Wall clock time and date at job start Tue Mar 31 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 110.43421 * 2 1 4 4 C 1.54882 * 110.49029 * 237.31105 * 2 1 3 5 5 C 1.54960 * 102.78108 * 203.40564 * 4 2 1 6 6 C 1.54260 * 104.16058 * 37.88922 * 5 4 2 7 7 H 1.09003 * 110.03415 * 95.75273 * 6 5 4 8 8 N 1.46903 * 110.03722 * 217.13763 * 6 5 4 9 9 C 1.46898 * 111.00240 * 173.95153 * 8 6 5 10 10 C 1.46896 * 110.99732 * 297.90987 * 8 6 5 11 11 C 1.52998 * 109.47026 * 169.99816 * 10 8 6 12 12 C 1.50706 * 109.47348 * 179.97438 * 11 10 8 13 13 O 1.21283 * 119.99503 * 359.97438 * 12 11 10 14 14 N 1.34773 * 120.00081 * 179.72561 * 12 11 10 15 15 C 1.46492 * 120.00231 * 359.97438 * 14 12 11 16 16 C 1.46506 * 119.99968 * 180.02562 * 14 12 11 17 17 C 1.50699 * 109.47352 * 89.99400 * 16 14 12 18 18 H 1.08000 * 119.99828 * 0.02562 * 17 16 14 19 19 C 1.37870 * 120.00146 * 179.97438 * 17 16 14 20 20 N 1.31516 * 119.99841 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00215 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47025 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.46976 * 120.00048 * 21 19 17 24 24 H 1.48503 * 109.46927 * 239.99950 * 21 19 17 25 25 C 1.53876 * 106.63843 * 336.44789 * 6 5 4 26 26 H 1.08997 * 109.47524 * 297.46583 * 1 2 3 27 27 H 1.09003 * 109.46738 * 57.46550 * 1 2 3 28 28 H 1.09000 * 109.47000 * 177.46228 * 1 2 3 29 29 H 1.09002 * 110.75961 * 321.69727 * 4 2 1 30 30 H 1.09008 * 110.75771 * 85.06494 * 4 2 1 31 31 H 1.09004 * 110.48188 * 279.23591 * 5 4 2 32 32 H 1.09005 * 110.53095 * 156.56917 * 5 4 2 33 33 H 1.09003 * 109.47121 * 183.95215 * 9 8 6 34 34 H 1.09001 * 109.47123 * 303.95237 * 9 8 6 35 35 H 1.08998 * 109.47423 * 63.95502 * 9 8 6 36 36 H 1.09000 * 109.47613 * 49.99741 * 10 8 6 37 37 H 1.09002 * 109.46818 * 289.99246 * 10 8 6 38 38 H 1.09001 * 109.47671 * 59.99839 * 11 10 8 39 39 H 1.08998 * 109.47454 * 299.99836 * 11 10 8 40 40 H 1.09001 * 109.47443 * 89.99785 * 15 14 12 41 41 H 1.08999 * 109.47479 * 210.00762 * 15 14 12 42 42 H 1.09006 * 109.47080 * 330.00171 * 15 14 12 43 43 H 1.08995 * 109.47161 * 210.00105 * 16 14 12 44 44 H 1.09002 * 109.46900 * 329.99415 * 16 14 12 45 45 H 0.97007 * 120.00044 * 180.02562 * 20 19 17 46 46 H 1.09001 * 110.03619 * 119.26126 * 25 6 5 47 47 H 1.09007 * 110.03032 * 240.69267 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0214 0.0000 4 6 2.0721 -0.7836 -1.2210 5 6 3.4912 -1.2000 -0.7585 6 6 3.3166 -1.5395 0.7361 7 1 3.1696 -2.6124 0.8606 8 7 4.4975 -1.1026 1.4928 9 6 4.2947 -1.2847 2.9363 10 6 5.7041 -1.8060 1.0378 11 6 6.9398 -1.1563 1.6637 12 6 8.1777 -1.8783 1.1974 13 8 8.0810 -2.8201 0.4394 14 7 9.3925 -1.4741 1.6187 15 6 9.5096 -0.3327 2.5294 16 6 10.5959 -2.1757 1.1649 17 6 11.1017 -1.5371 -0.1030 18 1 10.5792 -0.6928 -0.5280 19 6 12.2320 -2.0300 -0.7197 20 7 12.8685 -3.0577 -0.2018 21 14 12.8594 -1.2380 -2.2909 22 1 11.9714 -0.1078 -2.6643 23 1 14.2391 -0.7334 -2.0741 24 1 12.8660 -2.2436 -3.3836 25 6 2.0699 -0.7773 1.2183 26 1 -0.3634 0.4740 0.9118 27 1 -0.3633 0.5527 -0.8664 28 1 -0.3633 -1.0267 -0.0455 29 1 1.4581 -1.6619 -1.4201 30 1 2.1252 -0.1409 -2.0999 31 1 4.1908 -0.3734 -0.8827 32 1 3.8319 -2.0756 -1.3113 33 1 5.1547 -0.8890 3.4768 34 1 3.3948 -0.7537 3.2467 35 1 4.1843 -2.3464 3.1567 36 1 5.7724 -1.7451 -0.0484 37 1 5.6509 -2.8518 1.3405 38 1 6.8716 -1.2171 2.7499 39 1 6.9930 -0.1105 1.3611 40 1 9.4708 -0.6849 3.5602 41 1 10.4577 0.1759 2.3545 42 1 8.6873 0.3603 2.3511 43 1 11.3648 -2.1135 1.9349 44 1 10.3565 -3.2219 0.9743 45 1 13.6639 -3.4043 -0.6356 46 1 1.3175 -1.4802 1.5760 47 1 2.3411 -0.0831 2.0137 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429580095.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:58 Heat of formation + Delta-G solvation = -47.339003 kcal Electronic energy + Delta-G solvation = -22723.566820 eV Core-core repulsion = 19519.679932 eV Total energy + Delta-G solvation = -3203.886888 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.56976 -38.75227 -36.09042 -34.74169 -32.63245 -31.38664 -30.64036 -28.25897 -27.53434 -26.66987 -25.66094 -24.24843 -22.98644 -21.46627 -20.27497 -19.40444 -18.28696 -16.89091 -16.52495 -15.91470 -15.56288 -15.29628 -15.09482 -14.58763 -14.18400 -14.04111 -13.84151 -13.69304 -13.22831 -12.95133 -12.46289 -12.28800 -12.21872 -12.14242 -11.96254 -11.85962 -11.65063 -11.26591 -11.16601 -10.98266 -10.92413 -10.86009 -10.79969 -10.75461 -10.61892 -10.55801 -10.51060 -10.13478 -9.58166 -8.84469 -8.41981 -8.32426 -7.60040 -6.02365 -4.06891 3.31125 3.38250 3.41940 3.50361 3.71410 4.20170 4.36123 4.47722 4.49475 4.68884 5.06467 5.08778 5.17228 5.26826 5.31020 5.32756 5.37353 5.38090 5.43004 5.43643 5.47746 5.56067 5.61219 5.66698 5.71991 5.78577 5.80173 5.90108 5.92631 5.95665 5.97191 6.07683 6.10285 6.18594 6.26802 6.27222 6.29874 7.05319 7.09367 7.13825 7.47087 7.58192 7.94495 8.26173 8.46626 8.93295 9.14469 9.58296 11.05776 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.024224 B = 0.003253 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.592072 B = 8605.117566 C = 9295.702072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 H 0.075 0.925 4 C -0.119 4.119 5 C -0.120 4.120 6 C 0.081 3.919 7 H 0.041 0.959 8 N -0.537 5.537 9 C 0.016 3.984 10 C 0.070 3.930 11 C -0.134 4.134 12 C 0.504 3.496 13 O -0.546 6.546 14 N -0.604 5.604 15 C 0.084 3.916 16 C 0.244 3.756 17 C -0.524 4.524 18 H 0.058 0.942 19 C 0.059 3.941 20 N -0.896 5.896 21 Si 0.898 3.102 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C -0.116 4.116 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.023 0.977 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.031 0.969 44 H 0.043 0.957 45 H 0.262 0.738 46 H 0.061 0.939 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.855 7.003 5.560 23.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.094 0.906 4 C -0.157 4.157 5 C -0.157 4.157 6 C -0.027 4.027 7 H 0.059 0.941 8 N -0.262 5.262 9 C -0.132 4.132 10 C -0.057 4.057 11 C -0.175 4.175 12 C 0.290 3.710 13 O -0.424 6.424 14 N -0.336 5.336 15 C -0.060 4.060 16 C 0.125 3.875 17 C -0.563 4.563 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.535 5.535 21 Si 0.726 3.274 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 C -0.153 4.153 26 H 0.071 0.929 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.042 0.958 36 H 0.103 0.897 37 H 0.058 0.942 38 H 0.101 0.899 39 H 0.112 0.888 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.653 6.878 5.061 23.275 hybrid contribution 0.488 -0.419 -0.574 0.862 sum -21.164 6.459 4.487 22.578 Atomic orbital electron populations 1.21815 0.95323 1.01595 1.01432 1.21920 0.94950 0.99546 0.94862 0.90607 1.22554 0.96051 0.99592 0.97462 1.22470 0.97331 1.01925 0.94021 1.22267 0.89810 0.96761 0.93911 0.94110 1.62171 1.02780 1.57554 1.03679 1.22497 1.02363 0.99428 0.88902 1.21830 0.87615 0.95214 1.01074 1.21642 0.92943 1.01395 1.01493 1.20333 0.84596 0.84614 0.81434 1.90660 1.86579 1.29466 1.35713 1.48159 1.07714 1.31568 1.46169 1.21630 1.02730 0.89105 0.92554 1.19283 0.80084 0.93511 0.94646 1.21477 1.10172 1.15664 1.08946 0.92416 1.24948 0.96574 0.95011 0.97695 1.69949 1.19264 1.24251 1.40044 0.86439 0.78435 0.79308 0.83226 1.19773 1.20975 1.20883 1.22365 0.95726 0.99001 0.98241 0.92861 0.92799 0.92794 0.91676 0.91556 0.90173 0.91662 0.91140 0.91257 0.95804 0.89722 0.94172 0.89894 0.88786 0.93896 0.90861 0.92298 0.95081 0.93914 0.92805 0.92012 0.90609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.01 9.12 37.16 0.34 -0.67 16 2 C -0.09 -0.79 3.46 -88.97 -0.31 -1.10 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 4 C -0.12 -1.06 6.33 -24.70 -0.16 -1.22 16 5 C -0.12 -1.31 5.10 -25.04 -0.13 -1.44 16 6 C 0.08 0.88 2.67 -66.60 -0.18 0.71 16 7 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 8 N -0.54 -6.47 4.55 -233.54 -1.06 -7.53 16 9 C 0.02 0.17 9.01 60.06 0.54 0.71 16 10 C 0.07 1.04 4.11 -3.83 -0.02 1.03 16 11 C -0.13 -2.04 4.18 -27.88 -0.12 -2.16 16 12 C 0.50 10.67 7.67 -10.98 -0.08 10.58 16 13 O -0.55 -13.96 15.56 5.56 0.09 -13.88 16 14 N -0.60 -13.11 2.86 -182.95 -0.52 -13.63 16 15 C 0.08 1.35 10.25 59.84 0.61 1.97 16 16 C 0.24 6.53 5.16 -5.19 -0.03 6.51 16 17 C -0.52 -15.13 9.39 -34.44 -0.32 -15.46 16 18 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 20 N -0.90 -27.01 13.29 55.43 0.74 -26.28 16 21 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 25 C -0.12 -1.03 5.47 -25.61 -0.14 -1.17 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.05 0.37 8.12 -51.93 -0.42 -0.06 16 29 H 0.06 0.55 8.04 -51.93 -0.42 0.13 16 30 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.08 0.97 7.92 -51.93 -0.41 0.56 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.69 6.47 -51.93 -0.34 0.35 16 34 H 0.07 0.60 6.01 -51.93 -0.31 0.29 16 35 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 1.38 6.75 -51.93 -0.35 1.03 16 37 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 38 H 0.08 1.09 6.52 -51.93 -0.34 0.75 16 39 H 0.09 1.34 7.39 -51.93 -0.38 0.96 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 42 H 0.06 0.78 6.43 -51.93 -0.33 0.45 16 43 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 44 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 45 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 46 H 0.06 0.51 7.84 -51.93 -0.41 0.10 16 47 H 0.08 0.68 6.15 -51.92 -0.32 0.36 16 LS Contribution 365.02 15.07 5.50 5.50 Total: -1.00 -32.78 365.02 -8.96 -41.75 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -8.60 Total: -2.98 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -0.08 Total: -0.08 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.85 Total: -47.44 kcal Atomic # 8 Polarization: -13.96 SS G_CDS: 0.09 Total: -13.88 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.78 -8.96 -41.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429580095.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.593 kcal (2) G-P(sol) polarization free energy of solvation -32.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds