Wall clock time and date at job start Tue Mar 31 2020 06:08:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.47287 * 2 1 4 4 C 1.52999 * 109.47111 * 239.99761 * 2 1 3 5 5 C 1.53006 * 109.46882 * 180.02562 * 4 2 1 6 6 C 1.52993 * 109.47238 * 60.00482 * 5 4 2 7 7 C 1.53009 * 109.47042 * 299.99887 * 6 5 4 8 8 C 1.52998 * 109.47241 * 59.99986 * 7 6 5 9 9 H 1.08995 * 109.47301 * 180.02562 * 8 7 6 10 10 N 1.46500 * 109.47368 * 59.99902 * 8 7 6 11 11 C 1.46506 * 119.99759 * 351.18526 * 10 8 7 12 12 C 1.34768 * 120.00269 * 171.18223 * 10 8 7 13 13 O 1.21284 * 120.00036 * 353.48277 * 12 10 8 14 14 C 1.50700 * 120.00305 * 173.49021 * 12 10 8 15 15 H 1.09006 * 109.47058 * 319.99695 * 14 12 10 16 16 N 1.46897 * 109.47147 * 200.00095 * 14 12 10 17 17 C 1.52991 * 109.47363 * 79.99609 * 14 12 10 18 18 C 1.52997 * 109.47481 * 185.00286 * 17 14 12 19 19 C 1.50699 * 109.47780 * 180.02562 * 18 17 14 20 20 H 1.08012 * 119.99352 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00675 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99931 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00214 * 179.97438 * 21 19 18 24 24 H 1.48494 * 109.47183 * 60.00490 * 23 21 19 25 25 H 1.48500 * 109.47153 * 300.00108 * 23 21 19 26 26 H 1.48504 * 109.47131 * 180.02562 * 23 21 19 27 27 H 1.09001 * 109.47262 * 291.53942 * 1 2 3 28 28 H 1.08997 * 109.46816 * 51.53631 * 1 2 3 29 29 H 1.09001 * 109.47279 * 171.53121 * 1 2 3 30 30 H 1.08998 * 109.47734 * 300.00110 * 4 2 1 31 31 H 1.09004 * 109.47066 * 60.00384 * 4 2 1 32 32 H 1.09008 * 109.46737 * 180.02562 * 5 4 2 33 33 H 1.08996 * 109.47392 * 300.00163 * 5 4 2 34 34 H 1.09004 * 109.47484 * 59.99539 * 6 5 4 35 35 H 1.09000 * 109.47296 * 180.02562 * 6 5 4 36 36 H 1.09004 * 109.46697 * 300.00134 * 7 6 5 37 37 H 1.08994 * 109.46957 * 180.02562 * 7 6 5 38 38 H 1.09008 * 109.46563 * 269.77530 * 11 10 8 39 39 H 1.09002 * 109.47199 * 29.77248 * 11 10 8 40 40 H 1.08993 * 109.46826 * 149.77665 * 11 10 8 41 41 H 1.00905 * 110.99844 * 176.04587 * 16 14 12 42 42 H 1.00900 * 110.99764 * 299.99318 * 16 14 12 43 43 H 1.09006 * 109.47268 * 65.00543 * 17 14 12 44 44 H 1.08997 * 109.47254 * 305.00543 * 17 14 12 45 45 H 1.08997 * 109.47396 * 59.99654 * 18 17 14 46 46 H 1.09001 * 109.46830 * 299.99941 * 18 17 14 47 47 H 0.97008 * 119.99958 * 0.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4435 0.0003 7 6 3.5694 -0.7222 1.2497 8 6 2.0394 -0.7216 1.2493 9 1 1.6761 -0.2075 2.1391 10 7 1.5506 -2.1027 1.2490 11 6 2.4881 -3.2115 1.0545 12 6 0.2384 -2.3531 1.4276 13 8 -0.5193 -1.4479 1.7059 14 6 -0.2873 -3.7578 1.2816 15 1 0.2044 -4.2441 0.4390 16 7 -1.7365 -3.7162 1.0451 17 6 -0.0019 -4.5448 2.5621 18 6 -0.4225 -6.0031 2.3691 19 6 -0.1420 -6.7783 3.6306 20 1 0.2925 -6.2803 4.4849 21 6 -0.4409 -8.1227 3.6946 22 7 -0.9704 -8.7288 2.6545 23 14 -0.0925 -9.0835 5.2582 24 1 -0.8588 -8.4917 6.3840 25 1 1.3598 -9.0240 5.5625 26 1 -0.5009 -10.4990 5.0708 27 1 -0.3634 0.3773 0.9559 28 1 -0.3633 0.6392 -0.8047 29 1 -0.3634 -1.0165 -0.1513 30 1 1.6767 -1.7490 -1.2493 31 1 1.6767 -0.2074 -2.1392 32 1 3.9334 -1.2353 -2.1391 33 1 3.9338 0.3057 -1.2486 34 1 3.7158 -2.4710 0.0002 35 1 5.1695 -1.4434 0.0008 36 1 3.9332 0.3054 1.2498 37 1 3.9327 -1.2360 2.1396 38 1 2.5693 -3.4363 -0.0090 39 1 3.4675 -2.9315 1.4425 40 1 2.1250 -4.0915 1.5853 41 1 -2.1027 -4.6418 0.8798 42 1 -2.2154 -3.2697 1.8128 43 1 -0.5648 -4.1108 3.3885 44 1 1.0640 -4.5007 2.7858 45 1 0.1403 -6.4373 1.5427 46 1 -1.4885 -6.0472 2.1455 47 1 -1.1504 -8.2301 1.8422 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424194654.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:06 Heat of formation + Delta-G solvation = -26.490838 kcal Electronic energy + Delta-G solvation = -24209.278793 eV Core-core repulsion = 21006.295949 eV Total energy + Delta-G solvation = -3202.982844 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.02879 -38.29929 -35.76507 -34.50102 -33.14324 -32.72123 -30.48779 -29.73808 -27.50574 -26.43997 -25.54467 -23.73690 -22.25054 -21.48462 -20.80574 -20.04798 -18.60447 -17.40415 -16.66345 -16.37285 -15.74272 -14.89376 -14.76954 -14.39638 -14.22187 -14.12599 -13.76628 -13.62576 -13.42392 -13.17525 -12.99049 -12.38308 -12.32919 -12.22302 -12.01562 -11.94343 -11.66014 -11.49123 -11.37847 -11.17804 -10.85221 -10.63826 -10.36009 -10.24328 -10.23078 -10.12159 -10.03132 -9.96873 -9.13928 -8.71630 -8.42323 -8.37989 -8.17185 -6.43704 -4.14302 2.92148 3.09731 3.39668 3.41052 3.59955 4.47022 4.49177 4.56618 4.64445 4.85938 5.02526 5.03983 5.09359 5.17620 5.31368 5.32785 5.33880 5.35465 5.38322 5.48287 5.52688 5.58519 5.67890 5.70118 5.79601 5.85116 5.87895 5.99664 6.03228 6.08327 6.19404 6.20711 6.26240 6.34929 6.39594 6.70214 6.71746 6.78522 7.21785 7.32489 7.37544 7.61396 7.81398 8.10723 8.36939 8.47822 8.79776 9.57724 10.96520 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024836 B = 0.004150 C = 0.003857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1127.131829 B = 6744.609546 C = 7256.870500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.099 4.099 3 H 0.070 0.930 4 C -0.112 4.112 5 C -0.116 4.116 6 C -0.163 4.163 7 C -0.124 4.124 8 C 0.155 3.845 9 H 0.076 0.924 10 N -0.608 5.608 11 C 0.056 3.944 12 C 0.522 3.478 13 O -0.524 6.524 14 C 0.074 3.926 15 H 0.092 0.908 16 N -0.829 5.829 17 C -0.133 4.133 18 C 0.012 3.988 19 C -0.604 4.604 20 H 0.048 0.952 21 C 0.017 3.983 22 N -0.910 5.910 23 Si 1.068 2.932 24 H -0.288 1.288 25 H -0.288 1.288 26 H -0.282 1.282 27 H 0.071 0.929 28 H 0.030 0.970 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.102 0.898 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.069 0.931 38 H 0.060 0.940 39 H 0.085 0.915 40 H 0.082 0.918 41 H 0.350 0.650 42 H 0.346 0.654 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.009 0.991 46 H 0.008 0.992 47 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.811 15.594 -6.561 19.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.200 4.200 7 C -0.162 4.162 8 C 0.052 3.948 9 H 0.094 0.906 10 N -0.343 5.343 11 C -0.086 4.086 12 C 0.311 3.689 13 O -0.399 6.399 14 C -0.042 4.042 15 H 0.110 0.890 16 N -0.361 5.361 17 C -0.173 4.173 18 C -0.025 4.025 19 C -0.642 4.642 20 H 0.066 0.934 21 C -0.187 4.187 22 N -0.546 5.546 23 Si 0.896 3.104 24 H -0.214 1.214 25 H -0.214 1.214 26 H -0.207 1.207 27 H 0.090 0.910 28 H 0.049 0.951 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.078 0.922 36 H 0.093 0.907 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.165 0.835 42 H 0.159 0.841 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.027 0.973 46 H 0.026 0.974 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.467 15.026 -6.368 18.867 hybrid contribution 0.241 0.988 0.122 1.024 sum 9.708 16.014 -6.246 19.741 Atomic orbital electron populations 1.22288 0.93476 1.02763 1.01287 1.21560 0.97131 0.98638 0.94528 0.91169 1.21559 0.95055 1.01103 0.97278 1.21497 0.95866 1.00286 0.97683 1.22546 1.00375 1.02807 0.94224 1.21776 0.94178 1.01595 0.98665 1.20996 0.93336 0.82395 0.98065 0.90646 1.47740 1.07208 1.06256 1.73144 1.22487 0.94630 0.90346 1.01172 1.20595 0.81201 0.90940 0.76156 1.90672 1.56825 1.46169 1.46262 1.21507 0.91208 0.91712 0.99730 0.88960 1.58754 1.01898 1.26305 1.49148 1.22330 1.01487 0.98421 0.95046 1.19218 0.95704 0.89871 0.97719 1.21995 1.46111 0.96584 0.99552 0.93405 1.25841 0.94002 0.95612 1.03270 1.70806 1.40172 1.39657 1.03936 0.83556 0.76289 0.76214 0.74360 1.21448 1.21426 1.20695 0.90993 0.95145 0.91318 0.91784 0.92416 0.92257 0.92527 0.88069 0.92166 0.90736 0.91245 0.92182 0.89707 0.89929 0.83478 0.84111 0.92572 0.92024 0.97315 0.97372 0.92130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.99 7.33 37.16 0.27 -1.72 16 2 C -0.10 -1.15 2.54 -90.62 -0.23 -1.38 16 3 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.11 -1.20 5.04 -26.73 -0.13 -1.33 16 5 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 6 C -0.16 -1.39 5.13 -26.73 -0.14 -1.52 16 7 C -0.12 -1.13 4.94 -26.73 -0.13 -1.27 16 8 C 0.16 1.83 2.60 -67.93 -0.18 1.65 16 9 H 0.08 1.00 7.99 -51.93 -0.42 0.58 16 10 N -0.61 -8.03 2.23 -175.73 -0.39 -8.42 16 11 C 0.06 0.64 7.50 59.85 0.45 1.09 16 12 C 0.52 8.49 5.22 -10.99 -0.06 8.44 16 13 O -0.52 -9.59 11.67 5.55 0.06 -9.52 16 14 C 0.07 1.25 2.39 -68.87 -0.16 1.08 16 15 H 0.09 1.51 7.49 -51.93 -0.39 1.13 16 16 N -0.83 -14.17 8.94 -5.66 -0.05 -14.22 16 17 C -0.13 -2.61 4.47 -26.74 -0.12 -2.73 16 18 C 0.01 0.29 4.05 -27.89 -0.11 0.17 16 19 C -0.60 -16.64 9.11 -34.44 -0.31 -16.96 16 20 H 0.05 1.31 7.74 -52.48 -0.41 0.91 16 21 C 0.02 0.48 5.46 -17.82 -0.10 0.38 16 22 N -0.91 -27.09 13.65 55.43 0.76 -26.33 16 23 Si 1.07 24.80 29.90 -169.99 -5.08 19.71 16 24 H -0.29 -6.44 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H 0.07 1.13 6.67 -51.93 -0.35 0.78 16 28 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 1.13 5.37 -51.93 -0.28 0.85 16 30 H 0.06 0.77 7.04 -51.93 -0.37 0.41 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.49 8.14 -51.92 -0.42 0.07 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.90 3.08 -54.19 -0.17 0.73 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.62 7.30 -51.93 -0.38 0.24 16 38 H 0.06 0.62 6.44 -51.92 -0.33 0.29 16 39 H 0.08 0.80 4.79 -51.93 -0.25 0.56 16 40 H 0.08 1.09 4.62 -51.93 -0.24 0.85 16 41 H 0.35 5.99 7.55 -39.29 -0.30 5.69 16 42 H 0.35 6.02 8.58 -39.29 -0.34 5.68 16 43 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 44 H 0.06 1.17 5.91 -51.93 -0.31 0.86 16 45 H 0.01 0.21 8.01 -51.93 -0.42 -0.20 16 46 H 0.01 0.20 6.73 -51.93 -0.35 -0.15 16 47 H 0.27 7.90 7.22 -40.82 -0.29 7.60 16 LS Contribution 337.10 15.07 5.08 5.08 Total: -1.00 -30.30 337.10 -8.49 -38.79 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -7.75 Total: 10.20 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: -1.11 Total: -15.28 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: 0.31 Total: -48.98 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.06 Total: -9.52 kcal Atomic # 14 Polarization: 24.80 SS G_CDS: -5.08 Total: 19.71 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.30 -8.49 -38.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424194654.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.301 kcal (2) G-P(sol) polarization free energy of solvation -30.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds