Wall clock time and date at job start Tue Mar 31 2020 06:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 110.01898 * 2 1 4 4 C 1.53876 * 110.07330 * 121.42237 * 2 1 3 5 5 C 1.54264 * 106.59768 * 119.30445 * 4 2 1 6 6 C 1.54892 * 104.19812 * 23.61236 * 5 4 2 7 7 H 1.08993 * 110.91705 * 80.44291 * 6 5 4 8 8 N 1.46901 * 110.75561 * 203.74616 * 6 5 4 9 9 C 1.46901 * 110.99748 * 169.37200 * 8 6 5 10 10 C 1.46898 * 110.99618 * 293.32241 * 8 6 5 11 11 C 1.53006 * 109.47006 * 170.00477 * 10 8 6 12 12 C 1.50698 * 109.47184 * 180.02562 * 11 10 8 13 13 O 1.21282 * 120.00025 * 359.97438 * 12 11 10 14 14 N 1.34776 * 120.00035 * 180.02562 * 12 11 10 15 15 C 1.46497 * 119.99801 * 359.97438 * 14 12 11 16 16 C 1.46504 * 119.99735 * 179.97438 * 14 12 11 17 17 C 1.50697 * 109.47527 * 89.99956 * 16 14 12 18 18 H 1.08009 * 119.99486 * 359.97438 * 17 16 14 19 19 C 1.37868 * 120.00223 * 179.97438 * 17 16 14 20 20 N 1.31519 * 120.00106 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00029 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47346 * 59.99815 * 21 19 17 23 23 H 1.48503 * 109.47098 * 179.97438 * 21 19 17 24 24 H 1.48507 * 109.46814 * 299.99771 * 21 19 17 25 25 C 1.54266 * 110.03029 * 238.61400 * 2 1 3 26 26 H 1.08995 * 109.47388 * 181.39271 * 1 2 3 27 27 H 1.09005 * 109.46914 * 301.39042 * 1 2 3 28 28 H 1.08999 * 109.47067 * 61.38517 * 1 2 3 29 29 H 1.08993 * 110.03204 * 238.58933 * 4 2 1 30 30 H 1.08997 * 110.03155 * 0.02562 * 4 2 1 31 31 H 1.09002 * 110.48612 * 264.93174 * 5 4 2 32 32 H 1.09001 * 110.48865 * 142.29109 * 5 4 2 33 33 H 1.09000 * 109.46654 * 183.94823 * 9 8 6 34 34 H 1.08993 * 109.47381 * 303.95021 * 9 8 6 35 35 H 1.08998 * 109.47023 * 63.95505 * 9 8 6 36 36 H 1.09001 * 109.47392 * 50.00775 * 10 8 6 37 37 H 1.09001 * 109.47520 * 290.00498 * 10 8 6 38 38 H 1.09001 * 109.47002 * 299.99782 * 11 10 8 39 39 H 1.08993 * 109.46955 * 60.00219 * 11 10 8 40 40 H 1.08999 * 109.46908 * 90.00559 * 15 14 12 41 41 H 1.09000 * 109.47065 * 210.00008 * 15 14 12 42 42 H 1.08990 * 109.47304 * 330.00300 * 15 14 12 43 43 H 1.09004 * 109.46561 * 209.99850 * 16 14 12 44 44 H 1.08998 * 109.47073 * 329.99510 * 16 14 12 45 45 H 0.97000 * 119.99819 * 180.02562 * 20 19 17 46 46 H 1.08998 * 110.49144 * 98.37898 * 25 2 1 47 47 H 1.09004 * 110.48671 * 335.73153 * 25 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0581 -0.7535 1.2333 5 6 2.8890 -1.9399 0.7025 6 6 3.3144 -1.4994 -0.7202 7 1 4.1720 -0.8280 -0.6796 8 7 3.6096 -2.6677 -1.5604 9 6 3.7670 -2.2776 -2.9679 10 6 4.8002 -3.3780 -1.0747 11 6 4.9328 -4.7133 -1.8099 12 6 6.1538 -5.4422 -1.3112 13 8 6.8498 -4.9428 -0.4526 14 7 6.4730 -6.6487 -1.8200 15 6 5.6327 -7.2518 -2.8574 16 6 7.6604 -7.3571 -1.3355 17 6 7.2825 -8.2305 -0.1670 18 1 6.2600 -8.2550 0.1804 19 6 8.2417 -8.9980 0.4587 20 7 9.4866 -8.9685 0.0354 21 14 7.7734 -10.0800 1.9076 22 1 6.7489 -11.0657 1.4786 23 1 8.9767 -10.7991 2.3978 24 1 7.2221 -9.2358 2.9980 25 6 2.0584 -0.7548 -1.2373 26 1 -0.3634 -1.0273 0.0250 27 1 -0.3633 0.5353 0.8773 28 1 -0.3633 0.4922 -0.9021 29 1 2.6875 -0.0951 1.8319 30 1 1.2244 -1.1199 1.8323 31 1 2.2792 -2.8422 0.6561 32 1 3.7656 -2.1026 1.3295 33 1 3.9152 -3.1689 -3.5775 34 1 2.8716 -1.7536 -3.3021 35 1 4.6312 -1.6209 -3.0685 36 1 4.7030 -3.5606 -0.0045 37 1 5.6864 -2.7712 -1.2607 38 1 4.0466 -5.3200 -1.6238 39 1 5.0300 -4.5307 -2.8800 40 1 5.9922 -6.9454 -3.8397 41 1 5.6784 -8.3378 -2.7763 42 1 4.6023 -6.9209 -2.7282 43 1 8.0657 -7.9763 -2.1358 44 1 8.4118 -6.6333 -1.0201 45 1 10.1614 -9.5088 0.4754 46 1 2.3288 -0.0527 -2.0259 47 1 1.3145 -1.4658 -1.5969 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429580098.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:03 Heat of formation + Delta-G solvation = -50.512445 kcal Electronic energy + Delta-G solvation = -22693.147146 eV Core-core repulsion = 19489.122647 eV Total energy + Delta-G solvation = -3204.024499 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.51566 -38.75476 -36.17917 -34.74100 -32.62961 -31.37439 -30.53729 -28.28978 -27.58329 -26.63044 -25.66461 -24.33952 -23.01200 -21.46266 -19.99086 -19.61900 -18.28495 -16.57777 -16.51939 -16.18771 -15.75022 -15.37960 -14.88315 -14.50186 -14.31460 -14.13041 -13.66696 -13.47207 -13.23252 -12.99172 -12.62947 -12.42374 -12.18954 -12.13493 -11.99871 -11.83588 -11.63907 -11.36191 -11.16188 -10.98838 -10.94683 -10.86696 -10.83681 -10.77125 -10.55616 -10.49205 -10.48075 -10.13204 -9.61423 -8.84336 -8.40988 -8.34481 -7.60022 -6.01848 -4.06600 3.33688 3.37775 3.40084 3.50483 3.69546 4.18826 4.34845 4.47762 4.50777 4.68541 5.06126 5.07619 5.17384 5.23093 5.27643 5.31322 5.35472 5.38205 5.42847 5.44022 5.45826 5.51219 5.64610 5.67165 5.75535 5.79142 5.80300 5.90798 5.91657 5.94357 5.97959 6.07090 6.13672 6.17664 6.25875 6.26894 6.29133 7.04788 7.08840 7.12567 7.47230 7.58137 7.94726 8.26479 8.46796 8.93052 9.14532 9.58470 11.06230 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.023937 B = 0.003234 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.464218 B = 8656.741235 C = 9340.232485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.096 4.096 3 H 0.068 0.932 4 C -0.120 4.120 5 C -0.117 4.117 6 C 0.078 3.922 7 H 0.047 0.953 8 N -0.537 5.537 9 C 0.019 3.981 10 C 0.071 3.929 11 C -0.134 4.134 12 C 0.504 3.496 13 O -0.546 6.546 14 N -0.604 5.604 15 C 0.084 3.916 16 C 0.245 3.755 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.060 3.940 20 N -0.896 5.896 21 Si 0.898 3.102 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.111 4.111 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.061 0.939 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.070 0.930 34 H 0.067 0.933 35 H 0.023 0.977 36 H 0.084 0.916 37 H 0.040 0.960 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.031 0.969 44 H 0.043 0.957 45 H 0.264 0.736 46 H 0.060 0.940 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.788 15.660 -5.482 23.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.115 4.115 3 H 0.086 0.914 4 C -0.158 4.158 5 C -0.155 4.155 6 C -0.031 4.031 7 H 0.065 0.935 8 N -0.260 5.260 9 C -0.129 4.129 10 C -0.057 4.057 11 C -0.175 4.175 12 C 0.290 3.710 13 O -0.424 6.424 14 N -0.336 5.336 15 C -0.060 4.060 16 C 0.125 3.875 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.142 4.142 20 N -0.535 5.535 21 Si 0.726 3.274 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.149 4.149 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.096 0.904 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.042 0.958 36 H 0.102 0.898 37 H 0.058 0.942 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.610 15.499 -4.973 23.256 hybrid contribution 0.530 -0.225 0.624 0.849 sum -16.080 15.274 -4.349 22.600 Atomic orbital electron populations 1.21870 0.94990 1.01888 1.01299 1.21699 0.95719 0.99143 0.94985 0.91363 1.22195 0.99458 0.96998 0.97121 1.22393 0.99830 0.98521 0.94714 1.22620 0.96554 0.90555 0.93324 0.93526 1.62081 1.37744 1.23965 1.02255 1.22445 1.00275 1.00500 0.89678 1.21830 0.90138 0.93395 1.00301 1.21639 0.97997 0.96846 1.00992 1.20330 0.86382 0.81754 0.82506 1.90660 1.52952 1.67095 1.31716 1.48161 1.28647 1.18254 1.38548 1.21629 0.94105 0.99907 0.90378 1.19272 0.82053 0.91715 0.94411 1.21406 0.95351 1.24648 1.15044 0.92520 1.24941 0.94797 0.97049 0.97366 1.69928 1.01247 1.40839 1.41506 0.86555 0.77752 0.80327 0.82762 1.20241 1.21188 1.20158 1.22503 0.97128 0.98386 0.96867 0.92419 0.92893 0.92919 0.92029 0.91553 0.90420 0.91620 0.91170 0.91434 0.95813 0.89788 0.94156 0.88780 0.89872 0.93893 0.90867 0.92293 0.95089 0.93919 0.92687 0.92172 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.84 37.16 0.33 -0.69 16 2 C -0.10 -0.78 3.50 -89.50 -0.31 -1.09 16 3 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 4 C -0.12 -1.06 6.46 -25.61 -0.17 -1.23 16 5 C -0.12 -1.26 5.49 -25.07 -0.14 -1.40 16 6 C 0.08 0.85 2.59 -65.71 -0.17 0.68 16 7 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 8 N -0.54 -6.45 4.66 -232.49 -1.08 -7.54 16 9 C 0.02 0.20 9.08 60.07 0.55 0.74 16 10 C 0.07 1.05 4.15 -3.82 -0.02 1.04 16 11 C -0.13 -2.04 4.18 -27.88 -0.12 -2.16 16 12 C 0.50 10.67 7.67 -10.99 -0.08 10.58 16 13 O -0.55 -13.98 15.56 5.56 0.09 -13.89 16 14 N -0.60 -13.11 2.86 -182.96 -0.52 -13.63 16 15 C 0.08 1.35 10.24 59.85 0.61 1.97 16 16 C 0.24 6.56 5.16 -5.19 -0.03 6.53 16 17 C -0.53 -15.20 9.38 -34.44 -0.32 -15.52 16 18 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.90 -27.03 13.29 55.43 0.74 -26.29 16 21 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 C -0.11 -0.99 4.50 -25.07 -0.11 -1.10 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.07 0.56 7.67 -51.93 -0.40 0.16 16 31 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.77 7.75 -51.93 -0.40 0.37 16 33 H 0.07 0.69 6.47 -51.93 -0.34 0.35 16 34 H 0.07 0.59 6.73 -51.93 -0.35 0.24 16 35 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 36 H 0.08 1.37 6.81 -51.93 -0.35 1.01 16 37 H 0.04 0.65 8.08 -51.93 -0.42 0.23 16 38 H 0.09 1.34 7.40 -51.93 -0.38 0.95 16 39 H 0.08 1.09 6.52 -51.93 -0.34 0.75 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 42 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 43 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 44 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 46 H 0.06 0.49 7.89 -51.93 -0.41 0.08 16 47 H 0.08 0.73 7.85 -51.93 -0.41 0.32 16 LS Contribution 366.50 15.07 5.52 5.52 Total: -1.00 -32.74 366.50 -9.06 -41.80 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -8.71 Total: -3.10 kcal Atomic # 6 Polarization: 0.08 SS G_CDS: -0.08 Total: 0.00 kcal Atomic # 7 Polarization: -46.60 SS G_CDS: -0.87 Total: -47.46 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: 0.09 Total: -13.89 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.74 -9.06 -41.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429580098.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.713 kcal (2) G-P(sol) polarization free energy of solvation -32.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds