Wall clock time and date at job start Tue Mar 31 2020 06:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08998 * 109.46862 * 2 1 4 4 C 1.52997 * 109.47482 * 239.99435 * 2 1 3 5 5 C 1.53000 * 109.47060 * 180.02562 * 4 2 1 6 6 C 1.52996 * 109.47328 * 60.00126 * 5 4 2 7 7 C 1.53002 * 109.46891 * 299.99597 * 6 5 4 8 8 C 1.52997 * 109.46978 * 60.00410 * 7 6 5 9 9 H 1.09001 * 109.47375 * 59.99908 * 8 7 6 10 10 N 1.46504 * 109.47417 * 179.97438 * 8 7 6 11 11 C 1.46501 * 119.99804 * 59.99376 * 10 8 7 12 12 C 1.34773 * 119.99744 * 240.00047 * 10 8 7 13 13 O 1.21275 * 120.00293 * 359.97438 * 12 10 8 14 14 C 1.50703 * 119.99654 * 179.97438 * 12 10 8 15 15 H 1.09003 * 109.47369 * 319.99861 * 14 12 10 16 16 N 1.46901 * 109.47071 * 200.00271 * 14 12 10 17 17 C 1.52995 * 109.47306 * 79.99943 * 14 12 10 18 18 C 1.52999 * 109.47447 * 185.00053 * 17 14 12 19 19 C 1.50703 * 109.47297 * 180.02562 * 18 17 14 20 20 H 1.07999 * 120.00071 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99703 * 180.02562 * 19 18 17 22 22 N 1.31509 * 120.00162 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99422 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47433 * 359.97438 * 23 21 19 25 25 H 1.48508 * 109.47092 * 119.99901 * 23 21 19 26 26 H 1.48498 * 109.46938 * 239.99382 * 23 21 19 27 27 H 1.09001 * 109.47066 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47747 * 300.00400 * 1 2 3 29 29 H 1.09002 * 109.47103 * 60.00812 * 1 2 3 30 30 H 1.09002 * 109.47153 * 59.99783 * 4 2 1 31 31 H 1.09001 * 109.46832 * 299.99974 * 4 2 1 32 32 H 1.09004 * 109.46724 * 180.02562 * 5 4 2 33 33 H 1.09001 * 109.47194 * 299.99650 * 5 4 2 34 34 H 1.08992 * 109.47554 * 59.99639 * 6 5 4 35 35 H 1.09004 * 109.47108 * 179.97438 * 6 5 4 36 36 H 1.09002 * 109.47097 * 180.02562 * 7 6 5 37 37 H 1.09001 * 109.47142 * 300.00176 * 7 6 5 38 38 H 1.08999 * 109.46601 * 90.00735 * 11 10 8 39 39 H 1.09001 * 109.47033 * 210.00059 * 11 10 8 40 40 H 1.08999 * 109.47288 * 330.00456 * 11 10 8 41 41 H 1.00902 * 111.00291 * 176.04922 * 16 14 12 42 42 H 1.00900 * 110.99990 * 299.99784 * 16 14 12 43 43 H 1.09004 * 109.47083 * 305.00330 * 17 14 12 44 44 H 1.09007 * 109.47335 * 64.99866 * 17 14 12 45 45 H 1.09008 * 109.46829 * 299.99886 * 18 17 14 46 46 H 1.08994 * 109.47374 * 59.99568 * 18 17 14 47 47 H 0.97001 * 119.99857 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5700 -0.7218 -1.2487 6 6 4.0795 -1.4433 0.0006 7 6 3.5694 -0.7219 1.2497 8 6 2.0395 -0.7214 1.2494 9 1 1.6758 -1.7490 1.2493 10 7 1.5510 -0.0312 2.4458 11 6 1.9054 1.3711 2.6783 12 6 0.7758 -0.6864 3.3324 13 8 0.4821 -1.8472 3.1397 14 6 0.2738 0.0234 4.5633 15 1 1.0635 0.6594 4.9635 16 7 -0.1167 -0.9675 5.5750 17 6 -0.9375 0.8836 4.1977 18 6 -1.3705 1.6995 5.4174 19 6 -2.5640 2.5463 5.0575 20 1 -2.9726 2.5069 4.0585 21 6 -3.1337 3.3722 6.0032 22 7 -2.6359 3.4206 7.2195 23 14 -4.6126 4.4224 5.5567 24 1 -4.9761 4.1871 4.1363 25 1 -5.7589 4.0591 6.4282 26 1 -4.2783 5.8561 5.7508 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 1.6767 -0.2076 -2.1392 31 1 1.6767 -1.7490 -1.2490 32 1 3.9334 -1.2354 -2.1389 33 1 3.9337 0.3057 -1.2486 34 1 3.7158 -2.4708 0.0005 35 1 5.1695 -1.4441 0.0006 36 1 3.9328 -1.2356 2.1398 37 1 3.9331 0.3056 1.2498 38 1 1.1543 2.0160 2.2221 39 1 1.9457 1.5627 3.7506 40 1 2.8795 1.5780 2.2353 41 1 -0.3963 -0.5170 6.4335 42 1 -0.8482 -1.5696 5.2279 43 1 -0.6714 1.5590 3.3846 44 1 -1.7582 0.2398 3.8813 45 1 -1.6367 1.0240 6.2305 46 1 -0.5499 2.3433 5.7339 47 1 -3.0369 4.0014 7.8849 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424194653.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:03 Heat of formation + Delta-G solvation = -70.519663 kcal Electronic energy + Delta-G solvation = -23624.539522 eV Core-core repulsion = 20419.647445 eV Total energy + Delta-G solvation = -3204.892077 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.38767 -38.38594 -35.44857 -34.93317 -32.85516 -32.62252 -30.23080 -29.85673 -26.98893 -26.77314 -25.86518 -24.00453 -22.32244 -21.42942 -20.46999 -19.68979 -18.80046 -17.30737 -16.46514 -16.12982 -15.20564 -14.96804 -14.69430 -14.53235 -14.41085 -14.15740 -13.93388 -13.62278 -13.26562 -12.99988 -12.77231 -12.54457 -12.40964 -12.21704 -12.09748 -12.02176 -11.70456 -11.53553 -11.27400 -11.06621 -11.03356 -10.91100 -10.66685 -10.62140 -10.44995 -10.34638 -9.96343 -9.83671 -9.24462 -9.11969 -8.47222 -8.43797 -8.14429 -6.08782 -4.11660 2.97977 3.11742 3.25747 3.33897 3.37812 4.39124 4.43922 4.58138 4.68026 4.82972 4.98458 5.00411 5.15272 5.18722 5.27329 5.27636 5.28369 5.32676 5.37818 5.47199 5.56062 5.65257 5.69427 5.79136 5.80165 5.85645 5.87529 5.90316 5.96394 5.98761 6.05843 6.16310 6.25194 6.32371 6.37496 6.53869 6.71903 6.89012 7.42770 7.52471 7.61455 7.68719 7.88595 7.93466 8.31460 8.50618 8.94534 9.53299 11.02150 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023985 B = 0.003895 C = 0.003610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.103643 B = 7186.436686 C = 7753.609752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.071 0.929 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.128 4.128 8 C 0.146 3.854 9 H 0.098 0.902 10 N -0.612 5.612 11 C 0.073 3.927 12 C 0.528 3.472 13 O -0.540 6.540 14 C 0.074 3.926 15 H 0.097 0.903 16 N -0.831 5.831 17 C -0.136 4.136 18 C 0.025 3.975 19 C -0.522 4.522 20 H 0.055 0.945 21 C 0.058 3.942 22 N -0.893 5.893 23 Si 0.891 3.109 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.283 1.283 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.077 0.923 40 H 0.068 0.932 41 H 0.353 0.647 42 H 0.345 0.655 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.017 0.983 46 H 0.018 0.982 47 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.106 -5.817 -14.513 20.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.090 0.910 4 C -0.150 4.150 5 C -0.158 4.158 6 C -0.154 4.154 7 C -0.166 4.166 8 C 0.042 3.958 9 H 0.116 0.884 10 N -0.346 5.346 11 C -0.070 4.070 12 C 0.316 3.684 13 O -0.416 6.416 14 C -0.041 4.041 15 H 0.114 0.886 16 N -0.363 5.363 17 C -0.176 4.176 18 C -0.012 4.012 19 C -0.560 4.560 20 H 0.073 0.927 21 C -0.143 4.143 22 N -0.532 5.532 23 Si 0.719 3.281 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.168 0.832 42 H 0.158 0.842 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.035 0.965 46 H 0.036 0.964 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 13.670 -6.619 -14.470 20.977 hybrid contribution -1.762 1.336 -0.177 2.218 sum 11.908 -5.283 -14.647 19.602 Atomic orbital electron populations 1.21777 0.94625 1.02039 1.01825 1.21445 0.96316 0.99780 0.94190 0.91012 1.21575 0.95289 1.00903 0.97246 1.21560 0.95766 1.00737 0.97714 1.21489 1.00180 0.99594 0.94132 1.21888 0.95247 1.01155 0.98358 1.21057 0.93069 0.98007 0.83652 0.88353 1.47826 1.51447 1.12526 1.22751 1.21870 1.00691 0.81617 1.02790 1.20867 0.76857 0.86547 0.84100 1.90605 1.57492 1.17088 1.76431 1.21533 0.99128 0.92919 0.90554 0.88575 1.58764 1.48446 1.22491 1.06632 1.22364 0.95073 0.98284 1.01882 1.19097 0.96410 0.94232 0.91478 1.21213 1.13674 1.23806 0.97326 0.92708 1.25008 0.97289 0.97011 0.94998 1.69957 1.41056 1.38988 1.03190 0.86543 0.82756 0.80192 0.78575 1.19763 1.20953 1.20950 0.92745 0.92200 0.92897 0.91760 0.91800 0.92031 0.91984 0.91801 0.91837 0.91584 0.91619 0.92176 0.90416 0.91352 0.83169 0.84217 0.92465 0.92836 0.96464 0.96391 0.92952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.03 37.15 0.34 -1.43 16 2 C -0.10 -1.03 2.11 -90.62 -0.19 -1.22 16 3 H 0.07 0.73 7.67 -51.93 -0.40 0.33 16 4 C -0.11 -0.99 5.20 -26.73 -0.14 -1.12 16 5 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 6 C -0.12 -0.96 5.92 -26.73 -0.16 -1.12 16 7 C -0.13 -1.27 5.18 -26.73 -0.14 -1.41 16 8 C 0.15 1.76 1.97 -67.93 -0.13 1.62 16 9 H 0.10 1.43 6.90 -51.93 -0.36 1.07 16 10 N -0.61 -8.36 2.00 -173.93 -0.35 -8.71 16 11 C 0.07 0.85 8.62 59.85 0.52 1.36 16 12 C 0.53 9.03 6.93 -10.99 -0.08 8.95 16 13 O -0.54 -10.79 15.58 5.56 0.09 -10.70 16 14 C 0.07 1.28 2.47 -68.87 -0.17 1.11 16 15 H 0.10 1.60 6.31 -51.93 -0.33 1.27 16 16 N -0.83 -14.75 8.94 -5.65 -0.05 -14.80 16 17 C -0.14 -2.70 4.71 -26.73 -0.13 -2.82 16 18 C 0.02 0.60 4.74 -27.88 -0.13 0.47 16 19 C -0.52 -14.27 9.11 -34.44 -0.31 -14.59 16 20 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 21 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 22 N -0.89 -25.95 13.29 55.43 0.74 -25.21 16 23 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 24 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.85 7.60 -51.93 -0.39 0.45 16 29 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.60 6.66 -51.93 -0.35 0.25 16 38 H 0.06 0.71 7.65 -51.93 -0.40 0.31 16 39 H 0.08 0.92 5.94 -51.93 -0.31 0.61 16 40 H 0.07 0.63 6.43 -51.93 -0.33 0.29 16 41 H 0.35 6.24 7.55 -39.29 -0.30 5.94 16 42 H 0.34 6.21 8.58 -39.29 -0.34 5.88 16 43 H 0.06 1.09 6.94 -51.93 -0.36 0.73 16 44 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.02 0.44 6.87 -51.92 -0.36 0.08 16 46 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 358.76 15.07 5.41 5.41 Total: -1.00 -30.51 358.76 -8.58 -39.09 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -8.41 Total: 8.47 kcal Atomic # 6 Polarization: -8.77 SS G_CDS: -0.98 Total: -9.75 kcal Atomic # 7 Polarization: -49.06 SS G_CDS: 0.34 Total: -48.72 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.51 -8.58 -39.09 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424194653.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.428 kcal (2) G-P(sol) polarization free energy of solvation -30.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds