Wall clock time and date at job start Tue Mar 31 2020 06:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08998 * 110.44061 * 2 1 4 4 C 1.54891 * 110.48754 * 122.54216 * 2 1 3 5 5 C 1.54885 * 102.75098 * 156.75076 * 4 2 1 6 6 C 1.54264 * 104.31313 * 321.98986 * 5 4 2 7 7 H 1.08997 * 110.03112 * 264.38940 * 6 5 4 8 8 N 1.46908 * 110.02895 * 142.96125 * 6 5 4 9 9 C 1.46890 * 111.00127 * 55.27057 * 8 6 5 10 10 C 1.46900 * 110.99590 * 179.22365 * 8 6 5 11 11 C 1.53002 * 109.47224 * 169.99599 * 10 8 6 12 12 C 1.50693 * 109.47129 * 179.97438 * 11 10 8 13 13 O 1.21276 * 120.00427 * 0.02562 * 12 11 10 14 14 N 1.34778 * 119.99674 * 180.02562 * 12 11 10 15 15 C 1.46502 * 120.00498 * 0.02562 * 14 12 11 16 16 C 1.46502 * 119.99919 * 179.97438 * 14 12 11 17 17 C 1.50706 * 109.46951 * 90.00442 * 16 14 12 18 18 H 1.07997 * 119.99673 * 359.97438 * 17 16 14 19 19 C 1.37872 * 119.99951 * 180.02562 * 17 16 14 20 20 N 1.31515 * 120.00218 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00094 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47045 * 89.99843 * 21 19 17 23 23 H 1.48502 * 109.47543 * 210.00000 * 21 19 17 24 24 H 1.48506 * 109.47130 * 329.99981 * 21 19 17 25 25 C 1.54212 * 106.42947 * 23.64317 * 6 5 4 26 26 H 1.08995 * 109.47337 * 298.91771 * 1 2 3 27 27 H 1.09004 * 109.46929 * 58.91645 * 1 2 3 28 28 H 1.08999 * 109.47511 * 178.91375 * 1 2 3 29 29 H 1.09002 * 110.75813 * 38.43144 * 4 2 1 30 30 H 1.09003 * 110.91416 * 275.14162 * 4 2 1 31 31 H 1.09006 * 110.48238 * 80.73596 * 5 4 2 32 32 H 1.09004 * 110.48859 * 203.24579 * 5 4 2 33 33 H 1.09002 * 109.47443 * 65.01895 * 9 8 6 34 34 H 1.09000 * 109.47154 * 185.01219 * 9 8 6 35 35 H 1.09000 * 109.47346 * 305.01606 * 9 8 6 36 36 H 1.08999 * 109.47599 * 290.00017 * 10 8 6 37 37 H 1.09003 * 109.47442 * 50.00305 * 10 8 6 38 38 H 1.08999 * 109.47174 * 300.00678 * 11 10 8 39 39 H 1.09003 * 109.46335 * 60.00027 * 11 10 8 40 40 H 1.09004 * 109.47239 * 89.99013 * 15 14 12 41 41 H 1.08993 * 109.47641 * 210.00213 * 15 14 12 42 42 H 1.09007 * 109.46497 * 330.00046 * 15 14 12 43 43 H 1.09005 * 109.47186 * 210.00019 * 16 14 12 44 44 H 1.08995 * 109.47098 * 330.00107 * 16 14 12 45 45 H 0.97005 * 120.00222 * 180.02562 * 20 19 17 46 46 H 1.09004 * 110.00672 * 240.69022 * 25 6 5 47 47 H 1.09005 * 110.06710 * 119.30281 * 25 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0721 -0.7805 1.2231 5 6 3.4919 -1.1941 0.7628 6 6 3.3229 -1.5400 -0.7310 7 1 3.1776 -2.6135 -0.8515 8 7 4.5055 -1.1038 -1.4855 9 6 5.7328 -1.6792 -0.9193 10 6 4.3748 -1.4398 -2.9095 11 6 5.4941 -0.7583 -3.6992 12 6 5.3604 -1.1035 -5.1600 13 8 4.4584 -1.8233 -5.5329 14 7 6.2432 -0.6122 -6.0520 15 6 7.3332 0.2569 -5.6016 16 6 6.1136 -0.9482 -7.4721 17 6 5.2405 0.0745 -8.1526 18 1 4.8236 0.8926 -7.5840 19 6 4.9732 -0.0349 -9.5007 20 7 5.4805 -1.0314 -10.1930 21 14 3.8904 1.2323 -10.3440 22 1 4.7338 2.3429 -10.8545 23 1 3.1726 0.5948 -11.4770 24 1 2.9040 1.7667 -9.3710 25 6 2.0727 -0.7785 -1.2163 26 1 -0.3634 0.4969 0.8995 27 1 -0.3633 0.5306 -0.8801 28 1 -0.3634 -1.0274 -0.0195 29 1 1.4594 -1.6596 1.4230 30 1 2.1228 -0.1388 2.1028 31 1 4.1893 -0.3655 0.8860 32 1 3.8347 -2.0661 1.3199 33 1 5.7148 -2.7625 -1.0385 34 1 6.5991 -1.2709 -1.4397 35 1 5.7952 -1.4312 0.1402 36 1 4.4466 -2.5201 -3.0362 37 1 3.4086 -1.0943 -3.2772 38 1 5.4224 0.3220 -3.5726 39 1 6.4604 -1.1038 -3.3315 40 1 8.2025 -0.3510 -5.3503 41 1 7.5949 0.9539 -6.3976 42 1 7.0131 0.8144 -4.7212 43 1 7.0998 -0.9506 -7.9364 44 1 5.6625 -1.9354 -7.5721 45 1 5.2927 -1.1082 -11.1416 46 1 1.3220 -1.4834 -1.5737 47 1 2.3429 -0.0853 -2.0130 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429580100.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:23:05 Heat of formation + Delta-G solvation = -48.388086 kcal Electronic energy + Delta-G solvation = -22776.040520 eV Core-core repulsion = 19572.108140 eV Total energy + Delta-G solvation = -3203.932380 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 282.205 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.55420 -38.73952 -36.08077 -34.74234 -32.63711 -31.61994 -29.93675 -28.94399 -27.73939 -25.96332 -25.35061 -24.84280 -22.99522 -21.34589 -20.34632 -19.34946 -18.29354 -16.73505 -16.52066 -16.15701 -15.56207 -15.17345 -15.07295 -14.62738 -14.15186 -14.07315 -13.78742 -13.68106 -13.14637 -12.98263 -12.50183 -12.21287 -12.16736 -12.12818 -11.96576 -11.85888 -11.67858 -11.27977 -11.14748 -11.04972 -10.93402 -10.86196 -10.79336 -10.73740 -10.61677 -10.53203 -10.48417 -10.13250 -9.59904 -8.84447 -8.41619 -8.32597 -7.60025 -6.02177 -4.06849 3.31537 3.37885 3.41741 3.50560 3.71408 4.19969 4.36787 4.47811 4.50109 4.71760 5.06499 5.10658 5.19601 5.27415 5.30472 5.32177 5.36702 5.38245 5.43033 5.45521 5.48161 5.63240 5.64178 5.66544 5.72119 5.80941 5.82120 5.87446 5.91110 5.96841 5.99407 6.04620 6.16922 6.20615 6.24345 6.26772 6.29850 7.05406 7.09305 7.14306 7.47199 7.58151 7.94565 8.26256 8.46676 8.93109 9.14476 9.58298 11.05917 Molecular weight = 282.20amu Principal moments of inertia in cm(-1) A = 0.020291 B = 0.003490 C = 0.003124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.614786 B = 8020.800633 C = 8962.127638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.093 4.093 3 H 0.075 0.925 4 C -0.119 4.119 5 C -0.117 4.117 6 C 0.081 3.919 7 H 0.041 0.959 8 N -0.537 5.537 9 C 0.018 3.982 10 C 0.069 3.931 11 C -0.134 4.134 12 C 0.504 3.496 13 O -0.546 6.546 14 N -0.604 5.604 15 C 0.084 3.916 16 C 0.245 3.755 17 C -0.525 4.525 18 H 0.057 0.943 19 C 0.060 3.940 20 N -0.896 5.896 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.117 4.117 26 H 0.052 0.948 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.077 0.923 32 H 0.060 0.940 33 H 0.023 0.977 34 H 0.070 0.930 35 H 0.067 0.933 36 H 0.040 0.960 37 H 0.085 0.915 38 H 0.094 0.906 39 H 0.083 0.917 40 H 0.043 0.957 41 H 0.073 0.927 42 H 0.058 0.942 43 H 0.031 0.969 44 H 0.043 0.957 45 H 0.263 0.737 46 H 0.064 0.936 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.581 1.419 22.948 23.046 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 H 0.093 0.907 4 C -0.157 4.157 5 C -0.155 4.155 6 C -0.027 4.027 7 H 0.059 0.941 8 N -0.262 5.262 9 C -0.130 4.130 10 C -0.059 4.059 11 C -0.174 4.174 12 C 0.290 3.710 13 O -0.424 6.424 14 N -0.336 5.336 15 C -0.060 4.060 16 C 0.125 3.875 17 C -0.564 4.564 18 H 0.075 0.925 19 C -0.142 4.142 20 N -0.535 5.535 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.211 1.211 24 H -0.199 1.199 25 C -0.155 4.155 26 H 0.071 0.929 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.096 0.904 32 H 0.079 0.921 33 H 0.042 0.958 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.061 0.939 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.004 1.459 22.570 22.706 hybrid contribution -0.433 -0.148 -0.729 0.860 sum -2.437 1.311 21.841 22.016 Atomic orbital electron populations 1.21814 0.95223 1.01685 1.01528 1.21909 0.95120 0.99481 0.94654 0.90651 1.22534 0.95899 0.99717 0.97510 1.22456 0.97554 1.01263 0.94256 1.22323 0.90330 0.96868 0.93221 0.94054 1.62173 1.02075 1.59285 1.02635 1.22450 0.93023 0.97120 1.00382 1.21855 0.99672 0.98361 0.85976 1.21635 1.00024 1.02827 0.92962 1.20330 0.82276 0.80940 0.87439 1.90659 1.32944 1.38052 1.80752 1.48160 1.27547 1.47775 1.10119 1.21632 0.89766 0.94323 1.00297 1.19275 0.97161 0.97518 0.73514 1.21449 1.30614 1.10607 0.93732 0.92458 1.24943 0.96072 0.95878 0.97290 1.69937 1.44922 1.30454 1.08189 0.86494 0.80623 0.81198 0.79099 1.20639 1.21087 1.19871 1.22389 0.95652 0.99227 0.98196 0.92890 0.92604 0.92755 0.91672 0.91693 0.90409 0.92148 0.95814 0.91177 0.91386 0.94155 0.89690 0.88790 0.89884 0.93896 0.90868 0.92297 0.95097 0.93914 0.92746 0.91753 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.13 37.16 0.34 -0.86 16 2 C -0.09 -0.85 3.45 -88.96 -0.31 -1.16 16 3 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.12 -0.96 6.33 -24.74 -0.16 -1.12 16 5 C -0.12 -1.04 5.07 -25.08 -0.13 -1.17 16 6 C 0.08 0.89 2.68 -66.41 -0.18 0.71 16 7 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 8 N -0.54 -6.47 4.53 -233.33 -1.06 -7.52 16 9 C 0.02 0.19 9.03 60.06 0.54 0.73 16 10 C 0.07 1.02 4.03 -3.82 -0.02 1.01 16 11 C -0.13 -2.04 4.17 -27.89 -0.12 -2.16 16 12 C 0.50 10.67 7.67 -10.99 -0.08 10.58 16 13 O -0.55 -13.97 15.56 5.56 0.09 -13.88 16 14 N -0.60 -13.10 2.86 -182.95 -0.52 -13.62 16 15 C 0.08 1.35 10.24 59.85 0.61 1.97 16 16 C 0.24 6.55 5.16 -5.19 -0.03 6.52 16 17 C -0.53 -15.19 9.39 -34.44 -0.32 -15.51 16 18 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 19 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 20 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 21 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 25 C -0.12 -1.28 5.41 -25.43 -0.14 -1.42 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.44 8.11 -51.93 -0.42 0.02 16 29 H 0.06 0.51 8.06 -51.93 -0.42 0.09 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.71 7.45 -51.93 -0.39 0.32 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 34 H 0.07 0.69 6.52 -51.93 -0.34 0.35 16 35 H 0.07 0.59 6.46 -51.93 -0.34 0.26 16 36 H 0.04 0.65 8.07 -51.93 -0.42 0.23 16 37 H 0.08 1.38 6.32 -51.93 -0.33 1.05 16 38 H 0.09 1.34 7.40 -51.93 -0.38 0.95 16 39 H 0.08 1.09 6.54 -51.93 -0.34 0.75 16 40 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 42 H 0.06 0.78 6.44 -51.92 -0.33 0.45 16 43 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 44 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 45 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 46 H 0.06 0.71 7.82 -51.93 -0.41 0.30 16 47 H 0.08 0.99 6.75 -51.93 -0.35 0.64 16 LS Contribution 365.09 15.07 5.50 5.50 Total: -1.00 -32.77 365.09 -8.96 -41.73 By element: Atomic # 1 Polarization: 5.80 SS G_CDS: -8.61 Total: -2.82 kcal Atomic # 6 Polarization: -0.16 SS G_CDS: -0.08 Total: -0.23 kcal Atomic # 7 Polarization: -46.59 SS G_CDS: -0.84 Total: -47.43 kcal Atomic # 8 Polarization: -13.97 SS G_CDS: 0.09 Total: -13.88 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.77 -8.96 -41.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429580100.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.654 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds