 9 H 0.086 0.914 10 N -0.331 5.331 11 C -0.082 4.082 12 C 0.272 3.728 13 O -0.467 6.467 14 C -0.031 4.031 15 H 0.134 0.866 16 N -0.347 5.347 17 C -0.117 4.117 18 C -0.033 4.033 19 C -0.569 4.569 20 H 0.046 0.954 21 C -0.193 4.193 22 N -0.596 5.596 23 Si 0.777 3.223 24 H -0.199 1.199 25 H -0.212 1.212 26 H -0.164 1.164 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.090 0.910 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.093 0.907 40 H 0.110 0.890 41 H 0.161 0.839 42 H 0.158 0.842 43 H 0.055 0.945 44 H 0.086 0.914 45 H 0.043 0.957 46 H 0.044 0.956 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.799 -0.034 -25.590 25.742 hybrid contribution -0.073 -0.646 0.156 0.669 sum -2.872 -0.680 -25.434 25.604 Atomic orbital electron populations 1.21730 0.95324 1.00943 1.01700 1.21416 0.95608 1.00395 0.93628 0.89558 1.21566 0.95982 1.00331 0.96868 1.21543 0.94984 1.01345 0.97442 1.21493 1.00961 0.98987 0.93848 1.21874 0.93996 1.02073 0.98538 1.21188 0.94154 0.96670 0.84170 0.91359 1.48032 1.49483 1.13399 1.22208 1.22167 1.02693 0.80028 1.03333 1.22394 0.77876 0.87069 0.85490 1.90615 1.59980 1.18408 1.77648 1.21664 0.92572 0.99033 0.89818 0.86569 1.59045 1.07263 1.22209 1.46170 1.21290 0.95843 0.99799 0.94784 1.19351 0.95472 0.95630 0.92823 1.21538 1.01388 1.31652 1.02303 0.95430 1.26000 1.00564 0.97143 0.95564 1.70077 1.35747 1.44578 1.09158 0.85614 0.79293 0.78040 0.79379 1.19874 1.21202 1.16369 0.94406 0.93861 0.91022 0.90116 0.92760 0.90922 0.90675 0.90704 0.92769 0.93729 0.90147 0.90423 0.90730 0.89036 0.83933 0.84200 0.94515 0.91427 0.95660 0.95582 0.92635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 9.04 71.98 0.65 -1.84 16 2 C -0.09 -1.48 2.11 -10.79 -0.02 -1.51 16 3 H 0.09 1.21 7.67 -2.39 -0.02 1.19 16 4 C -0.11 -1.46 5.20 30.59 0.16 -1.30 16 5 C -0.12 -1.37 5.92 30.59 0.18 -1.19 16 6 C -0.11 -1.77 5.92 30.59 0.18 -1.59 16 7 C -0.13 -2.44 5.18 30.59 0.16 -2.29 16 8 C 0.14 3.10 1.97 44.99 0.09 3.19 16 9 H 0.07 1.93 6.90 -2.39 -0.02 1.91 16 10 N -0.60 -14.57 1.99 -822.59 -1.64 -16.22 16 11 C 0.06 1.14 8.91 127.77 1.14 2.28 16 12 C 0.48 14.90 6.92 87.66 0.61 15.51 16 13 O -0.59 -21.62 15.58 -3.03 -0.05 -21.66 16 14 C 0.08 2.64 2.31 44.17 0.10 2.74 16 15 H 0.12 3.18 7.21 -2.39 -0.02 3.16 16 16 N -0.82 -25.45 8.44 -171.79 -1.45 -26.90 16 17 C -0.08 -3.06 4.45 30.59 0.14 -2.93 16 18 C 0.00 0.22 3.93 29.85 0.12 0.34 16 19 C -0.53 -30.78 9.66 25.60 0.25 -30.53 16 20 H 0.03 1.76 7.99 -2.91 -0.02 1.74 16 21 C 0.00 0.21 5.47 84.66 0.46 0.67 16 22 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 23 Si 0.95 44.83 27.47 68.60 1.88 46.71 16 24 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 25 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 26 H -0.24 -10.31 6.54 99.48 0.65 -9.66 16 27 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.04 0.86 7.60 -2.38 -0.02 0.84 16 29 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 0.83 8.14 -2.39 -0.02 0.82 16 32 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.33 6.66 -2.39 -0.02 1.31 16 38 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 1.68 4.83 -2.38 -0.01 1.67 16 40 H 0.09 1.41 6.43 -2.39 -0.02 1.40 16 41 H 0.35 9.19 9.06 -89.69 -0.81 8.38 16 42 H 0.34 11.35 8.58 -89.69 -0.77 10.58 16 43 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.07 2.52 6.43 -2.38 -0.02 2.50 16 45 H 0.03 1.11 7.20 -2.39 -0.02 1.09 16 46 H 0.03 1.23 7.18 -2.39 -0.02 1.21 16 47 H 0.26 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -70.96 356.80 2.56 -68.40 By element: Atomic # 1 Polarization: 29.05 SS G_CDS: -0.69 Total: 28.36 kcal Atomic # 6 Polarization: -22.65 SS G_CDS: 4.21 Total: -18.45 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -2.79 Total: -103.36 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -0.05 Total: -21.66 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 1.88 Total: 46.71 kcal Total: -70.96 2.56 -68.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424194652.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.971 kcal (2) G-P(sol) polarization free energy of solvation -70.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds